scbi_cominer 0.0.6 → 0.0.7

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data/History.txt CHANGED
@@ -1,3 +1,7 @@
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+ === 0.0.7 2012-10-04
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+
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+ Published graph methods
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+
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  === 0.0.6 2012-09-26
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  Fixed offset and clear starts
@@ -5,7 +5,7 @@ require 'entropy_function'
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  class Cominer
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- attr_accessor :regions,:snps,:position_table, :freq_table, :single_points
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+ attr_accessor :regions,:snps,:position_table, :freq_table, :single_points, :entropy_function
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  def initialize(contig)
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@@ -21,18 +21,18 @@ class Cominer
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  # puts freq_table.inspect
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  # exit
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  #
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- ef = EntropyFunction.new(@freq_table)
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+ @entropy_function = EntropyFunction.new(@freq_table)
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- @regions=ef.regions
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- @snps=ef.snps
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- @single_points=ef.single_points
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+ @regions=@entropy_function.regions
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+ @snps=@entropy_function.snps
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+ @single_points=@entropy_function.single_points
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  @freq_table.position_table.delete('-')
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  @position_table = @freq_table.position_table
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+
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- end
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-
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+ end
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  end
data/lib/scbi_cominer.rb CHANGED
@@ -8,5 +8,5 @@ $: << File.join(File.dirname(__FILE__),File.basename(__FILE__,File.extname(__FIL
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  require 'cominer.rb'
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  module ScbiCominer
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- VERSION = '0.0.6'
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+ VERSION = '0.0.7'
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  end
@@ -40,6 +40,8 @@ class TestScbiCominer < Test::Unit::TestCase
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  puts cominer_stats.snps.to_json
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  puts cominer_stats.single_points.to_json
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+
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+ cominer_stats.entropy_function.graph('/tmp/graph'+contig.name+'.png')
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  end
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metadata CHANGED
@@ -2,7 +2,7 @@
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  name: scbi_cominer
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  version: !ruby/object:Gem::Version
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  prerelease:
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- version: 0.0.6
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+ version: 0.0.7
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  platform: ruby
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  authors:
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  - Dario Guerrero
@@ -10,7 +10,7 @@ autorequire:
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  bindir: bin
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  cert_chain: []
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- date: 2012-09-26 00:00:00 Z
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+ date: 2012-10-04 00:00:00 Z
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  dependencies:
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  - !ruby/object:Gem::Dependency
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  name: scbi_ace