rumale 0.22.5 → 0.23.2

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Files changed (43) hide show
  1. checksums.yaml +4 -4
  2. data/CHANGELOG.md +21 -0
  3. data/LICENSE.txt +1 -1
  4. data/README.md +34 -2
  5. data/ext/rumale/extconf.rb +1 -1
  6. data/ext/rumale/{tree.c → rumaleext.c} +51 -85
  7. data/ext/rumale/{tree.h → rumaleext.h} +5 -5
  8. data/lib/rumale/clustering/hdbscan.rb +28 -8
  9. data/lib/rumale/clustering/single_linkage.rb +23 -5
  10. data/lib/rumale/decomposition/fast_ica.rb +1 -1
  11. data/lib/rumale/ensemble/gradient_boosting_classifier.rb +2 -2
  12. data/lib/rumale/ensemble/gradient_boosting_regressor.rb +1 -1
  13. data/lib/rumale/ensemble/random_forest_classifier.rb +1 -1
  14. data/lib/rumale/ensemble/random_forest_regressor.rb +1 -1
  15. data/lib/rumale/evaluation_measure/roc_auc.rb +1 -2
  16. data/lib/rumale/kernel_approximation/nystroem.rb +1 -1
  17. data/lib/rumale/kernel_machine/kernel_svc.rb +1 -1
  18. data/lib/rumale/linear_model/linear_regression.rb +5 -3
  19. data/lib/rumale/linear_model/ridge.rb +3 -3
  20. data/lib/rumale/model_selection/grid_search_cv.rb +3 -3
  21. data/lib/rumale/naive_bayes/bernoulli_nb.rb +1 -1
  22. data/lib/rumale/naive_bayes/gaussian_nb.rb +1 -1
  23. data/lib/rumale/naive_bayes/multinomial_nb.rb +1 -1
  24. data/lib/rumale/nearest_neighbors/vp_tree.rb +2 -0
  25. data/lib/rumale/tree/base_decision_tree.rb +15 -10
  26. data/lib/rumale/tree/decision_tree_classifier.rb +14 -11
  27. data/lib/rumale/tree/decision_tree_regressor.rb +0 -1
  28. data/lib/rumale/tree/gradient_tree_regressor.rb +15 -11
  29. data/lib/rumale/version.rb +1 -1
  30. data/lib/rumale.rb +132 -133
  31. metadata +6 -17
  32. data/.coveralls.yml +0 -1
  33. data/.github/workflows/build.yml +0 -26
  34. data/.github/workflows/coverage.yml +0 -28
  35. data/.gitignore +0 -23
  36. data/.rspec +0 -3
  37. data/.rubocop.yml +0 -93
  38. data/.travis.yml +0 -17
  39. data/Gemfile +0 -17
  40. data/Rakefile +0 -14
  41. data/ext/rumale/rumale.c +0 -10
  42. data/ext/rumale/rumale.h +0 -8
  43. data/rumale.gemspec +0 -49
@@ -1,26 +0,0 @@
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- name: build
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-
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- on: [push, pull_request]
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-
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- jobs:
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- build:
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- runs-on: ubuntu-latest
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- strategy:
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- fail-fast: false
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- matrix:
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- ruby: [ '2.5', '2.6', '2.7', '3.0' ]
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- steps:
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- - uses: actions/checkout@v2
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- - name: Install BLAS and LAPACK
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- run: sudo apt-get install -y libopenblas-dev liblapacke-dev
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- - name: Set up Ruby ${{ matrix.ruby }}
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- uses: actions/setup-ruby@v1
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- with:
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- ruby-version: ${{ matrix.ruby }}
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- - name: Build and test with Rake
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- env:
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- LD_LIBRARY_PATH: '/usr/lib/x86_64-linux-gnu/'
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- run: |
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- gem install --no-document bundler
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- bundle install --jobs 4 --retry 3
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- bundle exec rake
@@ -1,28 +0,0 @@
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- name: coverage
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-
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- on:
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- push:
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- branches: [ main ]
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- pull_request:
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- branches: [ main ]
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-
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- jobs:
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- coverage:
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- runs-on: ubuntu-20.04
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- steps:
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- - uses: actions/checkout@v2
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- - name: Install BLAS and LAPACK
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- run: sudo apt-get install -y libopenblas-dev liblapacke-dev
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- - name: Set up Ruby 2.7
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- uses: actions/setup-ruby@v1
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- with:
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- ruby-version: '2.7'
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- - name: Build and test with Rake
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- run: |
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- gem install bundler
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- bundle install
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- bundle exec rake
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- - name: Coveralls GitHub Action
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- uses: coverallsapp/github-action@v1.1.2
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- with:
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- github-token: ${{ secrets.GITHUB_TOKEN }}
data/.gitignore DELETED
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- /.bundle/
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- /.yardoc
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- /Gemfile.lock
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- /_yardoc/
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- /coverage/
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- /doc/
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- /pkg/
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- /spec/reports/
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- /tmp/
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-
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- # rspec failure tracking
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- .rspec_status
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-
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- *.swp
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- *.bundle
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- tags
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- .DS_Store
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- .ruby-version
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- iterate.dat
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- /spec/dump_dbl.t
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- /spec/dump_int.t
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- /spec/dump_mult_dbl.t
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- /spec/dump_zb.t
data/.rspec DELETED
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- --format documentation
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- --color
