rubyfca 0.2.2 → 0.2.4

data/.gitignore

@@ -1,21 +1,5 @@
-*.gem
-*.rbc
-.bundle
-.config
-.yardoc
-Gemfile.lock
-InstalledFiles
-_yardoc
+*.sw?
+.DS_Store
 coverage
-doc/
-lib/bundler/man
-pkg
 rdoc
-spec/reports
-test/tmp
-test/version_tmp
-tmp
-.DS_Store
-*.bak
-*.~
-*.log
+pkg

data/README.rdoc

@@ -4,7 +4,7 @@ Command line tool for Formal Concept Analysis (FCA) written in Ruby.
 
 == Features
 
-* Convert a Conexp's CXT or CSV file and generate a Graphviz DOT file, or a PNG/JPG/EPS image file.
+* Convert a Conexp's CXT file and generate a Graphviz DOT file, or a PNG/JPG/EPS image file.
 * Adopt the Ganter algorithm (through its Perl implementation of Fcastone by Uta Priss).
 
 == Installation
@@ -19,7 +19,7 @@ Install the gem:
 
   where:
   <source file>
-         "foo.cxt", "foo.csv"
+         "foo.cxt"
   <output file>
          "bar.dot", "bar.png", "bar.jpg", or "bar.eps"
   [options]:
@@ -33,6 +33,7 @@ Install the gem:
 
 == ToDo
 
+* Multiple input formats (such as CSV)
 * Database connection capability
 
 == Links
@@ -41,4 +42,4 @@ under construction
 
 == Copyright
 
-Copyright (c) 2009-2012 Yoichiro Hasebe and Kow Kuroda. See LICENSE for details.
+Copyright (c) 2009 Yoichiro Hasebe and Kow Kuroda. See LICENSE for details.

data/Rakefile

@@ -1,2 +1,56 @@
-#!/usr/bin/env rake
-require "bundler/gem_tasks"
+require 'rubygems'
+require 'rake'
+
+begin
+  require 'jeweler'
+  Jeweler::Tasks.new do |gem|
+    gem.name = "rubyfca"
+    gem.summary = %Q{TODO: one-line summary of your gem}
+    gem.description = %Q{TODO: longer description of your gem}
+    gem.email = "yohasebe@gmail.com"
+    gem.homepage = "http://github.com/yohasebe/rubyfca"
+    gem.authors = ["Yoichiro Hasebe"]
+    gem.add_development_dependency "thoughtbot-shoulda"
+    # gem is a Gem::Specification... see http://www.rubygems.org/read/chapter/20 for additional settings
+  end
+rescue LoadError
+  puts "Jeweler (or a dependency) not available. Install it with: sudo gem install jeweler"
+end
+
+require 'rake/testtask'
+Rake::TestTask.new(:test) do |test|
+  test.libs << 'lib' << 'test'
+  test.pattern = 'test/**/*_test.rb'
+  test.verbose = true
+end
+
+begin
+  require 'rcov/rcovtask'
+  Rcov::RcovTask.new do |test|
+    test.libs << 'test'
+    test.pattern = 'test/**/*_test.rb'
+    test.verbose = true
+  end
+rescue LoadError
+  task :rcov do
+    abort "RCov is not available. In order to run rcov, you must: sudo gem install spicycode-rcov"
+  end
+end
+
+task :test => :check_dependencies
+
+task :default => :test
+
+require 'rake/rdoctask'
+Rake::RDocTask.new do |rdoc|
+  if File.exist?('VERSION')
+    version = File.read('VERSION')
+  else
+    version = ""
+  end
+
+  rdoc.rdoc_dir = 'rdoc'
+  rdoc.title = "rubyfca #{version}"
+  rdoc.rdoc_files.include('README*')
+  rdoc.rdoc_files.include('lib/**/*.rb')
+end

data/VERSION

@@ -0,0 +1 @@
+0.2.4

data/bin/rubyfca

@@ -1,15 +1,14 @@
 #!/usr/bin/env ruby
-# -*- coding: utf-8 -*-
-Encoding.default_external = "UTF-8"
-
 
