ruby-minigraph 0.0.20.0

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Files changed (89) hide show
  1. checksums.yaml +7 -0
  2. data/LICENSE.txt +21 -0
  3. data/README.md +62 -0
  4. data/ext/Rakefile +56 -0
  5. data/ext/cmappy/cmappy.c +7 -0
  6. data/ext/cmappy/cmappy.h +8 -0
  7. data/ext/minigraph/LICENSE.txt +23 -0
  8. data/ext/minigraph/Makefile +66 -0
  9. data/ext/minigraph/NEWS.md +317 -0
  10. data/ext/minigraph/README.md +207 -0
  11. data/ext/minigraph/algo.c +194 -0
  12. data/ext/minigraph/algo.h +33 -0
  13. data/ext/minigraph/asm-call.c +147 -0
  14. data/ext/minigraph/bseq.c +133 -0
  15. data/ext/minigraph/bseq.h +76 -0
  16. data/ext/minigraph/cal_cov.c +139 -0
  17. data/ext/minigraph/doc/example1.png +0 -0
  18. data/ext/minigraph/doc/example2.png +0 -0
  19. data/ext/minigraph/doc/examples.graffle +0 -0
  20. data/ext/minigraph/format.c +241 -0
  21. data/ext/minigraph/galign.c +140 -0
  22. data/ext/minigraph/gchain1.c +532 -0
  23. data/ext/minigraph/gcmisc.c +223 -0
  24. data/ext/minigraph/gfa-aug.c +260 -0
  25. data/ext/minigraph/gfa-base.c +526 -0
  26. data/ext/minigraph/gfa-bbl.c +372 -0
  27. data/ext/minigraph/gfa-ed.c +617 -0
  28. data/ext/minigraph/gfa-io.c +395 -0
  29. data/ext/minigraph/gfa-priv.h +154 -0
  30. data/ext/minigraph/gfa.h +166 -0
  31. data/ext/minigraph/ggen.c +182 -0
  32. data/ext/minigraph/ggen.h +21 -0
  33. data/ext/minigraph/ggsimple.c +570 -0
  34. data/ext/minigraph/gmap.c +211 -0
  35. data/ext/minigraph/index.c +230 -0
  36. data/ext/minigraph/kalloc.c +224 -0
  37. data/ext/minigraph/kalloc.h +82 -0
  38. data/ext/minigraph/kavl.h +414 -0
  39. data/ext/minigraph/kdq.h +134 -0
  40. data/ext/minigraph/ketopt.h +116 -0
  41. data/ext/minigraph/khashl.h +348 -0
  42. data/ext/minigraph/krmq.h +474 -0
  43. data/ext/minigraph/kseq.h +256 -0
  44. data/ext/minigraph/ksort.h +164 -0
  45. data/ext/minigraph/kstring.h +165 -0
  46. data/ext/minigraph/kthread.c +159 -0
  47. data/ext/minigraph/kthread.h +15 -0
  48. data/ext/minigraph/kvec-km.h +105 -0
  49. data/ext/minigraph/kvec.h +110 -0
  50. data/ext/minigraph/lchain.c +441 -0
