ruby_native_statistics 0.8 → 0.8.2

checksums.yaml

@@ -1,7 +1,7 @@
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data/.github/workflows/main.yml

@@ -0,0 +1,41 @@
+name: Test suite
+
+on:
+  - push
+
+env:
+  CI: true
+
+jobs:
+  run-tests:
+    name: Run tests
+    runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        ruby:
+          - 2.4.9
+          - 2.5.7
+          - 2.6.5
+          - 2.7.0
+    steps:
+      - name: Setup Ruby
+        uses: eregon/use-ruby-action@master
+        with:
+          ruby-version: ${{ matrix.ruby }}
+
+      - name: Checkout
+        uses: actions/checkout@master
+
+      - name: Install Bundler
+        run: gem install bundler -v 2.1.2
+
+      - name: Install gems
+        run: bundle
+
+      - name: Run tests
+        run: rake
+
+      - name: Coveralls
+        uses: coverallsapp/github-action@master
+        with:
+          github-token: ${{ secrets.GITHUB_TOKEN }}

data/.gitignore

@@ -10,10 +10,27 @@
 /test/version_tmp/
 /tmp/
 
+# Used by dotenv library to load environment variables.
+# .env
+
+# Ignore Byebug command history file.
+.byebug_history
+
 ## Specific to RubyMotion:
 .dat*
 .repl_history
 build/
+*.bridgesupport
+build-iPhoneOS/
+build-iPhoneSimulator/
+
+## Specific to RubyMotion (use of CocoaPods):
+#
+# We recommend against adding the Pods directory to your .gitignore. However
+# you should judge for yourself, the pros and cons are mentioned at:
+# https://guides.cocoapods.org/using/using-cocoapods.html#should-i-check-the-pods-directory-into-source-control
+#
+# vendor/Pods/
 
 ## Documentation cache and generated files:
 /.yardoc/
@@ -28,12 +45,14 @@ build/
 
 # for a library or gem, you might want to ignore these files since the code is
 # intended to run in multiple environments; otherwise, check them in:
-Gemfile.lock
-.ruby-version
-.ruby-gemset
+# Gemfile.lock
+# .ruby-version
+# .ruby-gemset
 
 # unless supporting rvm < 1.11.0 or doing something fancy, ignore this:
 .rvmrc
-*.bundle
 
-.env
+# Used by RuboCop. Remote config files pulled in from inherit_from directive.
+# .rubocop-https?--*
+
+*.bundle

data/.vscode/settings.json

@@ -0,0 +1,7 @@
+{
+  "editor.formatOnSave": true,
+  "editor.tabSize": 2,
+  "search.useGlobalIgnoreFiles": true,
+  "editor.wordWrap": "on",
+  "editor.renderWhitespace": "all"
+}

data/Gemfile

@@ -1,3 +1,9 @@
-source 'https://rubygems.org'
+source "https://rubygems.org"
 
 gemspec
+
+gem "rake", "~> 12.0"
+gem "minitest", "~> 5.0"
+gem "rake-compiler", "~> 1.1"
+gem "simplecov", "~> 0.17", require: false
+gem "simplecov-lcov", "~> 0.7", require: false

data/Gemfile.lock

@@ -0,0 +1,34 @@
+PATH
+  remote: .
+  specs:
+    ruby_native_statistics (0.8)
+
+GEM
+  remote: https://rubygems.org/
+  specs:
+    docile (1.3.2)
+    json (2.3.0)
+    minitest (5.13.0)
+    rake (12.3.3)
+    rake-compiler (1.1.0)
+      rake
+    simplecov (0.17.1)
+      docile (~> 1.1)
+      json (>= 1.8, < 3)
+      simplecov-html (~> 0.10.0)
+    simplecov-html (0.10.2)
+    simplecov-lcov (0.7.0)
+
+PLATFORMS
+  ruby
+
+DEPENDENCIES
+  minitest (~> 5.0)
+  rake (~> 12.0)
+  rake-compiler (~> 1.1)
+  ruby_native_statistics!
+  simplecov (~> 0.17)
+  simplecov-lcov (~> 0.7)
+
+BUNDLED WITH
+   2.1.2

data/README.md

@@ -1,21 +1,19 @@
-# Ruby Native Statistics
-
-[![Build Status](https://travis-ci.org/corybuecker/ruby-native-statistics.svg)](https://travis-ci.org/corybuecker/ruby-native-statistics)
+# Ruby Native Statistics ![](https://github.com/corybuecker/ruby-native-statistics/workflows/Test%20suite/badge.svg) [![Coverage Status](https://coveralls.io/repos/github/corybuecker/ruby-native-statistics/badge.svg?branch=master)](https://coveralls.io/github/corybuecker/ruby-native-statistics?branch=master)
 
