sabina 0.1.0 → 0.1.1

checksums.yaml

@@ -1,7 +1,7 @@
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data/.gitignore

@@ -8,3 +8,5 @@
 /spec/reports/
 /tmp/
 /ex/
+/bin/
+/test/

data/README.md

@@ -1,5 +1,6 @@
 # Sabina
 
+[![Gem Version](https://badge.fury.io/rb/sabina.svg)](https://badge.fury.io/rb/sabina) [![Build Status](https://travis-ci.org/seinosuke/sabina.svg?branch=master)](https://travis-ci.org/seinosuke/sabina)  
 Sabina is a machine learning library.  
 This gem provides tools for Multi-Layer Perceptrons and Auto-Encoders.  
 
@@ -30,7 +31,7 @@ require 'sabina'
 
 DIM = 2
 K = 3
-LOOP_NUM = 100
+EPOCH = 100
 
 training_data = Sabina::MultilayerPerceptron.load_csv('training_data.csv')
 
@@ -47,7 +48,7 @@ options = {
 
 mp = Sabina::MultilayerPerceptron.new(options)
 
-LOOP_NUM.times do |t|
+EPOCH.times do |t|
   mp.learn
   error = mp.error(training_data)
   puts " error : #{error}"
@@ -62,7 +63,7 @@ Example of normal usage is shown below. Use `SparseAutoEncoder` class when the n
 require 'sabina'
 
 DIM = 2
-LOOP_NUM = 10
+EPOCH = 100
 
 original_data = Sabina::AutoEncoder.load_csv('training_data.csv')
 
@@ -79,7 +80,7 @@ options = {
 
 sae = Sabina::SparseAutoEncoder.new(options)
 
-LOOP_NUM.times do |t|
+EPOCH.times do |t|
   sae.learn
   error = sae.error(original_data)
   puts " error : #{error}"
@@ -101,7 +102,7 @@ x0,x1,label
 