  51. data/ext/minigraph/main.c +301 -0
  52. data/ext/minigraph/map-algo.c +500 -0
  53. data/ext/minigraph/mgpriv.h +128 -0
  54. data/ext/minigraph/minigraph.1 +359 -0
  55. data/ext/minigraph/minigraph.h +176 -0
  56. data/ext/minigraph/miniwfa.c +834 -0
  57. data/ext/minigraph/miniwfa.h +95 -0
  58. data/ext/minigraph/misc/mgutils.js +1451 -0
  59. data/ext/minigraph/misc.c +12 -0
  60. data/ext/minigraph/options.c +134 -0
  61. data/ext/minigraph/shortk.c +251 -0
  62. data/ext/minigraph/sketch.c +109 -0
  63. data/ext/minigraph/sys.c +147 -0
  64. data/ext/minigraph/sys.h +20 -0
  65. data/ext/minigraph/test/MT-chimp.fa +277 -0
  66. data/ext/minigraph/test/MT-human.fa +239 -0
  67. data/ext/minigraph/test/MT-orangA.fa +276 -0
  68. data/ext/minigraph/test/MT.gfa +19 -0
  69. data/ext/minigraph/tex/Makefile +13 -0
  70. data/ext/minigraph/tex/minigraph.bib +676 -0
  71. data/ext/minigraph/tex/minigraph.tex +986 -0
  72. data/ext/minigraph/tex/plots/CHM13-f1-90.bb.anno.gp +42 -0
  73. data/ext/minigraph/tex/plots/CHM13-f1-90.bb.anno.tbl +13 -0
  74. data/ext/minigraph/tex/plots/CHM13-f1-90.bb.mini-inter-none.win.gp +269 -0
  75. data/ext/minigraph/tex/plots/CHM13-f1-90.bb.mini-inter-none.win.sh +7 -0
  76. data/ext/minigraph/tex/plots/CHM13v1.cen.bed +23 -0
  77. data/ext/minigraph/tex/plots/CHM13v1.size +23 -0
  78. data/ext/minigraph/tex/plots/anno2tbl.js +40 -0
  79. data/ext/minigraph/tex/plots/bedutils.js +367 -0
  80. data/ext/minigraph/tex/plots/chr-plot.js +130 -0
  81. data/ext/minigraph/tex/plots/gen-anno.mak +24 -0
  82. data/ext/minigraph.patch +21 -0
  83. data/lib/minigraph/ffi/constants.rb +230 -0
  84. data/lib/minigraph/ffi/functions.rb +70 -0
  85. data/lib/minigraph/ffi/mappy.rb +8 -0
  86. data/lib/minigraph/ffi.rb +27 -0
  87. data/lib/minigraph/version.rb +5 -0
  88. data/lib/minigraph.rb +72 -0
  89. metadata +159 -0
data/ext/minigraph/test/MT-orangA.fa ADDED
@@ -0,0 +1,276 @@
1
+ >PA#NC_002083.1X
2
+ GATCACAGGCCTATCACCCTATTAATCACTCACGGGAGCTCTCCATGCATCTGGTATTTT
3
+ TTCGGGGGGGGATGCACGCGATAGCATCGCGGGCCGCTGGAACCGGAGCACCCTATGTCG
4
+ CAGGATCTGTCTTTGATTCCTACCTCATGCCATTATTAATCGCGCCTAATATCCAATATC
5