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- --require spec_helper
data/.rubocop.yml DELETED
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- require:
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- - rubocop-performance
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- - rubocop-rake
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- - rubocop-rspec
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-
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- AllCops:
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- NewCops: enable
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- TargetRubyVersion: 2.5
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- DisplayCopNames: true
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- DisplayStyleGuide: true
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- Exclude:
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- - 'ext/rumale/extconf.rb'
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- - 'rumale.gemspec'
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- - 'Rakefile'
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- - 'Gemfile'
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-
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- Style/Documentation:
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- Enabled: false
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-
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- Layout/LineLength:
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- Max: 145
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- IgnoredPatterns: ['(\A|\s)#']
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-
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- Lint/ConstantDefinitionInBlock:
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- Enabled: false
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-
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- Lint/MissingSuper:
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- Enabled: false
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-
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- Metrics/ModuleLength:
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- Max: 200
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-
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- Metrics/ClassLength:
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- Max: 200
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-
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- Metrics/MethodLength:
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- Max: 40
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-
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- Metrics/AbcSize:
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- Max: 60
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-
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- Metrics/CyclomaticComplexity:
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- Max: 16
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-
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- Metrics/PerceivedComplexity:
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- Max: 16
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-
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- Metrics/BlockLength:
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- Max: 40
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- Exclude:
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- - 'spec/**/*'
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-
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- Metrics/ParameterLists:
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- Max: 15
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-
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- Security/MarshalLoad:
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- Enabled: false
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-
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- Naming/MethodParameterName:
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- Enabled: false
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-
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- Naming/ConstantName:
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- Enabled: false
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-
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- Style/FormatStringToken:
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- Enabled: false
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-
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- Style/NumericLiterals:
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- Enabled: false
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-
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- Style/StringConcatenation:
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- Enabled: false
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-
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- RSpec/MultipleExpectations:
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- Enabled: false
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-
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- RSpec/MultipleMemoizedHelpers:
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- Max: 25
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-
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- RSpec/NestedGroups:
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- Max: 4
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-
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- RSpec/ExampleLength:
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- Max: 40
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-
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- RSpec/InstanceVariable:
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- Enabled: false
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-
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- RSpec/LeakyConstantDeclaration:
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- Enabled: false
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-
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- Performance/Sum:
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- Enabled: false
data/.travis.yml DELETED
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- ---
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- language: ruby
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- cache: bundler
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- rvm:
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- - '2.4'
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- - '2.5'
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- - '2.6'
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- - '2.7'
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-
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- addons:
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- apt:
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- packages:
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- - libopenblas-dev
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- - liblapacke-dev
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-
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- before_install:
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- - gem install bundler -v 2.1.4
data/Gemfile DELETED
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- source 'https://rubygems.org'
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-
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- # Specify your gem's dependencies in rumale.gemspec
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- gemspec