 This is a example for two-dimensional vector data. For example, if you want to input D-dimensional vector data, write `x0,x1,...,x(D-1),label` at the first line.
 The column of `label` is used for a cluster id. For example, if there are three clusters in training data, a number at the `label` column will be 0, 1 or 2.  
-  
+
 When you prepare a CSV file, load the file as shown below.
 
 ```ruby
@@ -187,8 +188,14 @@ Run [examples/example_mp_02/main.rb](https://github.com/seinosuke/sabina/blob/ma
 
 Run [examples/example_ae_01/main.rb](https://github.com/seinosuke/sabina/blob/master/examples/example_ae_01/main.rb).  
 
-![ae_learning_process.gif](https://github.com/seinosuke/sabina/blob/master/examples/example_ae_01/mp_learning_process.gif)
+![ae_learning_process.gif](https://github.com/seinosuke/sabina/blob/master/examples/example_ae_01/ae_learning_process.gif)
+
+
+## MNIST Example
 
+[https://github.com/seinosuke/sabina_mnist_example](https://github.com/seinosuke/sabina_mnist_example)  
+
+![sabina_demo_01.gif](https://github.com/seinosuke/sabina_mnist_example/blob/master/images/sabina_demo_01.gif)
 
 ## Contributing
 
@@ -198,4 +205,3 @@ Bug reports and pull requests are welcome on GitHub at https://github.com/seinos
 ## License
 
 The gem is available as open source under the terms of the [MIT License](http://opensource.org/licenses/MIT).
-

data/examples/example_ae_01/main.rb

@@ -3,7 +3,7 @@ require 'open3'
 require 'sabina'
 
 DIM = 2
-LOOP_NUM = 100
+EPOCH = 100
 xrange = [-2.2, 2.2]
 yrange = [-2.2, 2.2]
 
@@ -76,7 +76,7 @@ Open3.popen3('gnuplot') do |gp_in, gp_out, gp_err|
   log = []
   x_mat = Matrix.columns( original_data.map { |data| data[:x] } )
 
-  LOOP_NUM.times do |t|
+  EPOCH.times do |t|
     sae.learn
     log << sae.error(original_data)
     gp_in.puts "set multiplot layout 1, 2"
@@ -112,7 +112,7 @@ Open3.popen3('gnuplot') do |gp_in, gp_out, gp_err|
 
     # progress bar
     puts " error : #{log.last}"
-    puts " [#{("*"*(t / (LOOP_NUM / 10))).ljust(10, " ")}]"
+    puts " [#{("*"*((t.to_f / EPOCH)*10).to_i).ljust(9, " ")}]"
     print "\e[2A"; STDOUT.flush;
   end
 

data/examples/example_mp_01/main.rb

@@ -4,7 +4,7 @@ require 'sabina'
 
 DIM = 2
 K = 2
-LOOP_NUM = 100
+EPOCH = 100
 xrange = [-2.2, 2.2]
 yrange = [-2.2, 2.2]
 
@@ -84,7 +84,7 @@ Open3.popen3('gnuplot') do |gp_in, gp_out, gp_err|
   end
   x_mat = Matrix.columns( tmp_data )
 
-  LOOP_NUM.times do |t|
+  EPOCH.times do |t|
     mp.learn
     log << mp.error(training_data)
     gp_in.puts "set multiplot layout 1, 2"
@@ -132,7 +132,7 @@ Open3.popen3('gnuplot') do |gp_in, gp_out, gp_err|
     # Training Error
     ##################################################
     gp_in.puts "set label 2 center at screen 0.79,0.9 'Training Error' font 'Helvetica,22'"
-    gp_in.puts "set xrange [0:#{LOOP_NUM}]"
+    gp_in.puts "set xrange [0:#{EPOCH}]"
     gp_in.puts "set yrange [0:#{log.first + 10}]"
     gp_in.puts "set xlabel 'iteration number'"
     gp_in.puts "set ylabel 'training error'"
@@ -147,7 +147,7 @@ Open3.popen3('gnuplot') do |gp_in, gp_out, gp_err|
 
     # progress bar
     puts " error : #{log.last}"
-    puts " [#{("*"*(t / (LOOP_NUM / 10))).ljust(10, " ")}]"
+    puts " [#{("*"*((t.to_f / EPOCH)*10).to_i).ljust(9, " ")}]"
     print "\e[2A"; STDOUT.flush;
   end
 

data/examples/example_mp_02/main.rb

@@ -4,7 +4,7 @@ require 'sabina'
 
 DIM = 2
 K = 3
-LOOP_NUM = 100
+EPOCH = 100
 xrange = [-2.2, 2.2]
 yrange = [-2.2, 2.2]
 
@@ -96,7 +96,7 @@ Open3.popen3('gnuplot') do |gp_in, gp_out, gp_err|
   end
   x_mat = Matrix.columns( tmp_data )
 
-  LOOP_NUM.times do |t|
+  EPOCH.times do |t|
     mp.learn
     log << mp.error(training_data)
     gp_in.puts "set multiplot layout 1, 2"
@@ -144,7 +144,7 @@ Open3.popen3('gnuplot') do |gp_in, gp_out, gp_err|
     # Training Error
     ##################################################
     gp_in.puts "set label 2 center at screen 0.79,0.9 'Training Error' font 'Helvetica,22'"