+ CTAGCCCCACCCTCAGTGTTTGAAGCTGCTATTTAATTTATGCTAGAGGACATAAAATTA
6
+ CCAAAAAAAAATAAACGAACTCTCAACAACCCTACCCCATCAACCCAACAAAATCCAATT
7
+ TTTATCTTTAGGCTATGTGCACTTTCAACAGGCACCCCTCAACTAACACAATCTCCTTCT
8
+ TATCCCACCCACCAACCCCCCCCCCCCCTTCCTCCCTCTTTCTCCATTTTCCCCACAAAC
9
+ ACCGCTACTACCCCCACACCCCAGACCAACCCAACCCAAAAGACACCCCGCACGGTTTAT
10
+ GTAGCTTATTCTATCCAAAGCAATGCACTGAAAATGTCTCGACGGGCCCACACGCCCCAT
11
+ AAACAAATAGGTTTGGTCCTAGCCTTTCTATTAGCTCTTAGTGAGGTTACACATGCAAGC
12
+ ATCCCCGCCCCAGTGAGTCGCCCTCCAAGTCACTCTGACTAAGAGGAGCAAGCATCAAGC
13
+ ACGCAACAGCGCAGCTCAAGACGCTCAGCCTAGCCACACCCCCACGGGAGACAGCAGTGA
14
+ TAAGTCTTTAGCAATAAACGAAAGTTCAACTAAGCTACACTAACCCCAGGGTTGGTCAAC
15
+ TTCGTGCCAGCCACCGCGGTCACACGATTAGCCCAAGTTAATAGAGATCGGCGTAGAGAG
16
+ TGTTTTAGATTCTTTTTCTCCCCAATAAAGCTAAAATTTACCTGAGTTGTAGAAAACTTA
17
+ AGCTAATACAAAATAAACTACGAAAGTGGCTTTAATATATCTGAACACACAATAGCTAAG
18
+ GCCCAAACTGGGATTAGATACCCCACTATGCTTAGCCCTAAACTTTAACAGTTAAATCAA
19
+ CAAAACTGCTCGCCAGAACACTACGAGCCACAGCTTAAAACTCAAAGGACCTGGCGGTGC
20
+ TTCATATCCCTCTAGAGGAGCCTGTTCTGTAATCGATAAACCCCGATCAACCTCACCACC
21
+ CCTTGCTCAGCCTATATACCGCCATCTTCAGCAAACCCTGATGAAGGCCACGAAGTAAGC
22
+ GCAAGCATCCACATAAAGACGTTAGGTCAAGGTGTAGCCCATGGAGTGGCAAGAAATGGG
23
+ CTACATTTTCTACTTCAGAAAACTACGATAGCCCTCATGAAACCTGAGGGTCGAAGGTGG
24
+ ATTTAGCAGTAAACTAAGAGTAGAGTGCTTAGTTGAACAGGGCCCTGAAGCGCGTACACA
25
+ CCGCCCGTCACCCTCTTCAAGTATATTTCAGGGACTACCTAACTAAAACCCCCACGCATC
26
+ TATATAGAGGAGGCAAGTCGTAACATGGTAAGCGTACTGGAAAGTGCGCTTGGACGAACC
27
+ AGAGGGTAGCTTAACACAAAGCACCCGGCTTACACCTGGGAGATTTCAATTCAACCTGGC
28
+ CCCTCTGAGCTAACCCTAGCCCCAAACCCAACCCACCCTACTACCAACCAACCCTAACCA
29
+ AACCATTCACCCAAACAAAGTATAGGCGATAGAAATTACAATCCGGCGCAATAGACACAG
30
+ TACCGTAAGGGAAAGATGAAAAAACACAACCAAGCACAACATAGCAAGGACTAACCCCTG
31
+ TACCTTTTGCATAATGAATTAACTAGAAACAACTTTGCAAGGAGAGCCAAAGCCAAGACC
32
+ CCCGAAACCAGACGAGCTACCCATAAACAGCTAAAAGAGCACACCCGTCTATGTAGCAAA
33
+ ATAGTGGGAAGATTTATGGGTAGAGGCGACAAACCTACCGAGCCTGGTGATAGCTGGTTG
34
+ TCCAAGACAGAATCTTAGTTCAACTTTAAATTTACTTACAGAACCCCTAATCCCCTCGTA
35
+ AATTTAATTGCTAGTCTAAAGAGGAACAGCTCTTTAGACACTAGGAAAAAACCTTAAAAA
36
+ GAGAGTAAAAAACACAACACCCATAGTGGGCCCAAAAGCAGCCATCAATTAAGAAAGCGT
37
+ TCAAGCTCGACACCTAAACACCAAAAAATACCAAACACAAAACTGAACTCCTTACTCCCC
