rust 0.3 → 0.9
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- checksums.yaml +4 -4
- data/bin/ruby-rust +3 -0
- data/lib/{rust-csv.rb → rust/core/csv.rb} +14 -4
- data/lib/rust/core/rust.rb +157 -0
- data/lib/rust/core/types/all.rb +4 -0
- data/lib/{rust-core.rb → rust/core/types/dataframe.rb} +183 -245
- data/lib/rust/core/types/datatype.rb +161 -0
- data/lib/rust/core/types/factor.rb +131 -0
- data/lib/rust/core/types/language.rb +166 -0
- data/lib/rust/core/types/list.rb +81 -0
- data/lib/rust/core/types/matrix.rb +132 -0
- data/lib/rust/core/types/s4class.rb +59 -0
- data/lib/rust/core/types/utils.rb +109 -0
- data/lib/rust/core.rb +7 -0
- data/lib/rust/models/all.rb +4 -0
- data/lib/rust/models/anova.rb +60 -0
- data/lib/rust/models/regression.rb +205 -0
- data/lib/rust/plots/all.rb +4 -0
- data/lib/rust/plots/basic-plots.rb +111 -0
- data/lib/{rust-plots.rb → rust/plots/core.rb} +64 -129
- data/lib/rust/plots/distribution-plots.rb +62 -0
- data/lib/rust/stats/all.rb +4 -0
- data/lib/{rust-basics.rb → rust/stats/correlation.rb} +11 -5
- data/lib/rust/stats/descriptive.rb +128 -0
- data/lib/{rust-effsize.rb → rust/stats/effsize.rb} +23 -21
- data/lib/rust/stats/probabilities.rb +248 -0
- data/lib/rust/stats/tests.rb +292 -0
- data/lib/rust.rb +4 -8
- metadata +31 -12
- data/lib/rust-calls.rb +0 -69
- data/lib/rust-descriptive.rb +0 -59
- data/lib/rust-tests.rb +0 -165
checksums.yaml
CHANGED
@@ -1,7 +1,7 @@
|
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1
1
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---
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2
2
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SHA256:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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+
metadata.gz: aaa404db11033ff42b529516ae4a3f3e252bdddf7677d082847ee06625144f8e
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4
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+
data.tar.gz: f72ebc2c95385b87a445f3fb8de3e517579b002e0606209903acd2327616befd
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5
5
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SHA512:
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6
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-
metadata.gz:
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7
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-
data.tar.gz:
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6
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+
metadata.gz: 00567c9b6216f7e9dc1a4135dbea263eecae2178273851c023980233531729313e15147e1bec8e9521df2d4fee15e2c4c8bf9bd4a0e2d1475f1d383339a17c21
|
7
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+
data.tar.gz: 89800fff95be559e6f6bbbc05b6b5f5b52b7d59c54c61cd76ef679876ce5de0c08b405d88eadf0b254c95306ad98f38120e5960a92ce8358fca19ed6cc5c181d
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data/bin/ruby-rust
ADDED
@@ -1,9 +1,10 @@
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1
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-
require_relative '
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1
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+
require_relative '../core'
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2
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+
require 'csv'
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2
3
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3
4
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module Rust
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5
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class CSV
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5
6
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def self.read_all(pattern, **options)
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6
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-
result =
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7
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+
result = DataFrameHash.new
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7
8
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Dir.glob(pattern).each do |filename|
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8
9
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result[filename] = CSV.read(filename, **options)
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9
10
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end
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@@ -49,10 +50,9 @@ module Rust
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49
50
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raise TypeError, "Expected Rust::DataFrame" unless dataframe.is_a?(Rust::DataFrame)
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50
51
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|
51
52
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write_headers = options[:headers] != false
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52
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-
options[:headers] = dataframe.column_names
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53
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+
options[:headers] = dataframe.column_names unless options[:headers]
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53
54
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|
54
55
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hash = {}
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55
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-
labels = nil
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56
56
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::CSV.open(filename, 'w', write_headers: write_headers, **options) do |csv|
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57
57
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dataframe.each do |row|
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58
58
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csv << row
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@@ -93,3 +93,13 @@ module Rust
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93
93
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end
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94
94
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end
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95
95
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end
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96
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+
|
97
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+
module Rust::RBindings
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98
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+
def read_csv(filename, **options)
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99
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+
Rust::CSV.read(filename, **options)
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100
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+
end
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101
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+
|
102
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+
def write_csv(filename, dataframe, **options)
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103
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+
Rust::CSV.write(filename, dataframe, **options)
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104
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+
end
|
105
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end
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@@ -0,0 +1,157 @@
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1
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+
require 'code-assertions'
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2
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+
require 'stringio'
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3
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+
require 'rinruby'
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4
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+
|
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module Rust
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6
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+
CLIENT_MUTEX = Mutex.new
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7
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+
R_MUTEX = Mutex.new
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8
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+
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9
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+
R_ENGINE = RinRuby.new(echo: false)
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10
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+
|
11
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+
private_constant :R_ENGINE
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12
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private_constant :R_MUTEX
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13
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+
private_constant :CLIENT_MUTEX
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14
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+
|
15
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+
@@debugging = $RUST_DEBUG || false
|
16
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+
@@in_client_mutex = false
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17
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+
|
18
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+
def self.debug
|
19
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+
@@debugging = true
|
20
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+
end
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21
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+
|
22
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+
def self.debug?
