ruby_astm 1.4.1 → 1.4.3

data/lib/ruby_astm/header.rb

@@ -18,15 +18,13 @@ class Header
 		self.protocol = "ASTM"
 	end	
 
-	def initialize(args)
+	def initialize(args={})
 		self.patients = []
 		self.queries = []
 		self.response_sent = false
 		if line = args[:line]
 			set_machine_name(args)
 			set_protocol(args)
-		else
-			super
 		end
 	end
 
@@ -98,7 +96,7 @@ class Header
 		responses
 	end
 
-	def to_json
+	def to_json(args={})
         hash = {}
         self.instance_variables.each do |x|
             hash[x] = self.instance_variable_get x

data/lib/ruby_astm/lab_interface.rb

@@ -9,33 +9,35 @@ module LabInterface
   CR = "\x13"
   ETX = "\x03"
   EOT = "\x04"
-
-
-  mattr_accessor :ethernet_connections
-  mattr_accessor :serial_connections
-
-  mattr_accessor :ethernet_server
-  mattr_accessor :server_ip
-  mattr_accessor :server_port
-  mattr_accessor :serial_port
-  mattr_accessor :serial_baud
-  mattr_accessor :serial_parity
-  mattr_accessor :usb_port
-  mattr_accessor :usb_baud
-  mattr_accessor :usb_parity
-  mattr_accessor :mid_frame_end_detected
+  
+
+  attr_accessor :ethernet_connections
+  attr_accessor :serial_connections
+
+  attr_accessor :ethernet_server
+  attr_accessor :server_ip
+  attr_accessor :server_port
+  attr_accessor :serial_port
+  attr_accessor :serial_baud
+  attr_accessor :serial_parity
+  attr_accessor :usb_port
+  attr_accessor :usb_baud
+  attr_accessor :usb_parity
+  attr_accessor :mid_frame_end_detected
 
   ## gather bytes to store for us to test.
-  mattr_accessor :test_data_bytes
+  attr_accessor :test_data_bytes
 
+  ## just an array of byte arrays, cleared on calling process text
+  attr_accessor :data_bytes
 
 
-  mattr_accessor :headers
-  mattr_accessor :mapping
-  mattr_accessor :respond_to_queries
+  attr_accessor :headers
+  attr_accessor :mapping
+  attr_accessor :respond_to_queries
 
   ## buffer of incoming data.
-  mattr_accessor :data_buffer
+  attr_accessor :data_buffer
     
 
   ## returns the root directory of the gem.
@@ -166,6 +168,83 @@ module LabInterface
 
       concat
 
+
+
+  end
+
+  def write_bytes_to_file(bytes)
+
+  end
+
+  ## @param[Array] : 
+  ## [[bytes],[bytes]....]
+  def process_electrolytes(data_bytes)
+    #puts "came to process electrolytes_plain_text"
+    byte_arr = data_bytes.flatten
+    #puts "the end part of the arr is"
+    return if byte_arr[-4..-1] != SIEMENS_ELECTROLYTE_END
+    self.data_bytes = []
+    concat = ""
+    byte_arr.each do |byte|
+        x = [byte].pack('c*').force_encoding('UTF-8')
+        if x == "\r"
+          concat+="\n"
+        elsif x == "\n"
+          #puts "new line found --- "
+          concat+=x
+          #puts "last thing in concat."
+          #puts concat[-1].to_s
+        else
+          concat+=x
+        end
+    end
+    ## nwo write concat to file
+    ## File.open("electrolytes_plain_text.txt", 'a+') { |file| file.write(concat) }
+    ## Header
+    ## Patient
+    ## Order
+    ## Result
+    ## Terminator
+
+    ## GET PO2
+    concat.scan(/pCO2\s+(?<pco>(\d+)(\.\d)*)(\^|v)?\s+mmHg/) do |k|
+      n = Regexp.last_match
+      puts n[:pco].to_s
+    end
+
+    ## GET PCO2
+    concat.scan(/pO2\s+(?<po>(\d+)(\.\d)*)(\^|v)?\s+mmHg/) do |k|
+      n = Regexp.last_match
+      puts n[:po].to_s
+    end
+
+    ## GET PH
+
+    ## GET NA+
+
+    ## GET K+
+
+    ## GET CL-
+
+    ## GET PATIENT_ID
+
+    ## GET DATE AND TIME
+
+    start_measure = false
+    
+    concat.split(/\n/).each do |line|
+      if line =~ /348\-D718/
+        header = Header.new({:line => line})
+        self.headers ||= []
+        self.headers << header
+      elsif line =~ /\-{32}/
+      elsif line =~ /Patient\s+ID/
+      elsif line =~ /Measured/
+      elsif line =~ /outside ref/
+      else
+      end
+    end
+
   end
 