 $:.unshift File.join(File.dirname(__FILE__), '..', 'lib')
+require 'trollop'
 require 'rubyfca'
+require 'ruby_graphviz'
 
 ################ parse options ##########
 
 opts = Trollop::options do
-  version RubyFCA::VERSION
+  version = File.read(File.dirname(__FILE__) + "/../VERSION")
   banner <<-EOS
   
 RubuFCA converts Conexp CXT data to Graphviz dot format.
@@ -19,24 +18,19 @@ Usage:
 
 where:
 <source file>
-       ".cxt", ".csv"
+       ".cxt"
 <output file>
        ."dot", ".png", ".jpg", or ".eps"
 [options]:
 EOS
 
+  opt :circle,  "Use circle shaped concept nodes", :default=> false
   opt :full, "Do not contract concept labels", :default=> false
-  opt :coloring, "Color concept nodes [0 = none (default), 1 = lightblue/pink, 2 = monochrome]", :default => 0
-  opt :straight, "Straighten edges (available when output format is either png, jpg, svg, pdf, or eps)", :default => false
-  opt :nodesep, "Size of separation between sister nodes (from 0.1 to 5.0)", :default => 0.4
-  opt :ranksep, "Size of separation between ranks (from 0.1 to 5.0)", :default => 0.2
   opt :legend, "Print the legend of concept nodes (available only when using circle node shape)", :default => false
-  opt :circle,  "Use circle shaped concept nodes", :default=> false
-
+  opt :coloring, "Color concept nodes", :default => false
+  opt :straight, "Straighten edges (available when output format is either png, jpg, or eps)", :default => false
 end
-Trollop::die :coloring, "must be 0, 1, or 2" if (opts[:coloring] > 2 || opts[:coloring] < 0)
-Trollop::die :ranksep,  "must be within 0.1 - 5.0" if (opts[:ranksep] < 0.1 || opts[:ranksep] > 5.0)
-Trollop::die :nodesep,  "must be within 0.1 - 5.0" if (opts[:nodesep] < 0.1 || opts[:nodesep] > 5.0)
+
 ############### main program ############### 
 
 if ARGV.size != 2
@@ -52,17 +46,15 @@ filename2 = ARGV[1]  #output filename
 input_type  = filename1.slice(/\.[^\.]+\z/).split(//)[1..-1].join("")
 output_type = filename2.slice(/\.[^\.]+\z/).split(//)[1..-1].join("")
 
-if (input_type !~ /\A(cxt|csv)\z/ || output_type !~ /\A(dot|png|jpg|svg|pdf|eps)\z/)
+if (input_type !~ /\A(cxt|csv)\z/ || output_type !~ /\A(dot|png|jpg|eps)\z/)
   showerror("These file extensions are not (yet) supported.", 1)
 end
 
 #
-# input data is kept as plain text
+# input cxt data is kept as plain text
 #
-f = File.open(filename1, "r:UTF-8:UTF-8")
-
+f = File.open(filename1, "r")
 inputdata = f.read
-inputdata.gsub!(/\r\n?/){"\n"}
 f.close
 
 #
@@ -80,7 +72,7 @@ end
 # context data is converted to a hash table
 #
 begin
-  ctxt = FormalContext.new(inputdata, input_type, !opts[:full])
+  ctxt = FormalContext.new(inputdata, opts[:full])
   ctxt.calcurate
 # rescue => e
 #   puts e
@@ -99,10 +91,6 @@ when "png"
   ctxt.generate_img(filename2, "png", opts)
 when "jpg"
   ctxt.generate_img(filename2, "jpg", opts)
-when "svg"
-  ctxt.generate_img(filename2, "svg", opts)
-when "pdf"
-  ctxt.generate_img(filename2, "pdf", opts)
 when "eps"
   ctxt.generate_img(filename2, "eps", opts)
 end

data/lib/{rubyfca/ruby_graphviz.rb → ruby_graphviz.rb}

@@ -1,6 +1,3 @@
-#!/usr/bin/env ruby
-# -*- coding: utf-8 -*-
-
 ## lib/ruby_graphviz.rb -- graphviz dot generator library
 ## Author::    Yoichiro Hasebe (mailto: yohasebe@gmail.com)
 ## Copyright:: Copyright 2009 Yoichiro Hasebe