|
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return @@debugging
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+
end
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25
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+
|
26
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+
def self.exclusive
|
27
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+
result = nil
|
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+
CLIENT_MUTEX.synchronize do
|
29
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+
@@in_client_mutex = true
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30
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+
result = yield
|
31
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+
@@in_client_mutex = false
|
32
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+
end
|
33
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+
return result
|
34
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+
end
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35
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+
|
36
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+
def self.[]=(variable, value)
|
37
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+
if value.is_a?(RustDatatype)
|
38
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+
value.load_in_r_as(variable.to_s)
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39
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+
elsif value.is_a?(String) || value.is_a?(Numeric) || value.is_a?(Array) || value.is_a?(::Matrix)
|
40
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+
R_ENGINE.assign(variable, value)
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41
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+
else
|
42
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+
raise "Trying to assign #{variable} with #{value.class}; expected RustDatatype, String, Numeric, or Array"
|
43
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+
end
|
44
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+
|
45
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+
end
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46
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+
|
47
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+
def self.[](variable)
|
48
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+
return RustDatatype.pull_variable(variable)
|
49
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+
end
|
50
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+
|
51
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+
def self._eval_big(r_command, return_warnings = false)
|
52
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+
r_command = r_command.join("\n") if r_command.is_a?(Array)
|
53
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+
|
54
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+
self._rexec(r_command, return_warnings) do |cmd|
|
55
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+
result = true
|
56
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+
instructions = cmd.lines
|
57
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+
|
58
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+
while instructions.size > 0
|
59
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+
current_command = ""
|
60
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+
|
61
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+
while (instructions.size > 0) && (current_command.length + instructions.first.length < 10000)
|
62
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+
current_command << instructions.shift
|
63
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+
end
|
64
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+
|
65
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+
result &= R_ENGINE.eval(current_command)
|
66
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+
end
|
67
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+
|
68
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result
|
69
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+
end
|
70
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+
end
|
71
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+
|
72
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+
def self._pull(r_command, return_warnings = false)
|
73
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+
self._rexec(r_command, return_warnings) { |cmd| R_ENGINE.pull(cmd) }
|
74
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+
end
|
75
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+
|
76
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+
def self._eval(r_command, return_warnings = false)
|
77
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+
self._rexec(r_command, return_warnings) { |cmd| R_ENGINE.eval(cmd) }
|
78
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+
end
|
79
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+
|
80
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+
def self._rexec(r_command, return_warnings = false)
|
81
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+
puts "Calling _rexec with command: #{r_command}" if @@debugging
|
82
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+
R_MUTEX.synchronize do
|
83
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+
assert("This command must be executed in an exclusive block") { @@in_client_mutex }
|
84
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+
|
85
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+
result = nil
|
86
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+
begin
|
87
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+
$stdout = StringIO.new
|
88
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+
if return_warnings
|
89
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+
R_ENGINE.echo(true, true)
|
90
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+
else
|
91
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+
R_ENGINE.echo(false, false)
|
92
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+
end
|
93
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+
result = yield(r_command)
|
94
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+
ensure
|
95
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+
R_ENGINE.echo(false, false)
|
96
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+
warnings = $stdout.string
|
97
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+
$stdout = STDOUT
|
98
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+
end
|
99
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+
|
100
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+
if return_warnings
|
101
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+
puts " Got #{warnings.size} warnings, with result #{result.inspect[0...100]}" if @@debugging
|
102
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+
return result, warnings.lines.map { |w| w.strip.chomp }
|
103
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+
else
|
104
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+
puts " Result: #{result.inspect[0...100]}" if @@debugging
|
105
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+
return result
|
106
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+
end
|
107
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+
end
|
108
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+
end
|
109
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+
|
110
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+
def self.check_library(name)
|
111
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+
self.exclusive do
|
112
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+
result, _ = self._pull("require(\"#{name}\", character.only = TRUE)", true)
|
113
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+
return result
|
114
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+
end
|
115
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+
end
|
116
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+
|
117
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+
def self.load_library(name)
|
118
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+
self.exclusive do
|
119
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+
self._eval("library(\"#{name}\", character.only = TRUE)")
|
120
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+
end
|
121
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+
|
122
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+
return nil
|
123
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+
end
|
124
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+
|
125
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+
def self.install_library(name)
|
126
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+
self.exclusive do
|
127
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+
self._eval("install.packages(\"#{name}\", dependencies = TRUE)")
|
128
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+
end
|
129
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+
|
130
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+
return nil
|
131
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+
end
|
132
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+
|
133
|
+
def self.prerequisite(library)
|
134
|
+
self.install_library(library) unless self.check_library(library)
|
135
|
+
self.load_library(library)
|
136
|
+
end
|
137
|
+
end
|
138
|
+
|
139
|
+
module Rust::RBindings
|
140
|
+
def data_frame(*args)
|
141
|
+
Rust::DataFrame.new(*args)
|
142
|
+
end
|
143
|
+
end
|
144
|
+
|
145
|
+
module Rust::TestCases
|
146
|
+
def self.sample_dataframe(columns, size=100)
|
147
|
+
result = Rust::DataFrame.new(columns)
|
148
|
+
size.times do |i|
|
149
|
+
result << columns.map { |c| yield i, c }
|
150
|
+
end
|
151
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+
return result
|
152
|
+
end
|
153
|
+
end
|
154
|
+
|
155
|
+
def bind_r!
|
156
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+
include Rust::RBindings
|
157
|
+
end
|