ruby_astm 1.1.4 → 1.1.5
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- checksums.yaml +4 -4
- data/lib/mappings.json +118 -59
- data/lib/ruby_astm/result.rb +9 -0
- metadata +1 -1
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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1
1
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---
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2
2
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SHA256:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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+
metadata.gz: 433fd3c434412d3e8e82a0aec5f7ea4d02171ec6eb4114f40ba6683167ce76ef
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4
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+
data.tar.gz: 10f9cbfd6ab7153bf671e0e67709dd1a24faea4f430c5c53a9f8089a3f7c0496
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5
5
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SHA512:
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6
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-
metadata.gz:
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|
7
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-
data.tar.gz:
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6
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+
metadata.gz: 453b97c83bfa1c3ab8901a7988168de09f9d97332a69d8a4efb69a783fbf467e28c5d04d620a997400719b8846489f3e71802ec3645546ec31e11b6b8c0db22e
|
|
7
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+
data.tar.gz: 89def7573598d2b8aef88ee880223bc6b03aed1f835abe044a52d2fa05a37bdaa85d55fb8a4b2248d4618a44394613b359157fd753a1973ceebfd6882a51ca54
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data/lib/mappings.json
CHANGED
|
@@ -4,242 +4,301 @@
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4
4
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{
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5
5
|
"LIS_CODE" : "TLCparam",
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6
6
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"TUBE" : "EDTA",
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7
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-
"TRANSFORM" : "(self.value.to_f*1000).to_i.to_s"
|
|
7
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+
"TRANSFORM" : "(self.value.to_f*1000).to_i.to_s",
|
|
8
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+
"REPORT_NAME" : "Hemogram"
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8
9
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},
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9
10
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"RBC" :
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10
11
|
{
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11
12
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"LIS_CODE" : "RBCparam",