38
+ ATTGGACTAATCTATTGCCCCATAGAAGAAACAATGTTAGTATAAGTAACATGAAGATAT
39
+ TCTCCCCCGCATAAGTCTACGTCAGACCGAAACATCACACTGACAATTAACGGTCCAATA
40
+ TGCATAGTTAACAAATAAACTATTATTTTTTCCCCCCGTTAATCCAACACAGGCATGCCT
41
+ ATAAGGAAAGGTTAAAAAAAGTAAAAGGAACTCGGCAAATCTCACCCCGCCTGTTTACCA
42
+ AAAACATCACCTCTAGCATTACCAGTATTAGAGGCACCGCCTGCCCGGTGACATACGTTT
43
+ AACGGCCGCGGTACCCTGACCGTGCAAAGGTAGCATAATCACTTGTTCCTTAAATGGGGA
44
+ CTTGTATGAATGGCTTCACGAGGGTTCGACTGTCTCTTACTTTTAACCAGTGAAATTGAC
45
+ CTGCCCGTGAAGAGGCGGGCATAACATAACAAGACGAGAAGACCCTATGGAGCTTCAATT
46
+ TACCAGTGCAAATAACATACAACAAGCCCACAGGCCCTAAATCACCAAACCTGCACTGAA
47
+ GATTTCGGTTGGGGCGACCTCGGAGCACAACCCAACCTCCGAGAAACACATGTTAAGACC
48
+ TCACAAGTCAAAACGAACTTCCACACACAATTGATCCAACAACTTGACCAACGGAACAAG
49
+ TTACCCTAGGGATAACAGCGCAATCCTGTTCTAGAGTCCATATCAACAACAGGGTTTACG
50
+ ACCTCGATGTTGGATCAGGACATCCTAATGGTGCAGCCGCTATTAAAGGTTCGTTTGTTC
51
+ AACGATTAAAGTCCTACGTGATCTGAGTTCAGACCGGAGCAATCCAGGTCGGTTTCTATC
52
+ TATTTCACATTTCTCCCTGTACGAAAGGACAAGAGAAATGGGGCCTACTTCACATAAGCG
53
+ CCTTTCCCAAACAAATGATATCATCTCAATTTAACACCACACCAACACCCACCCAAGAAA
54
+ AGGGCTATGTTAAGATGGCAGAGCCCGGTAACTGCATAAAATTTAAAGCTTTACAGTCAG
55
+ AGGTTCAACTCCTCTTCTTAACAATATGCCCATAATCAACCTCCTACTCCTCATTATATC
56
+ CATCCTAATCGCCATAGCATTTCTAATGCTAACCGAACGAAAAATCCTAGGCCACACACA
57
+ ACTACGCAAAGGGCCCAACATTGTGGGCCCCTACGGCTTACTACAACCCTTTGCCGACGC
58
+ CCTAAAACTATTCACCAAAGAACCCCTAAAACCCTCCACATCAACCATCACCCTTTACAT
59
+ TATTTCCCCCGCCCTAGCCCTTACCATTGCCCTCCTACTATGAACCCCCCTCCCTATGCC
60
+ CATCCCCCTAATCAACCTCAACTTAGGCCTCCTATTTATCCTAGCCGCGTCAAGCCTAAC
61
+ CGTCTACTCCATCCTCTGATCAGGATGAGCATCTAACTCAAACTACGCCCTAATCGGCGC
62
+ ATTGCGGGCGGTAGCCCAAACGATCTCATACGAAATTACCCTAGCCCTTATCCTGTTATC
63
+ AGTACTACTAATAAGCGGCTCTTTTAACCTCTCCGCCCTCATCACAACACAAGAACACTC
64
+ ATGACTACTTCTACCATCATGACCTCTAGCCCTAATATGATTTATTTCAACACTAGCAGA
65
+ AACCAACCGAGCCCCCTTCGACCTCACCGAAGGAGAATCCGAACTAGTTTCGGGCTTTAA
66
+ CACTGAATACGCCGCAGGTCCATTCGCCCTATTCTTCATAGCCGAATATACAAACATTAT
67
+ CTTAATAAACGCCCTCACCACTATAATTTTCCTAGGAACAACATTCAACATCCACTCCCC
68
+ AGAACTCTACACAACCCTCTTCACCATCAAAACCCTACTCCTAACCTCCCTATTCCTATG
69
+ AATTCGATCAACATACCCCCGATTCCGCTACGACCAACTCATGCACCTTCTATGAAAAAA
70
+ TTTCCTGCCACTCACCCTAGCACTACTAATATGACACATCTCCGTACCCATTGCAACCTC
