scbi_cominer 0.0.6 → 0.0.7

data/History.txt

@@ -1,3 +1,7 @@
+=== 0.0.7 2012-10-04
+
+Published graph methods
+
 === 0.0.6 2012-09-26
 
 Fixed offset and clear starts

data/lib/scbi_cominer/cominer.rb

@@ -5,7 +5,7 @@ require 'entropy_function'
 
 class Cominer
   
-  attr_accessor :regions,:snps,:position_table, :freq_table, :single_points
+  attr_accessor :regions,:snps,:position_table, :freq_table, :single_points, :entropy_function
   
   def initialize(contig)
     
@@ -21,18 +21,18 @@ class Cominer
     # puts freq_table.inspect
     #     exit
     #     
-  	ef = EntropyFunction.new(@freq_table)
+  	@entropy_function = EntropyFunction.new(@freq_table)
    
-    @regions=ef.regions
-    @snps=ef.snps
-    @single_points=ef.single_points
+    @regions=@entropy_function.regions
+    @snps=@entropy_function.snps
+    @single_points=@entropy_function.single_points
     
     @freq_table.position_table.delete('-')
     
 		@position_table = @freq_table.position_table
+		
     
-  end
-  
+  end  
   
   
 end

data/lib/scbi_cominer.rb

@@ -8,5 +8,5 @@ $: << File.join(File.dirname(__FILE__),File.basename(__FILE__,File.extname(__FIL
 require 'cominer.rb'
 
 module ScbiCominer
-   VERSION = '0.0.6'
+   VERSION = '0.0.7'
 end

data/test/test_scbi_cominer.rb

@@ -40,6 +40,8 @@ class TestScbiCominer < Test::Unit::TestCase
       puts cominer_stats.snps.to_json
       
       puts cominer_stats.single_points.to_json
+      
+    	cominer_stats.entropy_function.graph('/tmp/graph'+contig.name+'.png')
     	
     end
 

metadata

@@ -2,7 +2,7 @@
 name: scbi_cominer
 version: !ruby/object:Gem::Version 
   prerelease: 
-  version: 0.0.6
+  version: 0.0.7
 platform: ruby
 authors: 
 - Dario Guerrero
@@ -10,7 +10,7 @@ autorequire:
 bindir: bin
 cert_chain: []
 
-date: 2012-09-26 00:00:00 Z
+date: 2012-10-04 00:00:00 Z
 dependencies: 
 - !ruby/object:Gem::Dependency 
   name: scbi_ace