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|
12
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-
"TUBE" : "EDTA"
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|
13
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+
"TUBE" : "EDTA",
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14
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+
"REPORT_NAME" : "Hemogram"
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|
13
15
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},
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14
16
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"HGB" :
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15
17
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{
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|
16
18
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"LIS_CODE" : "HBparam",
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17
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-
"TUBE" : "EDTA"
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|
19
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+
"TUBE" : "EDTA",
|
|
20
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+
"REPORT_NAME" : "Hemogram"
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|
18
21
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},
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|
19
22
|
"HCT" : {
|
|
20
23
|
"LIS_CODE" : "HCTparam",
|
|
21
|
-
"TUBE" : "EDTA"
|
|
24
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+
"TUBE" : "EDTA",
|
|
25
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+
"REPORT_NAME" : "Hemogram"
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|
22
26
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},
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|
23
27
|
"MCV" :
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|
24
28
|
{
|
|
25
29
|
"LIS_CODE" : "MCVparam",
|
|
26
|
-
"TUBE" : "EDTA"
|
|
30
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+
"TUBE" : "EDTA",
|
|
31
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+
"REPORT_NAME" : "Hemogram"
|
|
27
32
|
},
|
|
28
33
|
"MCH" : {
|
|
29
34
|
"LIS_CODE" : "MCHparam",
|
|
30
|
-
"TUBE" : "EDTA"
|
|
35
|
+
"TUBE" : "EDTA",
|
|
36
|
+
"REPORT_NAME" : "Hemogram"
|
|
31
37
|
},
|
|
32
38
|
"MCHC": {
|
|
33
39
|
"LIS_CODE" : "MCHCparam",
|
|
34
|
-
"TUBE" : "EDTA"
|
|
40
|
+
"TUBE" : "EDTA",
|
|
41
|
+
"REPORT_NAME" : "Hemogram"
|
|
35
42
|
},
|
|
36
43
|
"PLT" : {
|
|
37
44
|
"LIS_CODE" : "PCparam",
|
|
38
45
|
"TUBE" : "EDTA",
|
|
39
|
-
"TRANSFORM" : "(self.value.to_f*1000).to_i.to_s"
|
|
46
|
+
"TRANSFORM" : "(self.value.to_f*1000).to_i.to_s",
|
|
47
|
+
"REPORT_NAME" : "Hemogram"
|
|
40
48
|
},
|
|
41
49
|
"NEUT%": {
|
|
42
50
|
"LIS_CODE" : "Nparam",
|
|
43
|
-
"TUBE" : "EDTA"
|
|
51
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+