 This is a native extension to Ruby that adds native (C) statistical functions to the Array class. At present the following functions are provided:
 
-* [Sample Standard Deviation](https://en.wikipedia.org/wiki/Standard_deviation#Corrected_sample_standard_deviation) (stdev, stdevs)
-* [Population Standard Deviation](https://en.wikipedia.org/wiki/Standard_deviation#Uncorrected_sample_standard_deviation) (stdevp)
-* [Sample Variance](https://en.wikipedia.org/wiki/Variance#Population_variance_and_sample_variance) (var)
-* [Population Variance](https://en.wikipedia.org/wiki/Variance#Population_variance_and_sample_variance) (varp)
-* Mean (mean)
+- [Sample Standard Deviation](https://en.wikipedia.org/wiki/Standard_deviation#Corrected_sample_standard_deviation) (stdev, stdevs)
+- [Population Standard Deviation](https://en.wikipedia.org/wiki/Standard_deviation#Uncorrected_sample_standard_deviation) (stdevp)
+- [Sample Variance](https://en.wikipedia.org/wiki/Variance#Population_variance_and_sample_variance) (var)
+- [Population Variance](https://en.wikipedia.org/wiki/Variance#Population_variance_and_sample_variance) (varp)
+- [Mean](https://en.wikipedia.org/wiki/Arithmetic_mean) (mean)
 
-Check the TravisCI build to see the currently supported versions of Ruby. This list will match whatever stable versions are specified at https://www.ruby-lang.org/en/downloads/.
+Check the CircleCI build to see the currently supported versions of Ruby. This list will match whatever stable versions are specified at https://www.ruby-lang.org/en/downloads/.
 
 It is much more performant than calculating the standard deviation with pure Ruby. For a comparison, run the benchmarks with rake.
 
-    bench_native_dispersion  0.000686  0.000628  0.000595  0.000475  0.000590
-    bench_ruby_dispersion    0.002630  0.004559  0.002589  0.002909  0.002812
+    bench_native_dispersion	 0.000425	 0.000341	 0.000420	 0.000324	 0.000319
+    bench_ruby_dispersion	 0.002168	 0.002156	 0.002148	 0.002149	 0.002151
 
 ## Usage
 
@@ -27,7 +25,7 @@ It is much more performant than calculating the standard deviation with pure Rub
 
     # calculate population standard deviation
     p r.stdevp
-    
+
     # calculate mean
     p r.mean
 
@@ -35,7 +33,7 @@ It is much more performant than calculating the standard deviation with pure Rub
 
 This is the third version of this gem, and it is a total rewrite of a SWIG-based design. Lots of thanks to the following resources:
 
-* https://blog.jcoglan.com/2012/07/29/your-first-ruby-native-extension-c/
-* https://github.com/andremedeiros/ruby-c-cheat-sheet
-* http://silverhammermba.github.io/emberb/c/
-* http://docs.ruby-lang.org/en/2.3.0/extension_rdoc.html
+- https://blog.jcoglan.com/2012/07/29/your-first-ruby-native-extension-c/
+- https://github.com/andremedeiros/ruby-c-cheat-sheet
+- http://silverhammermba.github.io/emberb/c/
+- http://docs.ruby-lang.org/en/2.3.0/extension_rdoc.html

data/Rakefile

@@ -1,13 +1,24 @@
-require "bundler/gem_tasks"
+require "rake/extensiontask"
 require "rake/testtask"
-require 'rake/extensiontask'
+
+Rake::ExtensionTask.new "dispersion" do |ext|
+  ext.lib_dir = "lib"
+end
+
+Rake::ExtensionTask.new "mathematics" do |ext|
+  ext.lib_dir = "lib"
+end
 
 Rake::TestTask.new(:test) do |t|
   t.libs << "test"
   t.libs << "lib"
-  t.test_files = FileList['test/**/*_test.rb', "test/**/*_benchmark.rb"]
+  t.test_files = FileList["test/**/*_test.rb"]
 end
 