data/lib/rubyfca.rb

@@ -1,18 +1,11 @@
-#!/usr/bin/env ruby
-# -*- coding: utf-8 -*-
-
 ## lib/rubyfca.rb -- Formal Concept Analysis tool in Ruby
 ## Author::    Yoichiro Hasebe (mailto: yohasebe@gmail.com)
 ##             Kow Kuroda (mailto: kuroda@nict.go.jp)   
 ## Copyright:: Copyright 2009 Yoichiro Hasebe and Kow Kuroda
 ## License::   GNU GPL version 3
 
-$: << File.dirname(__FILE__) + "/rubyfca"
-
-require 'csv'
+$KCODE ='utf-8'
 require 'ruby_graphviz'
-require 'version'
-require 'trollop'
 
 private
 
@@ -46,65 +39,22 @@ end
 class FormalContext
 
   ## Converte cxt data to three basic structures of objects, attributes, and matrix
-  def initialize(input, mode, label_contraction = false)
+  def initialize(input, label_contraction = true)
     if input.size == 0
       showerror("File is empty", 1)
     end
-    input.gsub!(" ", "&nbsp;")
-    # begin
-      case mode
-      when /cxt\z/
-        read_cxt(input)
-      when /csv\z/
-        read_csv(input)
-      end
-    # rescue => e
-    #   showerror("Input data contains a syntax problem.", 1)
-    # end
-    @label_contraction = label_contraction
-  end
-  
-  ## process cxt data
-  def read_cxt(input)
     lines = input.split
     t1 = 3
     if (lines[0] !~ /B/i || (2 * lines[1].to_i + lines[2].to_i + t1) != lines.size)
       showerror("Wrong cxt format!", 1)
     end
+    
+    @label_contraction = label_contraction
+    
     @objects    = lines[t1..(lines[1].to_i + t1 - 1)]
     @attributes = lines[(lines[1].to_i + t1) .. (lines[1].to_i + lines[2].to_i + t1 - 1)]
     lines      = lines[(lines[1].to_i + lines[2].to_i + t1) .. lines.size]
-    @matrix     = changecrosssymbol("X", "\\.", lines)    
-  end
-  
-  # process csv data using the standard csv library
-  def read_csv(input)
-    input = remove_blank(input)
-    data = CSV.parse(input)
-    @objects = trim_ary(data.transpose.first[1..-1])
-    @attributes = trim_ary(data.first[1..-1])
-    @matrix = []
-    data[1..-1].each do |line|
-      @matrix << line[1..-1].collect { |cell| /x/i =~ cell ? 1 : 0 }
-    end
-  end
-  
-  def remove_blank(input)
-    blank_removed = ""
-    input.split("\n").each do |line|
-      line = line.strip
-      unless /\A\s*\z/ =~ line
-        blank_removed << line + "\n"
-      end
-    end
-    blank_removed
-  end
-  
-  def trim_ary(ary)
-    newary = ary.collect do |cell|
-      cell.strip
-    end
-    newary
+    @matrix     = changecrosssymbol("X", "\\.", lines)
   end
   
   ## Apply a formal concept analysis on the matrix
@@ -201,8 +151,8 @@ class FormalContext
     a1 = extension[0].join("")
     a2 = extension[1].join("")
     if a1 == a2
-      extension.shift
-      intension.shift
+      shift extension
+      shift intension
       anzCpt -= 1
     end
 