"TUBE" : "EDTA",
|
|
52
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+
"REPORT_NAME" : "Hemogram"
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|
44
53
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},
|
|
45
54
|
"LYMPH%": {
|
|
46
55
|
"LIS_CODE" : "Lparam",
|
|
47
|
-
"TUBE" : "EDTA"
|
|
56
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+
"TUBE" : "EDTA",
|
|
57
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+
"REPORT_NAME" : "Hemogram"
|
|
48
58
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},
|
|
49
59
|
"MONO%": {
|
|
50
60
|
"LIS_CODE" : "Mparam",
|
|
51
|
-
"TUBE" : "EDTA"
|
|
61
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+
"TUBE" : "EDTA",
|
|
62
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+
"REPORT_NAME" : "Hemogram"
|
|
52
63
|
},
|
|
53
64
|
"EO%": {
|
|
54
65
|
"LIS_CODE" : "Eparam",
|
|
55
|
-
"TUBE" : "EDTA"
|
|
66
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+
"TUBE" : "EDTA",
|
|
67
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+
"REPORT_NAME" : "Hemogram"
|
|
56
68
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},
|
|
57
69
|
"BASO%": {
|
|
58
70
|
"LIS_CODE" : "BASOparam",
|
|
59
|
-
"TUBE" : "EDTA"
|
|
71
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+
"TUBE" : "EDTA",
|
|
72
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+
"REPORT_NAME" : "Hemogram"
|
|
60
73
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},
|
|
61
74
|
"NEUT#": {
|
|
62
75
|
"LIS_CODE" : "ANCparam",
|
|
63
|
-
"TUBE" : "EDTA"
|
|
76
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+
"TUBE" : "EDTA",
|
|
77
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+
"REPORT_NAME" : "Hemogram"
|
|
64
78
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},
|
|
65
79
|
"LYMPH#": {
|
|
66
80
|
"LIS_CODE" : "ALCparam",
|
|
67
|
-
"TUBE" : "EDTA"
|
|
81
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+
"TUBE" : "EDTA",
|
|
82
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+
"REPORT_NAME" : "Hemogram"
|
|
68
83
|
},
|
|
69
84
|
"MONO#": {
|
|
70
85
|
"LIS_CODE" : "AMCparam",
|
|
71
|
-
"TUBE" : "EDTA"
|
|
86
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+
"TUBE" : "EDTA",
|
|
87
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+
"REPORT_NAME" : "Hemogram"
|
|
72
88
|
},
|
|
73
89
|
"EO#": {
|
|
74
90
|
"LIS_CODE" : "AECparam",
|
|
75
|
-
"TUBE" : "EDTA"
|
|
91
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+
"TUBE" : "EDTA",
|
|
92
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+
"REPORT_NAME" : "Hemogram"
|
|
76
93
|
},
|
|
77
94
|
"BASO#": {
|
|
78
95
|
"LIS_CODE" : "ABCparam",
|
|
79
|
-
"TUBE" : "EDTA"
|
|
96
|
+
"TUBE" : "EDTA",
|
|
97
|
+
"REPORT_NAME" : "Hemogram"
|
|
80
98
|
},
|
|
81
99
|
"RDW-CV": {
|
|
82
100
|
"LIS_CODE" : "RDWCVparam",
|
|
83
|
-
"TUBE" : "EDTA"
|
|
101
|
+
"TUBE" : "EDTA",
|
|
102