-Rake::ExtensionTask.new("dispersion")
+Rake::TestTask.new(:benchmark) do |t|
+  t.libs << "test"
+  t.libs << "lib"
+  t.test_files = FileList["test/**/*_benchmark.rb"]
+end
 
 task :default => [:compile, :test]

data/changelog.md

@@ -1,3 +1,13 @@
+# Version 0.8.2
+
+- Bug fix for build process
+
+# Version 0.8.1
+
+- Internal and build-related changes only
+
+Yanked due to a bug introduced in the build.
+
 # Version 0.8
 
-* Added mean method
+- Added mean method

data/ext/dispersion/dispersion.c

@@ -1,5 +1,6 @@
 #include "ruby.h"
 #include "dispersion.h"
+#include "../mathematics/mathematics.h"
 
 void Init_dispersion() {
   DispersionModule = rb_define_module("Dispersion");
@@ -8,35 +9,6 @@ void Init_dispersion() {
   rb_define_method(DispersionModule, "stdevp", rb_population_standard_deviation, 0);
   rb_define_method(DispersionModule, "var", rb_sample_variance, 0);
   rb_define_method(DispersionModule, "varp", rb_population_variance, 0);
-  rb_define_method(DispersionModule, "mean", rb_mean, 0);
-}
-
-double calculate_mean(VALUE array, unsigned long array_length){
-  unsigned long i;
-  double total = 0;
-  double mean = 0;
-
-  for(i = 0; i < array_length; i++){
-    total += rb_num2dbl(rb_ary_entry(array, i));
-  }
-
-  mean = total / array_length;
-
-  return mean;
-}
-
-double calculate_total_distance_from_mean(VALUE array, unsigned long array_length){
-  unsigned long i;
-  double mean = 0;
-  double total_distance_from_mean = 0;
-
-  mean = calculate_mean(array, array_length);
-
-  for(i = 0; i < array_length; i++){
-    total_distance_from_mean += pow((rb_num2dbl(rb_ary_entry(array, i)) - mean), 2);
-  }
-
-  return total_distance_from_mean;
 }
 
 VALUE rb_sample_standard_deviation(VALUE self) {
@@ -94,18 +66,3 @@ VALUE rb_population_variance(VALUE self) {
 
   return DBL2NUM(calculate_total_distance_from_mean(self, array_length) / array_length);
 }
-
-VALUE rb_mean(VALUE self) {
-  unsigned int array_length;
-
-  Check_Type(self, T_ARRAY);
-
-  array_length = rb_long2int(RARRAY_LEN(self));
-
-  if (array_length <= 0) {
-    rb_raise(rb_eRangeError, "array must have at least one element");
-  }
-
-  return DBL2NUM(calculate_mean(self, array_length));
-}
-

data/ext/dispersion/dispersion.h

@@ -1,8 +1,5 @@
 VALUE DispersionModule = Qnil;
-VALUE rb_mean(VALUE self);
 VALUE rb_sample_standard_deviation(VALUE self);
 VALUE rb_population_standard_deviation(VALUE self);
 VALUE rb_sample_variance(VALUE self);
 VALUE rb_population_variance(VALUE self);
-double calculate_mean(VALUE array, unsigned long array_length);
-double calculate_total_distance_from_mean(VALUE array, unsigned long array_length);

data/ext/dispersion/extconf.rb

@@ -1,2 +1,3 @@
-require 'mkmf'
-create_makefile("dispersion")
+require "mkmf"
+
+create_makefile "dispersion"

data/ext/mathematics/extconf.rb

@@ -0,0 +1,5 @@
+require "mkmf"
+
+abort "missing pow()" unless have_func "pow"
+
+create_makefile "mathematics"

