sample-template-generator 0.3.3 → 0.6.0

checksums.yaml

@@ -1,7 +1,7 @@
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-  data.tar.gz: 4ab0510eec5e2575843afde280f0f6071c61ca4c
+SHA256:
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+  data.tar.gz: e77cd48b9d4b9b127bc3c9c74ea5b3f2c77ee2f655bec962d2be456343223cb5
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data/.gitignore

@@ -9,3 +9,4 @@
 /tmp/
 .idea/
 *~
+.vscode/

data/.ruby-version

@@ -1 +1 @@
-ruby-2.1.9
+ruby-2.6.6

data/.travis.yml

@@ -1,10 +1,8 @@
 sudo: false
 language: ruby
 rvm:
-  - 2.1.9
-  - 2.2.5
-  - 2.3.1
+  - 2.2
+  - 2.4
 
 cache: bundler
 
-before_install: gem install bundler -v 1.12.5

data/README.md

@@ -3,9 +3,8 @@
 [![Code Climate](https://codeclimate.com/github/seek4science/sample-template-generator-gem/badges/gpa.svg)](https://codeclimate.com/github/seek4science/sample-template-generator-gem)  [![Build Status](https://travis-ci.org/seek4science/sample-template-generator-gem.svg?branch=master)](https://travis-ci.org/seek4science/sample-template-generator-gem)
 
 
-A very simple prototype of generating an Excel Template based upon Sample Type information in [SEEK](http://seekscience.org)
+A very simple library, specific to generating an Excel Template based upon Sample Type information in [SEEK](http://seekscience.org)
 
-This is currently very basic and scruffy prototyping work.
 
 SEEK is developed as part of [FAIRDOM](http://fair-dom.org)
 

data/lib/seek/sample_templates.rb

@@ -5,16 +5,18 @@ module Seek
   # Main entry point for generating templates
   module SampleTemplates
     # generates a template at the specific path
-    def self.generate(sheet_name, sheet_index, columns, path)
+    def self.generate(sheet_name, sheet_index, columns, base_template_path, output_path)
       Seek::SampleTemplates::Generator.new(
-        path, create_json(columns, sheet_index, sheet_name)
+          output_path, create_json(sheet_name,sheet_index,columns,base_template_path)
       ).generate
     end
 
-    def self.create_json(columns, sheet_index, sheet_name)
-      { sheet_name: sheet_name,
+    def self.create_json(sheet_name,sheet_index,columns,base_template_path)
+      definition = { sheet_name: sheet_name,
         sheet_index: sheet_index,
-        columns: columns.collect(&:as_json) }.to_json
+        columns: columns.collect(&:as_json) }
+      definition[:base_template_path]=base_template_path if base_template_path
+      definition.to_json
     end
 
     private_class_method :create_json

data/lib/seek/sample_templates/generator.rb

@@ -1,4 +1,4 @@
-require 'cocaine'
+require 'terrapin'
 require 'shellwords'
 
 module Seek
@@ -7,7 +7,7 @@ module Seek
     # Generally this shouldn't be used directly, but instead should be used
     # through Seek::SampleTemplates.generate(..)
     class Generator
-      JAR_VERSION = '0.3'.freeze
+      JAR_VERSION = '0.6'.freeze
       JAR_PATH = File.dirname(__FILE__) +
                  "/../../../jars/sample-template-generator-#{JAR_VERSION}.jar"
       DEFAULT_MEMORY_ALLOCATION = '512M'.freeze
@@ -35,9 +35,9 @@ module Seek
       end
 
       def run_with_cocaine
-        output = Cocaine::CommandLine.new(command).run
+        output = Terrapin::CommandLine.new(command).run
         output.strip
-      rescue Cocaine::ExitStatusError => exception
+      rescue Terrapin::ExitStatusError => exception
         raise exception.message
       end
     end

data/lib/seek/sample_templates/version.rb

@@ -1,5 +1,5 @@
 module Seek
   module SampleTemplates
-    VERSION = '0.3.3'.freeze
+    VERSION = '0.6.0'.freeze
   end
 end

data/sample-template-generator-gem.gemspec

@@ -18,13 +18,12 @@ Gem::Specification.new do |spec|
   spec.executables   = spec.files.grep(%r{^exe/}) { |f| File.basename(f) }
   spec.require_paths = ['lib']
 
-  spec.add_dependency('rdoc', ['>= 0'])
-  spec.add_dependency('cocaine', ['>= 0'])
+  spec.add_dependency('rdoc', ['~> 6.0'])
+  spec.add_dependency('terrapin', ['~> 0.6'])
 