|
+
"REPORT_NAME" : "Hemogram"
|
|
84
103
|
},
|
|
85
104
|
"GLUR" : {
|
|
86
105
|
"LIS_CODE" : "GLUR",
|
|
87
|
-
"TUBE" : "FLUORIDE"
|
|
106
|
+
"TUBE" : "FLUORIDE",
|
|
107
|
+
"REPORT_NAME" : "Random Glucose"
|
|
88
108
|
},
|
|
89
109
|
"GLUPP" : {
|
|
90
110
|
"LIS_CODE" : "GLUPP",
|
|
91
|
-
"TUBE" : "FLUORIDE"
|
|
111
|
+
"TUBE" : "FLUORIDE",
|
|
112
|
+
"REPORT_NAME" : "Post Prandial Glucose"
|
|
92
113
|
},
|
|
93
114
|
"GLUF" : {
|
|
94
115
|
"LIS_CODE" : "GLUF",
|
|
95
|
-
"TUBE" : "FLUORIDE"
|
|
116
|
+
"TUBE" : "FLUORIDE",
|
|
117
|
+
"REPORT_NAME" : "Fasting Glucose"
|
|
96
118
|
},
|
|
97
119
|
"CHOL" : {
|
|
98
120
|
"LIS_CODE" : "CHOL",
|
|
99
|
-
"TUBE" : "SERUM"
|
|
121
|
+
"TUBE" : "SERUM",
|
|
122
|
+
"REPORT_NAME" : "Cholesterol"
|
|
100
123
|
},
|
|
101
124
|
"TRIG" : {
|
|
102
125
|
"LIS_CODE" : "TRIG",
|
|
103
|
-
"TUBE" : "SERUM"
|
|
126
|
+
"TUBE" : "SERUM",
|
|
127
|
+
"REPORT_NAME" : "Triglycerides"
|
|
104
128
|
},
|
|
105
129
|
"HDLC" : {
|
|
106
130
|
"LIS_CODE" : "HDLC",
|
|
107
|
-
"TUBE" : "SERUM"
|
|
131
|
+
"TUBE" : "SERUM",
|
|
132
|
+
"REPORT_NAME" : "HDLC"
|
|
108
133
|
},
|
|
109
134
|
"LDL" : {
|
|
110
135
|
"LIS_CODE" : "LDL",
|
|
111
|
-
"TUBE" : "SERUM"
|
|
136
|
+
"TUBE" : "SERUM",
|
|
137
|
+
"REPORT_NAME" : "LDL"
|
|
112
138
|
},
|
|
113
139
|
"VLDL" : {
|
|
114
140
|
"LIS_CODE" : "VLDL",
|
|
115
|
-
"TUBE" : "SERUM"
|
|
141
|
+
"TUBE" : "SERUM",
|
|
142
|
+
"REPORT_NAME" : "VLDL"
|
|
116
143
|
},
|
|
117
144
|
"CRE" : {
|
|
118
145
|
"LIS_CODE" : "CRE",
|
|
119
|
-
"TUBE" : "SERUM"
|
|
146
|
+
"TUBE" : "SERUM",
|
|
147
|
+
"REPORT_NAME" : "Creatinine"
|
|
120
148
|
},
|
|
121
149
|
"UREA" : {
|
|
122
150
|
"LIS_CODE" : "UREA",
|
|
123
|
-
"TUBE" : "SERUM"
|
|
151
|
+
"TUBE" : "SERUM",
|
|
152
|
+
"REPORT_NAME" : "Urea"
|
|
124
153
|
},
|
|
125
154
|
"BUN" : {
|
|
126
155
|
"LIS_CODE" : "BUN",
|
|
127
|
-
"TUBE" : "SERUM"
|
|
156
|
+
"TUBE" : "SERUM",
|
|
157
|
+
"REPORT_NAME" : "Blood Urea Nitrogen"
|
|
128
158
|
},
|
|
129
159
|
"ALB" : {
|
|
130
160
|
"LIS_CODE" : "ALB",
|
|
131
|
-
"TUBE" : "SERUM"
|
|
161
|
+
"TUBE" : "SERUM",
|
|
162
|
+
"REPORT_NAME" : "Albumin"
|
|
132
163
|
},
|
|
133
164
|
"GGT" : {
|
|
134
165
|
"LIS_CODE" : "GGT",
|
|
135
|
-
"TUBE" : "SERUM"
|
|
166
|
+
"TUBE" : "SERUM",
|
|
167
|
+
"REPORT_NAME" : "GGT"
|
|
136
168
|
},
|
|
137
169
|
"BID" : {
|
|
138
170
|
"LIS_CODE" : "BID",
|
|
139
|
-
"TUBE" : "SERUM"
|
|
171
|
+
"TUBE" : "SERUM",
|
|
172
|
+
"REPORT_NAME" : "Direct Bilirubin"
|
|
140
173
|
},
|
|
141
174
|
"BIT" : {
|
|
142
175
|
"LIS_CODE" : "BIT",
|
|
143
|
-
"TUBE" : "SERUM"
|
|
176
|
+
"TUBE" : "SERUM",
|
|
177
|
+
"REPORT_NAME" : "Total Bilirubin"
|
|
144
178
|
},
|
|
145
179
|
"ALPU" : {
|
|
146
180
|
"LIS_CODE" : "ALPU",
|
|
147
|
-
"TUBE" : "SERUM"
|
|
181
|
+
"TUBE" : "SERUM",
|
|
182
|
+
"REPORT_NAME" : "Alkaline Phosphatase"
|
|
148
183
|