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-
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- gem 'mmh3', '>= 1.0'
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- gem 'numo-linalg', '>= 0.1.4'
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- gem 'parallel', '>= 1.17.0'
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- gem 'rake', '~> 13.0'
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- gem 'rake-compiler', '~> 1.0'
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- gem 'rspec', '~> 3.0'
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- gem 'rubocop', '~> 1.0'
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- gem 'rubocop-performance', '~> 1.8'
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- gem 'rubocop-rake', '~> 0.5'
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- gem 'rubocop-rspec', '~> 2.0'
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- gem 'simplecov', '~> 0.21'
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- gem 'simplecov-lcov', '~> 0.8'
data/Rakefile DELETED
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- require 'bundler/gem_tasks'
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- require 'rspec/core/rake_task'
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-
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- RSpec::Core::RakeTask.new(:spec)
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-
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- require 'rake/extensiontask'
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-
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- task :build => :compile
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-
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- Rake::ExtensionTask.new('rumale') do |ext|
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- ext.lib_dir = 'lib/rumale'
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- end
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-
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- task :default => [:clobber, :compile, :spec]
data/ext/rumale/rumale.c DELETED
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- #include "rumale.h"
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-
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- VALUE mRumale;
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-
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- void Init_rumale(void)
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- {
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- mRumale = rb_define_module("Rumale");
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-
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- init_tree_module();
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- }
data/ext/rumale/rumale.h DELETED
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- #ifndef RUMALE_H
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- #define RUMALE_H 1
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-
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- #include <ruby.h>
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-
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- #include "tree.h"
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-
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- #endif /* RUMALE_H */
data/rumale.gemspec DELETED
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- lib = File.expand_path('lib', __dir__)
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- $LOAD_PATH.unshift(lib) unless $LOAD_PATH.include?(lib)
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- require 'rumale/version'
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-
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- Gem::Specification.new do |spec|
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- spec.name = 'rumale'
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- spec.version = Rumale::VERSION
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- spec.authors = ['yoshoku']
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- spec.email = ['yoshoku@outlook.com']
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-
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- spec.summary = <<~MSG
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- Rumale is a machine learning library in Ruby.
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- Rumale provides machine learning algorithms with interfaces similar to Scikit-Learn in Python.
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- MSG
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- spec.description = <<~MSG
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- Rumale is a machine learning library in Ruby.
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- Rumale provides machine learning algorithms with interfaces similar to Scikit-Learn in Python.
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- Rumale supports Support Vector Machine,
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- Logistic Regression, Ridge, Lasso,
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- Multi-layer Perceptron,
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- Naive Bayes, Decision Tree, Gradient Tree Boosting, Random Forest,
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- K-Means, Gaussian Mixture Model, DBSCAN, Spectral Clustering,
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- Mutidimensional Scaling, t-SNE,
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- Fisher Discriminant Analysis, Neighbourhood Component Analysis,
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- Principal Component Analysis, Non-negative Matrix Factorization,
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- and many other algorithms.
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- MSG
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- spec.homepage = 'https://github.com/yoshoku/rumale'
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- spec.license = 'BSD-2-Clause'
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-
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- spec.files = `git ls-files -z`.split("\x0").reject do |f|
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- f.match(%r{^(test|spec|features)/})
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- end
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- spec.bindir = 'exe'
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- spec.executables = spec.files.grep(%r{^exe/}) { |f| File.basename(f) }
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- spec.require_paths = ['lib']
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- spec.extensions = ['ext/rumale/extconf.rb']
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-
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- spec.metadata = {
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- 'homepage_uri' => 'https://github.com/yoshoku/rumale',
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- 'changelog_uri' => 'https://github.com/yoshoku/rumale/blob/main/CHANGELOG.md',
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- 'source_code_uri' => 'https://github.com/yoshoku/rumale',
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- 'documentation_uri' => 'https://yoshoku.github.io/rumale/doc/',
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- 'bug_tracker_uri' => 'https://github.com/yoshoku/rumale/issues'
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- }
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-
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- spec.add_runtime_dependency 'numo-narray', '>= 0.9.1'
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- spec.add_runtime_dependency 'lbfgsb', '>=0.3.0'
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- end