@@ -334,9 +284,8 @@ class FormalContext
   ## For options, see 'rubyfca'
   def generate_dot(opts)
     index_max_width = @concepts.size.to_s.split(//).size
-     nodesep = opts[:nodesep] ? opts[:nodesep].to_s : "0.4"
-     ranksep = opts[:ranksep] ? opts[:ranksep].to_s : "0.2"
-    clattice = RubyGraphviz.new("clattice", :rankdir => "", :nodesep => nodesep, :ranksep => ranksep)
+
+    clattice = RubyGraphviz.new("clattice", :rankdir => "", :nodesep => "0.4", :ranksep => "0.2")
 
     if opts[:circle] and opts[:legend]
       legend   = RubyGraphviz.new("legend", :rankdir => "TB", :lebelloc => "t", :centered => "false")
@@ -360,9 +309,7 @@ class FormalContext
       attrfull = []  
       0.upto(@gammaM.size - 1) do |j|
         if @gammaM[j][i] == 2
-	        # pointing finger does not appear correctly in eps... 
-          # obj = opts[:full] ? @objects[j] + " " + [0x261C].pack("U") : @objects[j]
-          obj = opts[:full] ? @objects[j] + "*" : @objects[j]
+          obj = opts[:full] ? @objects[j] + " " + [0x261C].pack("U") : @objects[j] 
           objfull << obj
         elsif @gammaM[j][i] == 1
           objfull << @objects[j]
@@ -370,9 +317,7 @@ class FormalContext
       end
       0.upto(@muM.size - 1) do |k|
         if @muM[k][i] == 2
-	        # pointing finger does not appear correctly in eps... 
-          # att = opts[:full] ? @attributes[k] + " " + [0x261C].pack("U") : @attributes[k]
-          att = opts[:full] ? @attributes[k] + "*" : @attributes[k]
+          att = opts[:full] ? @attributes[k] + " " + [0x261C].pack("U") : @attributes[k] 
           attrfull << att
         elsif @muM[k][i] == 1
           attrfull << @attributes[k]
@@ -383,25 +328,10 @@ class FormalContext
 
       attr_str = attrfull.join('<br />')
       attr_str = attr_str == "" ? "     " : attr_str
-      
-      if opts[:coloring] == 0 or /\A\s+\z/ =~ attr_str
-        attr_color = "white"
-      elsif opts[:coloring] == 1
-        attr_color = "lightblue"
-      elsif opts[:coloring] == 2
-        attr_color = "gray87"
-      end
-      
+      attr_color = (!opts[:coloring] || /\A\s+\z/ =~ attr_str) ? "white" : "lightblue"
       obj_str = objfull.join('<br />')
       obj_str = obj_str == "" ? "     " : obj_str
-
-      if opts[:coloring] == 0 or /\A\s+\z/ =~ obj_str
-        obj_color = "white"
-      elsif opts[:coloring] == 1
-        obj_color = "pink"
-      elsif opts[:coloring] == 2
-        obj_color = "gray92"
-      end
+      obj_color = (!opts[:coloring] || /\A\s+\z/ =~ obj_str) ? "white" : "pink"
 
       label = "<<table border=\"0\" cellborder=\"1\" cellspacing=\"0\">" + 
       "<tr><td balign=\"left\" align=\"left\" bgcolor=\"#{attr_color}\">#{attr_str}</td></tr>" +
@@ -415,7 +345,7 @@ class FormalContext
         "<tr><td balign=\"left\" align=\"left\" bgcolor=\"#{obj_color}\">#{obj_str}</td></tr>" +
         "</table>>"
 
-        if !attrfull.empty? or !objfull.empty?
+        if !attrfull.empty? and !objfull.empty?
           legend.node("cl#{concept_id}k", :label => concept_id, :style => "invis")
           legend.node("cl#{concept_id}v", :label => leg, :fillcolor => "white")
           legend.rank("cl#{concept_id}k", "cl#{concept_id}v", :style => "invis", :length => "0.0")

data/lib/{rubyfca/trollop.rb → trollop.rb}

@@ -413,7 +413,7 @@ class Parser
 
   ## Print the help message to +stream+.
   def educate stream=$stdout
-    width # just calcurate it now; otherwise we have to be careful not to
+    width # just calculate it now; otherwise we have to be careful not to
           # call this unless the cursor's at the beginning of a line.
 
     left = {}

data/rubyfca.gemspec

@@ -1,17 +1,59 @@
+# Generated by jeweler
+# DO NOT EDIT THIS FILE
+# Instead, edit Jeweler::Tasks in Rakefile, and run `rake gemspec`
 # -*- encoding: utf-8 -*-
-require File.expand_path('../lib/rubyfca/version', __FILE__)
 