71
+ CGGCATTCCCCCACAAACCTAAGAAATATGTCTGACAAAAGAGTTACTTTGATAGAGTAA
72
+ AAAATAGAGGTCTAAATCCCCTTATTTCTAGGATTATGGGAGTTGAACCCACCCCTGAGA
73
+ ATCCAAAATTCTCCGTGCCACCCATCACACCCTATCCTAAAGTAAGGTCAGCTAAATAAG
74
+ CTATCGGGCCCATACCCCGAAAATGTTGGTTATACCCTTCCCGTACTAATTAACCCCTTG
75
+ GCCCAACCCATCATTTACCCCACCATCTTCACAGGCACGCTCATTACAGCACTGAGCTCC
76
+ CACTGATTCTTTGCCTGACTGGGACTAGAAATAAATATACTCGCTTTCATCCCAGTCCTA
77
+ ACCAAAAAAACAAGCCCCCGCTCCACAGAAGCCGCCATTAAATATTTCCTCACACAGGCA
78
+ ACCGCATCCATAATCCTCCTGATAGCCATCCTCTACAACAACATACTTTCCGGACAGTGA
79
+ ACCACAACCAACACCACCAACCCATATTCATCTCTAATAATCGTAACCGCCCTAGCAATG
80
+ AAGCTAGGAATAGCCCCCTTCCACTTTTGAGTCCCAGAAGTCACCCAAGGAGTCCCCCTG
81
+ ACATCCGGCTTACTCCTCCTTACATGACAAAAATTAGCCCCCATTTCAATTATATACCAA
82
+ ATATCTTCATCGGTAGACACAAACATCCTCCTCACCCTCTCAATTCTATCTATCCTAGTA
83
+ GGCGGCTGAGGCGGACTAAACCAAACCCAACTACGCAAAATCCTGGCATACTCCTCAATC
84
+ ACCCATATAGGATGAATAATAGCAGTACTACCATATAACCCAGACATCACTATCCTCAAC
85
+ CTAATCATCTACATCATCCTGACAACTACCGCATTCCTAATCCTCGACTTAAACTCTAGT
86
+ GTCACAATCCTAATATTAACCCGCACCTGGAACAAGCTGACATGACTAATACCCTTAATC
87
+ CCATCAACCTTATTATCCCTAGGGGGCCTGCCACCACTAACCGGCTTCCTGCCCAAATGA
88
+ GCCATCATTGAAGAATTTGCAAAAAATGGCAATCTCATTACCCCCACAATCATGGCTATT
89
+ ATCACCCTCCTCAACCTCTACTTCTACGTACGCCTAATCTACGCCACCTCAATCACACTA
90
+ CTCCCCATATCTAACAACGCAAAAATGAAATGACAGTTCGAAAACACAAAACCCACCCCT
91
+ CTTCTCCCCACACTCACCATTCTTACCACCCTACTCCTACCTATCTCCCCTCTCATCCTA
92
+ TCTATCTCATAGAAATTTAGGTTAACACAGACCAAGAGCCTTCAAAGCCCTCAGCAAGTC
93
+ ACAGCACTTAATTTCTGTAACACTAAGGACTGCAAAGCCCCGCTCTGCATCAACTGAACG
94
+ CAAACCAGCCACTTTAATTAAGCTAAGCCCTCCCTAGACCGATGGGACTTAAACCCACAA
95
+ ACATTTAGTTAACAGCTAAACACCCTAATCAATTGGCTTCAGTCCACTTCTCCCGCCGCG
96
+ GGGAAAAAGGCGGGAGAAGCCCCGGCAGGCCTTAAAGCTGCTCCTTCGAATTTGCAATTC
97
+ AACATGACAATCACCTCGGGGCTGGTAAAAAGAGGTCTAACCCCTGTTCTTAGATTTACA
98
+ GCCTAATGCCTTAACTCGGCCATTTTACCCCCCCCCCCCCTTTTTTTCTCCACTAATGTT
99
+ CGCCGACCGCTGGCTATTCTCCACGAACCACAAAGACATCGGGACACTATACCTGTTATT
100
+ CGGCGCATGGGCTGGAGTCCTAGGCACTGCCCTAAGCCTCCTCATTCGAGCTGAACTGGG
101
+ CCAACCCGGCAACCTTCTAGGCAATGACCATATCTACAATGTCATCGTCACAGCTCATGC
102
+ ATTCGTAATAATTTTCTTTATAGTCATACCCATTATAATTGGAGGCTTTGGCAACTGACT
103