data/ext/mathematics/mathematics.c

@@ -0,0 +1,50 @@
+#include "ruby.h"
+#include "mathematics.h"
+
+void Init_mathematics() {
+  MathematicsModule = rb_define_module("Mathematics");
+  rb_define_method(MathematicsModule, "mean", rb_mean, 0);
+}
+
+double calculate_mean(VALUE array, unsigned long array_length){
+  unsigned long i;
+  double total = 0;
+  double mean = 0;
+
+  for(i = 0; i < array_length; i++){
+    total += rb_num2dbl(rb_ary_entry(array, i));
+  }
+
+  mean = total / array_length;
+
+  return mean;
+}
+
+double calculate_total_distance_from_mean(VALUE array, unsigned long array_length){
+  unsigned long i;
+  double mean = 0;
+  double total_distance_from_mean = 0;
+
+  mean = calculate_mean(array, array_length);
+
+  for(i = 0; i < array_length; i++){
+    total_distance_from_mean += pow((rb_num2dbl(rb_ary_entry(array, i)) - mean), 2);
+  }
+
+  return total_distance_from_mean;
+}
+
+VALUE rb_mean(VALUE self) {
+  unsigned int array_length;
+
+  Check_Type(self, T_ARRAY);
+
+  array_length = rb_long2int(RARRAY_LEN(self));
+
+  if (array_length <= 0) {
+    rb_raise(rb_eRangeError, "array must have at least one element");
+  }
+
+  return DBL2NUM(calculate_mean(self, array_length));
+}
+

data/ext/mathematics/mathematics.h

@@ -0,0 +1,4 @@
+VALUE MathematicsModule = Qnil;
+VALUE rb_mean(VALUE self);
+double calculate_mean(VALUE array, unsigned long array_length);
+double calculate_total_distance_from_mean(VALUE array, unsigned long array_length);

data/lib/ruby_native_statistics/version.rb

@@ -1,3 +1,3 @@
 module RubyNativeStatistics
-  VERSION = "0.8"
+  VERSION = "0.8.2"
 end

data/lib/ruby_native_statistics.rb

@@ -1,6 +1,8 @@
 require "ruby_native_statistics/version"
+require "mathematics"
 require "dispersion"
 
 class Array
+  include Mathematics
   include Dispersion
 end

data/ruby_native_statistics.gemspec

@@ -1,26 +1,25 @@
-# coding: utf-8
-lib = File.expand_path('../lib', __FILE__)
-$LOAD_PATH.unshift(lib) unless $LOAD_PATH.include?(lib)
-require 'ruby_native_statistics/version'
+require_relative "lib/ruby_native_statistics/version"
 
 Gem::Specification.new do |spec|
-  spec.name          = "ruby_native_statistics"
-  spec.version       = RubyNativeStatistics::VERSION
-  spec.authors       = ["Cory Buecker"]
-  spec.email         = ["email@corybuecker.com"]
-  spec.license       = "Unlicense"
-  spec.summary       = "This is a native extension to Ruby that adds various statistical functions to the Array class."
-  spec.homepage      = "https://github.com/corybuecker/ruby-native-statistics"
+  spec.name = "ruby_native_statistics"
+  spec.version = RubyNativeStatistics::VERSION
+  spec.authors = ["Cory Buecker"]
+  spec.email = ["cory.buecker@gmail.com"]
 
-  spec.metadata['allowed_push_host'] = "https://rubygems.org"
+  spec.license = "Unlicense"
+  spec.summary = "This is a native extension to Ruby that adds various statistical functions to the Array class."
+  spec.homepage = "https://github.com/corybuecker/ruby-native-statistics"
 
-  spec.files         = `git ls-files -z`.split("\x0").reject { |f| f.match(%r{^(test|spec|features)/}) }
-  spec.require_paths = ["lib"]
+  spec.required_ruby_version = Gem::Requirement.new(">= 2.4.9")
+
+  spec.metadata["allowed_push_host"] = "https://rubygems.org"
 
-  spec.extensions << "ext/dispersion/extconf.rb"
+  spec.metadata["homepage_uri"] = spec.homepage
+  spec.metadata["source_code_uri"] = spec.homepage
+  spec.metadata["changelog_uri"] = "#{spec.homepage}/changelog.md"
+
+  spec.files = `git ls-files -z`.split("\x0").reject { |f| f.match(%r{^(test|spec|features)/}) }
+  spec.require_paths = ["lib"]
 