-Gem::Specification.new do |gem|
-  gem.authors       = ["Yoichiro Hasebe", "Kow Kuroda"]
-  gem.email         = ["yohasebe@gmail.com"]
-  gem.summary         = %q{Command line FCA tool written in Ruby}  
-  gem.description     = %q{Command line Formal Concept Analysis (FCA) tool written in Ruby}  
-  gem.homepage        = "http://github.com/yohasebe/rubyfca"  
+Gem::Specification.new do |s|
+  s.name = %q{rubyfca}
+  s.version = "0.2.4"
 
-  gem.files         = `git ls-files`.split($\)
-  gem.executables   = gem.files.grep(%r{^bin/}).map{ |f| File.basename(f) }
-  gem.test_files    = gem.files.grep(%r{^(test|spec|features)/})
-  gem.name          = "rubyfca"  
-  gem.require_paths = ["lib"]
-  gem.version       = RubyFCA::VERSION  
+  s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
+  s.authors = ["Yoichiro Hasebe", "Kow Kuroda"]
+  s.date = %q{2009-09-04}
+  s.default_executable = %q{rubyfca}
+  s.description = %q{Command line Formal Concept Ananlysis (FCA) tool written in Ruby}
+  s.email = %q{yohasebe@gmail.com}
+  s.executables = ["rubyfca"]
+  s.extra_rdoc_files = [
+    "LICENSE",
+     "README.rdoc"
+  ]
+  s.files = [
+    ".document",
+     ".gitignore",
+     "LICENSE",
+     "README.rdoc",
+     "Rakefile",
+     "VERSION",
+     "bin/rubyfca",
+     "lib/ruby_graphviz.rb",
+     "lib/rubyfca.rb",
+     "lib/trollop.rb",
+     "rubyfca.gemspec",
+     "test/rubyfca_test.rb",
+     "test/test_data.cxt",
+     "test/test_helper.rb"
+  ]
+  s.homepage = %q{http://github.com/yohasebe/rubyfca}
+  s.rdoc_options = ["--charset=UTF-8"]
+  s.require_paths = ["lib"]
+  s.rubygems_version = %q{1.3.5}
+  s.summary = %q{Command line Formal Concept Analysis (FCA) tool written in Ruby}
+  s.test_files = [
+    "test/rubyfca_test.rb",
+     "test/test_helper.rb"
+  ]
+
+  if s.respond_to? :specification_version then
+    current_version = Gem::Specification::CURRENT_SPECIFICATION_VERSION
+    s.specification_version = 3
+
+    if Gem::Version.new(Gem::RubyGemsVersion) >= Gem::Version.new('1.2.0') then
+      s.add_development_dependency(%q<thoughtbot-shoulda>, [">= 0"])
+    else
+      s.add_dependency(%q<thoughtbot-shoulda>, [">= 0"])
+    end
+  else
+    s.add_dependency(%q<thoughtbot-shoulda>, [">= 0"])
+  end
 end

data/test/test_data.cxt

@@ -8,18 +8,18 @@ Sparrow
 Eagle
 Lion
 Bonobo
-Human being
+Human
 bird
 mammal
 ape
 flying
 preying
 talking
-XXX...
-...XXX
-....XX
+X.....
+X..X..
+X..XX.
+.X..X.
 .XX...
-..XX..
-.....X
+.XX..X
 
 