},
|
|
149
184
|
"GOTHL" : {
|
|
150
185
|
"LIS_CODE" : "GOTHL",
|
|
151
|
-
"TUBE" : "SERUM"
|
|
186
|
+
"TUBE" : "SERUM",
|
|
187
|
+
"REPORT_NAME" : "SGOT"
|
|
152
188
|
},
|
|
153
189
|
"GPTHL" : {
|
|
154
190
|
"LIS_CODE" : "GPTHL",
|
|
155
|
-
"TUBE" : "SERUM"
|
|
191
|
+
"TUBE" : "SERUM",
|
|
192
|
+
"REPORT_NAME" : "SGPT"
|
|
156
193
|
},
|
|
157
194
|
"HOMOCY" : {
|
|
158
195
|
"LIS_CODE" : "HOMOCY",
|
|
159
|
-
"TUBE" : "SERUM"
|
|
196
|
+
"TUBE" : "SERUM",
|
|
197
|
+
"REPORT_NAME" : "Homocysteine"
|
|
160
198
|
},
|
|
161
199
|
"8" : {
|
|
162
200
|
"LIS_CODE" : "TSH",
|
|
163
|
-
"TUBE" : "SERUM"
|
|
201
|
+
"TUBE" : "SERUM",
|
|
202
|
+
"REPORT_NAME" : "TSH"
|
|
164
203
|
},
|
|
165
204
|
"7" : {
|
|
166
205
|
"LIS_CODE" : "T4",
|
|
167
|
-
"TUBE" : "SERUM"
|
|
206
|
+
"TUBE" : "SERUM",
|
|
207
|
+
"REPORT_NAME" : "T4"
|
|
168
208
|
},
|
|
169
209
|
"6" : {
|
|
170
210
|
"LIS_CODE" : "T3",
|
|
171
|
-
"TUBE" : "SERUM"
|
|
211
|
+
"TUBE" : "SERUM",
|
|
212
|
+
"REPORT_NAME" : "T3"
|
|
172
213
|
},
|
|
173
214
|
"5" : {
|
|
174
215
|
"LIS_CODE" : "HIV",
|
|
175
|
-
"TUBE" : "PLASMA"
|
|
216
|
+
"TUBE" : "PLASMA",
|
|
217
|
+
"REPORT_NAME" : "HIV Screening"
|
|
176
218
|
},
|
|
177
219
|
"4" : {
|
|
178
220
|
"LIS_CODE" : "HBS",
|
|
179
|
-
"TUBE" : "PLASMA"
|
|
221
|
+
"TUBE" : "PLASMA",
|
|
222
|
+
"REPORT_NAME" : "HBV Screening"
|
|
180
223
|
},
|
|
181
224
|
"3" : {
|
|
182
225
|
"LIS_CODE" : "VITD",
|
|
183
|
-
"TUBE" : "SERUM"
|
|
226
|
+
"TUBE" : "SERUM",
|
|
227
|
+
"REPORT_NAME" : "Vitamin D"
|
|
184
228
|
},
|
|
185
229
|
"2" : {
|
|
186
230
|
"LIS_CODE" : "HCV",
|
|
187
|
-
"TUBE" : "PLASMA"
|
|
231
|
+
"TUBE" : "PLASMA",
|
|
232
|
+
"REPORT_NAME" : "HCV Screening"
|
|
188
233
|
},
|
|
189
234
|
"1" : {
|
|
190
235
|
"LIS_CODE" : "B12",
|
|
191
|
-
"TUBE" : "SERUM"
|
|
236
|
+
"TUBE" : "SERUM",
|
|
237
|
+
"REPORT_NAME" : "Vitamin B12"
|
|
192
238
|
},
|
|
193
239
|
"ESR" : {
|
|
194
240
|
"LIS_CODE" : "ESR",
|
|
195
|
-
"TUBE" : "ESR"
|
|
241
|
+
"TUBE" : "ESR",
|
|
242
|
+
"REPORT_NAME" : "ESR"
|
|
196
243
|
},
|
|
197
244
|
"GLU" : {
|
|
198
245
|
"LIS_CODE" : "GLU",
|
|
199
|
-
"TUBE" : "URINE_CONTAINER"
|
|
246
|
+
"TUBE" : "URINE_CONTAINER",
|
|
247
|
+
"REPORT_NAME" : "Urine Routine"
|
|
200
248
|
},
|
|
201
249
|
"BIL" : {
|
|
202
250
|
"LIS_CODE" : "BIL",
|
|
203
|
-
"TUBE" : "URINE_CONTAINER"
|
|
251
|
+
"TUBE" : "URINE_CONTAINER",
|
|
252
|
+
"REPORT_NAME" : "Urine Routine"
|
|
204
253
|
},
|
|
205
254
|
"KET" : {
|
|
206
255
|
"LIS_CODE" : "KET",
|
|
207
|
-
"TUBE" : "URINE_CONTAINER"
|
|
256
|
+
"TUBE" : "URINE_CONTAINER",
|
|
257
|
+
"REPORT_NAME" : "Urine Routine"
|
|
208
258
|
},
|
|
209
259
|
"SG" : {
|
|
210
260
|
"LIS_CODE" : "SG",
|
|
211
|
-
"TUBE" : "URINE_CONTAINER"
|
|
261
|
+
"TUBE" : "URINE_CONTAINER",
|
|
262
|
+
"REPORT_NAME" : "Urine Routine"
|
|
212
263
|
},
|
|
213
264
|
"BLO" : {