-  spec.add_development_dependency "bundler", "~> 1.11"
-  spec.add_development_dependency "rake", "~> 11.0"
-  spec.add_development_dependency "minitest", "~> 5.0"
-  spec.add_development_dependency "rake-compiler", "~> 0.9"
+  spec.extensions = %w[ext/mathematics/extconf.rb ext/dispersion/extconf.rb]
 end

metadata

@@ -1,82 +1,29 @@
 --- !ruby/object:Gem::Specification
 name: ruby_native_statistics
 version: !ruby/object:Gem::Version
-  version: '0.8'
+  version: 0.8.2
 platform: ruby
 authors:
 - Cory Buecker
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2017-04-13 00:00:00.000000000 Z
-dependencies:
-- !ruby/object:Gem::Dependency
-  name: bundler
-  requirement: !ruby/object:Gem::Requirement
-    requirements:
-    - - "~>"
-      - !ruby/object:Gem::Version
-        version: '1.11'
-  type: :development
-  prerelease: false
-  version_requirements: !ruby/object:Gem::Requirement
-    requirements:
-    - - "~>"
-      - !ruby/object:Gem::Version
-        version: '1.11'
-- !ruby/object:Gem::Dependency
-  name: rake
-  requirement: !ruby/object:Gem::Requirement
-    requirements:
-    - - "~>"
-      - !ruby/object:Gem::Version
-        version: '11.0'
-  type: :development
-  prerelease: false
-  version_requirements: !ruby/object:Gem::Requirement
-    requirements:
-    - - "~>"
-      - !ruby/object:Gem::Version
-        version: '11.0'
-- !ruby/object:Gem::Dependency
-  name: minitest
-  requirement: !ruby/object:Gem::Requirement
-    requirements:
-    - - "~>"
-      - !ruby/object:Gem::Version
-        version: '5.0'
-  type: :development
-  prerelease: false
-  version_requirements: !ruby/object:Gem::Requirement
-    requirements:
-    - - "~>"
-      - !ruby/object:Gem::Version
-        version: '5.0'
-- !ruby/object:Gem::Dependency
-  name: rake-compiler
-  requirement: !ruby/object:Gem::Requirement
-    requirements:
-    - - "~>"
-      - !ruby/object:Gem::Version
-        version: '0.9'
-  type: :development
-  prerelease: false
-  version_requirements: !ruby/object:Gem::Requirement
-    requirements:
-    - - "~>"
-      - !ruby/object:Gem::Version
-        version: '0.9'
+date: 2020-01-11 00:00:00.000000000 Z
+dependencies: []
 description: 
 email:
-- email@corybuecker.com
+- cory.buecker@gmail.com
 executables: []
 extensions:
+- ext/mathematics/extconf.rb
 - ext/dispersion/extconf.rb
 extra_rdoc_files: []
 files:
+- ".github/workflows/main.yml"
 - ".gitignore"
-- ".travis.yml"
+- ".vscode/settings.json"
 - Gemfile
+- Gemfile.lock
 - LICENSE
 - README.md
 - Rakefile
@@ -84,6 +31,9 @@ files:
 - ext/dispersion/dispersion.c
 - ext/dispersion/dispersion.h
 - ext/dispersion/extconf.rb
+- ext/mathematics/extconf.rb
+- ext/mathematics/mathematics.c
+- ext/mathematics/mathematics.h
 - lib/ruby_native_statistics.rb
 - lib/ruby_native_statistics/version.rb
 - ruby_native_statistics.gemspec
@@ -92,6 +42,9 @@ licenses:
 - Unlicense
 metadata:
   allowed_push_host: https://rubygems.org
+  homepage_uri: https://github.com/corybuecker/ruby-native-statistics
+  source_code_uri: https://github.com/corybuecker/ruby-native-statistics
+  changelog_uri: https://github.com/corybuecker/ruby-native-statistics/changelog.md
 post_install_message: 
 rdoc_options: []
 require_paths:
@@ -100,15 +53,14 @@ required_ruby_version: !ruby/object:Gem::Requirement
   requirements:
   - - ">="
     - !ruby/object:Gem::Version
-      version: '0'
+      version: 2.4.9
 required_rubygems_version: !ruby/object:Gem::Requirement
   requirements:
   - - ">="
     - !ruby/object:Gem::Version
       version: '0'
 requirements: []
-rubyforge_project: 
-rubygems_version: 2.6.11
+rubygems_version: 3.1.2
 signing_key: 
 specification_version: 4
 summary: This is a native extension to Ruby that adds various statistical functions

data/.travis.yml

@@ -1,7 +0,0 @@
-language: ruby
-rvm:
-  - 2.4.1
-  - 2.3.3
-  - 2.2.6
-before_install:
-  - gem install bundler