-  spec.add_development_dependency('rubocop', ['>= 0'])
-  spec.add_development_dependency('rubycritic', ['>= 0'])
+  spec.add_development_dependency('rubocop', ['~> 1.6'])  
   spec.add_development_dependency 'bundler', '~> 1.12'
   spec.add_development_dependency 'rake', '~> 10.0'
-  spec.add_development_dependency 'minitest', '~> 5.0'
-  spec.add_development_dependency('activesupport', ">= 3.0.0", "< 5.0")
+  spec.add_development_dependency 'minitest', '~> 5.1'
+  spec.add_development_dependency('activesupport', "~> 5.2")
 end

metadata

@@ -1,71 +1,57 @@
 --- !ruby/object:Gem::Specification
 name: sample-template-generator
 version: !ruby/object:Gem::Version
-  version: 0.3.3
+  version: 0.6.0
 platform: ruby
 authors:
 - Stuart Owen
 autorequire: 
 bindir: exe
 cert_chain: []
-date: 2016-11-10 00:00:00.000000000 Z
+date: 2021-03-30 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: rdoc
   requirement: !ruby/object:Gem::Requirement
     requirements:
-    - - ">="
+    - - "~>"
       - !ruby/object:Gem::Version
-        version: '0'
+        version: '6.0'
   type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
-    - - ">="
+    - - "~>"
       - !ruby/object:Gem::Version
-        version: '0'
+        version: '6.0'
 - !ruby/object:Gem::Dependency
-  name: cocaine
+  name: terrapin
   requirement: !ruby/object:Gem::Requirement
     requirements:
-    - - ">="
+    - - "~>"
       - !ruby/object:Gem::Version
-        version: '0'
+        version: '0.6'
   type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
-    - - ">="
+    - - "~>"
       - !ruby/object:Gem::Version
-        version: '0'
+        version: '0.6'
 - !ruby/object:Gem::Dependency
   name: rubocop
   requirement: !ruby/object:Gem::Requirement
     requirements:
-    - - ">="
-      - !ruby/object:Gem::Version
-        version: '0'
-  type: :development
-  prerelease: false
-  version_requirements: !ruby/object:Gem::Requirement
-    requirements:
-    - - ">="
-      - !ruby/object:Gem::Version
-        version: '0'
-- !ruby/object:Gem::Dependency
-  name: rubycritic
-  requirement: !ruby/object:Gem::Requirement
-    requirements:
-    - - ">="
+    - - "~>"
       - !ruby/object:Gem::Version
-        version: '0'
+        version: '1.6'
   type: :development
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
-    - - ">="
+    - - "~>"
       - !ruby/object:Gem::Version
-        version: '0'
+        version: '1.6'
 - !ruby/object:Gem::Dependency
   name: bundler
   requirement: !ruby/object:Gem::Requirement
@@ -100,34 +86,28 @@ dependencies:
     requirements:
     - - "~>"
       - !ruby/object:Gem::Version
-        version: '5.0'
+        version: '5.1'
   type: :development
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
     - - "~>"
       - !ruby/object:Gem::Version
-        version: '5.0'
+        version: '5.1'
 - !ruby/object:Gem::Dependency
   name: activesupport
   requirement: !ruby/object:Gem::Requirement
     requirements:
-    - - ">="
-      - !ruby/object:Gem::Version
-        version: 3.0.0
-    - - "<"
+    - - "~>"
       - !ruby/object:Gem::Version
-        version: '5.0'
+        version: '5.2'
   type: :development
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
-    - - ">="
-      - !ruby/object:Gem::Version
-        version: 3.0.0
-    - - "<"
+    - - "~>"
       - !ruby/object:Gem::Version
-        version: '5.0'
+        version: '5.2'
 description: 
 email:
 - stuart.owen@manchester.ac.uk
@@ -148,16 +128,20 @@ files:
 - Rakefile
 - bin/console
 - bin/setup
-- jars/lib/commons-codec-1.10.jar
-- jars/lib/curvesapi-1.03.jar
+- jars/lib/SparseBitSet-1.2.jar
+- jars/lib/commons-codec-1.13.jar
+- jars/lib/commons-collections4-4.4.jar
+- jars/lib/commons-compress-1.19.jar
+- jars/lib/commons-math3-3.6.1.jar
+- jars/lib/curvesapi-1.06.jar
+- jars/lib/hamcrest-core-1.3.jar
 - jars/lib/json-simple-1.1.1.jar
-- jars/lib/junit-4.8.2.jar
-- jars/lib/poi-3.14.jar
-- jars/lib/poi-ooxml-3.14.jar
-- jars/lib/poi-ooxml-schemas-3.14.jar
-- jars/lib/stax-api-1.0.1.jar
-- jars/lib/xmlbeans-2.6.0.jar
-- jars/sample-template-generator-0.3.jar
+- jars/lib/junit-4.13.1.jar
+- jars/lib/poi-4.1.2.jar
+- jars/lib/poi-ooxml-4.1.2.jar
+- jars/lib/poi-ooxml-schemas-4.1.2.jar
+- jars/lib/xmlbeans-3.1.0.jar
+- jars/sample-template-generator-0.6.jar
 - lib/seek/sample_templates.rb
 - lib/seek/sample_templates/column.rb
 - lib/seek/sample_templates/generator.rb
@@ -182,8 +166,7 @@ required_rubygems_version: !ruby/object:Gem::Requirement
     - !ruby/object:Gem::Version
       version: '0'
 requirements: []
-rubyforge_project: 
-rubygems_version: 2.4.8
+rubygems_version: 3.0.9
 signing_key: 
 specification_version: 4
 summary: Bespoke tool for generating spreadsheet templates from Sample Types for use