-    gp_in.puts "set xrange [0:#{LOOP_NUM}]"
+    gp_in.puts "set xrange [0:#{EPOCH}]"
     gp_in.puts "set yrange [0:#{log.first + 10}]"
     gp_in.puts "set xlabel 'iteration number'"
     gp_in.puts "set ylabel 'training error'"
@@ -159,7 +159,7 @@ Open3.popen3('gnuplot') do |gp_in, gp_out, gp_err|
 
     # progress bar
     puts " error : #{log.last}"
-    puts " [#{("*"*(t / (LOOP_NUM / 10))).ljust(10, " ")}]"
+    puts " [#{("*"*((t.to_f / EPOCH)*10).to_i).ljust(9, " ")}]"
     print "\e[2A"; STDOUT.flush;
   end
 

data/lib/sabina.rb

@@ -2,7 +2,7 @@ require 'matrix'
 require 'csv'
 
 require "sabina/version"
-require "sabina/util"
+require "sabina/utils"
 require "sabina/layer"
 require "sabina/layer/base_layer"
 require "sabina/configuration"

data/lib/sabina/auto_encoder.rb

@@ -4,7 +4,7 @@ module Sabina
     def self.load_csv(file_name)
       table = CSV.table(file_name)
       table.map do |data|
-        x = (data.size-1).times.map { |d| data["x#{d}".to_sym] }
+        x = data[0..-2]
         { :x => x, :d => x }
       end
     end
@@ -13,11 +13,11 @@ module Sabina
     def check_layers
       super
 
-      if layers.size != 3
+      if @layers.size != 3
         raise "The number of layers must be three."
       end
 
-      if layers.first.size != layers.last.size
+      if @layers.first.size != @layers.last.size
         raise "The number of units of the input layer must be equal to that of the output layer."
       end
     end

data/lib/sabina/layer/base_layer.rb

@@ -16,7 +16,7 @@ module Sabina::Layer
 
       # (J, I)
       @W = Array.new(@J) do
-        Array.new(@I) { Sabina::Util.box_muller }
+        Array.new(@I) { Sabina::Utils.box_muller }
       end.tap { |ary| break Matrix[*ary] }
     end
 

data/lib/sabina/multilayer_perceptron.rb

@@ -8,8 +8,8 @@ module Sabina
       table = CSV.table(file_name)
       k = table[:label].max + 1
       table.map do |data|
-        x = (data.size-1).times.map { |d| data["x#{d}".to_sym] }
-        d = Array.new(k) { |i| i == data[:label] ? 1 : 0 }
+        x = data[0..-2]
+        d = Array.new(k) { 0 }.tap { |ary| ary[data[:label]] = 1 }
         { :x => x, :d => d }
       end
     end
@@ -46,8 +46,8 @@ module Sabina
 
     # Check if `@layers` is valid.
     def check_layers
-      if layers.size < 3
-        raise "The number of layers size must be more than three."
+      if @layers.size < 3
+        raise "The number of layers must be more than three."
       end
     end
 
@@ -62,7 +62,7 @@ module Sabina
       end
     end
 
-    # A learning step consists of 
+    # A learning step consists of
     # a forward propagation, a backward propagation
     # and updating the weights of this multi-layer perceptron.
     def learn

data/lib/sabina/{util.rb → utils.rb}

@@ -1,5 +1,5 @@
 module Sabina
-  module Util
+  module Utils
     def box_muller(s = 1.0)
       r_1 = rand
       r_2 = rand

data/lib/sabina/version.rb

@@ -1,3 +1,3 @@
 module Sabina
-  VERSION = "0.1.0"
+  VERSION = "0.1.1"
 end

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: sabina
 version: !ruby/object:Gem::Version
-  version: 0.1.0
+  version: 0.1.1
 platform: ruby
 authors:
 - seinosuke
 autorequire: 
 bindir: exe
 cert_chain: []
-date: 2016-04-19 00:00:00.000000000 Z
+date: 2016-10-13 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: bundler
@@ -94,7 +94,7 @@ files:
 - lib/sabina/layer/mp_output_layer.rb
 - lib/sabina/multilayer_perceptron.rb
 - lib/sabina/sparse_auto_encoder.rb
-- lib/sabina/util.rb
+- lib/sabina/utils.rb
 - lib/sabina/version.rb
 - sabina.gemspec
 homepage: https://github.com/seinosuke/sabina
@@ -117,7 +117,7 @@ required_rubygems_version: !ruby/object:Gem::Requirement
       version: '0'
 requirements: []
 rubyforge_project: 
-rubygems_version: 2.4.5
+rubygems_version: 2.5.1
 signing_key: 
 specification_version: 4
 summary: This gem is a machine learning library.