 	def receive_data(data)
@@ -182,13 +261,18 @@ module LabInterface
       
    
       byte_arr = data.bytes.to_a
+      
       self.test_data_bytes ||= []
+      
+      self.data_bytes ||= []
+
       self.test_data_bytes.push(byte_arr)
+
+      self.data_bytes.push(byte_arr)
+
     
       concat = pre_process_bytes(byte_arr,concat)
-
-     
-      
+ 
       puts "concat is:"
       
       puts concat.to_s
@@ -197,8 +281,12 @@ module LabInterface
 
       ## if the last byte is EOT, then call process text.
       ## inside that split by line and process one at a time.
-      ##process_text(concat)      
-      
+      ##process_text(concat)   
+      #puts "data bytes -1: #{self.data_bytes[-1]}"
+      #puts "data bytes 0: #{self.data_bytes[0]}"   
+      #if self.data_bytes[0] == ELECTROLYTE_START
+      #self.process_electrolytes(self.data_bytes) 
+      #end
 
       if data.bytes.to_a[-1] == 4
         puts "GOT EOT --- PROCESSING BUFFER, AND CLEARING."

data/lib/ruby_astm/order.rb

@@ -73,7 +73,7 @@ class Order
 		self.action_code = args[:args]
 	end
 
-	def initialize(args)
+	def initialize(args={})
 		set_id(args)
 		set_priority(args)
 		set_sequence_number(args)

data/lib/ruby_astm/patient.rb

@@ -17,7 +17,7 @@ class Patient
 		self.patient_id = args[:patient_id]
 	end
 
-	def initialize(args)
+	def initialize(args={})
 		set_sequence_number(args)
 		set_patient_id(args)
 		self.orders = []

data/lib/ruby_astm/result.rb

@@ -106,7 +106,7 @@ class Result
 	
 
 	## here will call mappings and check the result correlation
-	def initialize(args)
+	def initialize(args={})
 		set_name(args)
 		set_flags(args)
 		set_value(args)

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: ruby_astm
 version: !ruby/object:Gem::Version
-  version: 1.4.1
+  version: 1.4.3
 platform: ruby
 authors:
 - Bhargav Raut
@@ -40,6 +40,20 @@ dependencies:
         version: '0'
 - !ruby/object:Gem::Dependency
   name: activesupport
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - '='
+      - !ruby/object:Gem::Version
+        version: 5.2.3
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - '='
+      - !ruby/object:Gem::Version
+        version: 5.2.3
+- !ruby/object:Gem::Dependency
+  name: json
   requirement: !ruby/object:Gem::Requirement
     requirements:
     - - ">="
@@ -53,7 +67,7 @@ dependencies:
       - !ruby/object:Gem::Version
         version: '0'
 - !ruby/object:Gem::Dependency
-  name: json
+  name: redis
   requirement: !ruby/object:Gem::Requirement
     requirements:
     - - ">="
@@ -67,7 +81,7 @@ dependencies:
       - !ruby/object:Gem::Version
         version: '0'
 - !ruby/object:Gem::Dependency
-  name: redis
+  name: typhoeus
   requirement: !ruby/object:Gem::Requirement
     requirements:
     - - ">="
@@ -108,6 +122,20 @@ dependencies:
     - - '='
       - !ruby/object:Gem::Version
         version: 3.5.2
+- !ruby/object:Gem::Dependency
+  name: rest-firebase
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
 description: This gem provides a server that can handle communication from medical
   instruments that send/receive information on the ASTM protocol.
 email: bhargav.r.raut@gmail.com
@@ -118,13 +146,16 @@ files:
 - lib/mappings.json
 - lib/publisher/adapter.rb
 - lib/publisher/google_lab_interface.rb
+- lib/publisher/pf_lab_interface.rb
 - lib/publisher/poller.rb
+- lib/publisher/real_time_db.rb
 - lib/ruby_astm.rb
 - lib/ruby_astm/HL7/hl7_header.rb
 - lib/ruby_astm/HL7/hl7_observation.rb
 - lib/ruby_astm/HL7/hl7_order.rb
 - lib/ruby_astm/HL7/hl7_patient.rb
 - lib/ruby_astm/astm_server.rb
+- lib/ruby_astm/custom/siemens_abg_electrolyte_server.rb
 - lib/ruby_astm/frame.rb
 - lib/ruby_astm/header.rb
 - lib/ruby_astm/lab_interface.rb
@@ -154,7 +185,7 @@ required_rubygems_version: !ruby/object:Gem::Requirement
       version: '0'
 requirements: []
 rubyforge_project: 
-rubygems_version: 2.7.8
+rubygems_version: 2.6.14.4
 signing_key: 
 specification_version: 4
 summary: A Ruby gem to interface with Medical instruments that work on the ASTM protocol