|
|
214
265
|
"LIS_CODE" : "BLO",
|
|
215
|
-
"TUBE" : "URINE_CONTAINER"
|
|
266
|
+
"TUBE" : "URINE_CONTAINER",
|
|
267
|
+
"REPORT_NAME" : "Urine Routine"
|
|
216
268
|
},
|
|
217
269
|
"pH" : {
|
|
218
270
|
"LIS_CODE" : "pH",
|
|
219
|
-
"TUBE" : "URINE_CONTAINER"
|
|
271
|
+
"TUBE" : "URINE_CONTAINER",
|
|
272
|
+
"REPORT_NAME" : "Urine Routine"
|
|
220
273
|
},
|
|
221
274
|
"PRO" : {
|
|
222
275
|
"LIS_CODE" : "PRO",
|
|
223
|
-
"TUBE" : "URINE_CONTAINER"
|
|
276
|
+
"TUBE" : "URINE_CONTAINER",
|
|
277
|
+
"REPORT_NAME" : "Urine Routine"
|
|
224
278
|
},
|
|
225
279
|
"URO" : {
|
|
226
280
|
"LIS_CODE" : "URO",
|
|
227
|
-
"TUBE" : "URINE_CONTAINER"
|
|
281
|
+
"TUBE" : "URINE_CONTAINER",
|
|
282
|
+
"REPORT_NAME" : "Urine Routine"
|
|
228
283
|
},
|
|
229
284
|
"NIT" : {
|
|
230
285
|
"LIS_CODE" : "NIT",
|
|
231
|
-
"TUBE" : "URINE_CONTAINER"
|
|
286
|
+
"TUBE" : "URINE_CONTAINER",
|
|
287
|
+
"REPORT_NAME" : "Urine Routine"
|
|
232
288
|
},
|
|
233
289
|
"LEU" : {
|
|
234
290
|
"LIS_CODE" : "LEU",
|
|
235
|
-
"TUBE" : "URINE_CONTAINER"
|
|
291
|
+
"TUBE" : "URINE_CONTAINER",
|
|
292
|
+
"REPORT_NAME" : "Urine Routine"
|
|
236
293
|
},
|
|
237
294
|
"COL" : {
|
|
238
295
|
"LIS_CODE" : "COL",
|
|
239
|
-
"TUBE" : "URINE_CONTAINER"
|
|
296
|
+
"TUBE" : "URINE_CONTAINER",
|
|
297
|
+
"REPORT_NAME" : "Urine Routine"
|
|
240
298
|
},
|
|
241
299
|
"CLA" : {
|
|
242
300
|
"LIS_CODE" : "CLA",
|
|
243
|
-
"TUBE" : "URINE_CONTAINER"
|
|
301
|
+
"TUBE" : "URINE_CONTAINER",
|
|
302
|
+
"REPORT_NAME" : "Urine Routine"
|
|
244
303
|
}
|
|
245
304
|
}
|
data/lib/ruby_astm/result.rb
CHANGED
|
@@ -1,5 +1,6 @@
|
|
|
1
1
|
class Result
|
|
2
2
|
attr_accessor :name
|
|
3
|
+
attr_accessor :report_name
|
|
3
4
|
attr_accessor :value
|
|
4
5
|
attr_accessor :units
|
|
5
6
|
attr_accessor :flags
|
|
@@ -11,6 +12,7 @@ class Result
|
|
|
11
12
|
if line = args[:line]
|
|
12
13
|
line.fields[2].scan(/\^+(?<name>[A-Za-z0-9\%\#\-\_\?\/]+)\^?(?<dilution>\d+)?/) { |name,dilution|
|
|
13
14
|
self.name = lookup_mapping(name)
|
|
15
|
+
self.report_name = lookup_report_name(name)
|
|
14
16
|
}
|
|
15
17
|
end
|
|
16
18
|
end
|
|
@@ -60,6 +62,8 @@ class Result
|
|
|
60
62
|
end
|
|
61
63
|
end
|
|
62
64
|
|
|
65
|
+
|
|
66
|
+
|
|
63
67
|
## here will call mappings and check the result correlation
|
|
64
68
|
def initialize(args)
|
|
65
69
|
set_name(args)
|
|
@@ -68,6 +72,7 @@ class Result
|
|
|
68
72
|
set_timestamp(args)
|
|
69
73
|
set_dilution(args)
|
|
70
74
|
set_units(args)
|
|
75
|
+
|
|
71
76
|
=begin
|
|
72
77
|
if args[:line]
|
|
73
78
|
line = args[:line]
|
|
@@ -101,4 +106,8 @@ class Result
|
|
|
101
106
|
$mappings[name] ? $mappings[name]["TRANSFORM"] : nil
|
|
102
107
|
end
|
|
103
108
|
|
|
109
|
+
def lookup_report_name(name)
|
|
110
|
+
$mappings[name] ? $mappings[name]["REPORT_NAME"] : name
|
|
111
|
+
end
|
|
112
|
+
|
|
104
113
|
end
|