metadata

@@ -1,65 +1,80 @@
---- !ruby/object:Gem::Specification
+--- !ruby/object:Gem::Specification 
 name: rubyfca
-version: !ruby/object:Gem::Version
-  version: 0.2.2
+version: !ruby/object:Gem::Version 
+  version: 0.2.4
 platform: ruby
-authors:
+authors: 
 - Yoichiro Hasebe
 - Kow Kuroda
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2015-05-28 00:00:00.000000000 Z
-dependencies: []
-description: Command line Formal Concept Analysis (FCA) tool written in Ruby
-email:
-- yohasebe@gmail.com
-executables:
+
+date: 2009-09-04 00:00:00 +09:00
+default_executable: rubyfca
+dependencies: 
+- !ruby/object:Gem::Dependency 
+  name: thoughtbot-shoulda
+  type: :development
+  version_requirement: 
+  version_requirements: !ruby/object:Gem::Requirement 
+    requirements: 
+    - - ">="
+      - !ruby/object:Gem::Version 
+        version: "0"
+    version: 
+description: Command line Formal Concept Ananlysis (FCA) tool written in Ruby
+email: yohasebe@gmail.com
+executables: 
 - rubyfca
 extensions: []
-extra_rdoc_files: []
-files:
-- ".document"
-- ".gitignore"
-- Gemfile
+
+extra_rdoc_files: 
+- LICENSE
+- README.rdoc
+files: 
+- .document
+- .gitignore
 - LICENSE
 - README.rdoc
 - Rakefile
+- VERSION
 - bin/rubyfca
+- lib/ruby_graphviz.rb
 - lib/rubyfca.rb
-- lib/rubyfca/ruby_graphviz.rb
-- lib/rubyfca/trollop.rb
-- lib/rubyfca/version.rb
+- lib/trollop.rb
 - rubyfca.gemspec
 - test/rubyfca_test.rb
-- test/test_data.csv
 - test/test_data.cxt
 - test/test_helper.rb
+has_rdoc: true
 homepage: http://github.com/yohasebe/rubyfca
 licenses: []
-metadata: {}
+
 post_install_message: 
-rdoc_options: []
-require_paths:
+rdoc_options: 
+- --charset=UTF-8
+require_paths: 
 - lib
-required_ruby_version: !ruby/object:Gem::Requirement
-  requirements:
+required_ruby_version: !ruby/object:Gem::Requirement 
+  requirements: 
   - - ">="
-    - !ruby/object:Gem::Version
-      version: '0'
-required_rubygems_version: !ruby/object:Gem::Requirement
-  requirements:
+    - !ruby/object:Gem::Version 
+      version: "0"
+  version: 
+required_rubygems_version: !ruby/object:Gem::Requirement 
+  requirements: 
   - - ">="
-    - !ruby/object:Gem::Version
-      version: '0'
+    - !ruby/object:Gem::Version 
+      version: "0"
+  version: 
 requirements: []
+
 rubyforge_project: 
-rubygems_version: 2.4.5
+rubygems_version: 1.3.5
 signing_key: 
-specification_version: 4
-summary: Command line FCA tool written in Ruby
-test_files:
+specification_version: 3
+summary: Command line Formal Concept Analysis (FCA) tool written in Ruby
+test_files: 
 - test/rubyfca_test.rb
-- test/test_data.csv
-- test/test_data.cxt
 - test/test_helper.rb

checksums.yaml

@@ -1,7 +0,0 @@
----
-SHA1:
-  metadata.gz: 1a7c7bc3a45c296b6a2a7447106284ff7cef7871
-  data.tar.gz: d5da0d7b0dffe7d8b33dd662133222bbe0720c10
-SHA512:
-  metadata.gz: 99a30f945baf45ec345c9ed614b9de725a743784f09136434117db65d6e2a7bef10ccf3cd9131eb28d1d5364efa9bf8d464e9ff939bbe789ef81a0ea2b2b109f
-  data.tar.gz: 4642dbe52edc0c57d17f3d8401f8531a29b2019327180114d9d7e38a375d76f858d6801e359036151bc88cdffe7186a17ea55a84754d64b41919afa747c1adeb

data/Gemfile

@@ -1,4 +0,0 @@
-source 'https://rubygems.org'
-# gem "trollop"
-# Specify your gem's dependencies in ..gemspec
-gemspec

data/lib/rubyfca/version.rb

@@ -1,3 +0,0 @@
-module RubyFCA
-  VERSION = "0.2.2"
-end

data/test/test_data.csv

@@ -1,7 +0,0 @@
-       ,Ostrich, Sparrow, Eagle, Lion, Bonobo, Human being
-bird   ,X,X,X,.,.,.
-mammal ,.,.,.,X,X,X
-ape    ,.,.,.,.,X,X
-flying ,.,X,X,.,.,.
-preying,.,.,X,X,.,.
-talking,.,.,.,.,.,X