+ AGTGCCCCTAATAATCGGCGCCCCCGATATAGCATTCCCGCGCATAAATAATATAAGCTT
104
+ CTGACTCCTCCCCCCCTCCTTTCTCCTACTGCTCGCTTCTGCTACAGTAGAGGCTGGCGC
105
+ AGGAACAGGCTGAACAGTCTATCCGCCCCTAGCAGGAAACTACTCTCACCCAGGAGCCTC
106
+ TGTAGACTTAACAATCTTCTCTTTACACCTAGCAGGCATTTCCTCTATCCTAGGAGCTAT
107
+ CAATTTCATCACAACAATTATTAATATAAAACCCCCTGCAATATCCCAATACCAAACCCC
108
+ CCTCTTCGTCTGATCAGTCTTGATCACAGCAGTCCTACTTCTCCTTTCCCTCCCAGTCCT
109
+ AGCCGCTGGCATCACCATACTACTAACAGATCGCAACCTAAACACCACATTCTTTGACCC
110
+ AGCCGGAGGTGGAGATCCCATCCTATATCAGCACCTATTCTGATTTTTTGGCCACCCTGA
111
+ AGTCTACATTCTCATCCTGCCGGGTTTCGGCATAATCTCCCACATCGTAACACACTATTC
112
+ CGGAAAAGAAGAGCCATTTGGGTACATAGGCATAGTCTGAGCCATAGTCTCAATTGGCTT
113
+ CCTGGGCTTTATCGTATGGGCCCACCACATATTCACAGTAGGAATAGACGTGGACACACG
114
+ AGCCTACTTCACCTCCGCTACCATAATCATTGCCATCCCCACCGGCGTCAAAGTATTTAG
115
+ CTGACTCGCTACACTCCACGGAAGCAACACTAAATGATCTGCCGCAATCCTCTGAGCCTT
116
+ AGGATTCATTTTCCTCTTCACCGTAGGCGGCCTAACAGGCATCGTACTAGCAAACTCATC
117
+ ACTAGACATTGTATTACACGATACATACTACGTTGTAGCCCACTTTCATTACGTCCTATC
118
+ AATAGGAGCTGTATTCGCCATCATGGGAGGCTTCATCCACTGGTTCCCACTATTCTCAGG
119
+ CTACACCTTAGACCAGACCTATGCTAAAATTCACTTCATCACCATATTTATCGGCGTAAA
120
+ TTTAACTTTCTTCCCACAACATTTCCTCGGCCTGTCAGGCATACCCCGACGCTACTCCGA
121
+ CTACCCCGACGCGTACACCACCTGAAATATTTTATCATCCGCAGGCTCATTTATCTCCCT
122
+ AACAGCAGTCATACTAATAATTTTCATAATTTGAGAAGCCTTCGCCTCAAAACGAAAAGT
123
+ CCCAATAGTTGAACAACCCTCCACAAGCCTAGAGTGATTGTACGGATGCCCCCCACCCTA
124
+ CCACACATTTGAAGAACCCGTCTATATAAAACCAGAACAAAAAAGGAAGGAATCGAACCT
125
+ CCTAAAGCTGGTTTCAAGCCAACCCCACAACCTCCATGACTTTTTCAAGAGATACTAGAA
126
+ AAACCATTTCATGACTTTGTCAAAGTTAAGTTACAGGCCAAACCCTGTGTATCTTAATGG
127
+ CGCACGCAGCACAGGTAGGTTTACAAGACGCTACCTCTCCTATCATAGAAGAATTGGTCA
128
+ TCTTTCACGACCACGCCCTCATAATCATTTTCCTAATCTGCTTCCTAGTCCTGTACGCCC
129
+ TATTCCTAACACTCACAACAAAACTCACCAACACCAGCATCTCAGACGCCCAAGAGATAG
130
+ AGACTATTTGAACTATCCTACCGGCCATCATCCTAATTCTAATCGCCCTCCCATCCCTAC
131
+ GCATCCTCTACTTAACAGACGAGATCAACGACCCTTCCTTCACCATCAAATCAATCGGTC
132
+ ATCAATGATACTGAACCTACGAGTACACTGACTACGGTGGATTGATCTTCAACTCTTACA
133
+ TGCTCCCACCACTATTCCTAGAACCAGGCGACCTTCGACTCCTCGACGTCGACAACCGAG
134
+ TAGTCCTCCCAGTCGAAGCTCCCGTTCGCATAATAATCACATCCCAAGACGTCTTACACT
135
+ CATGAACTGTACCCTCACTAGGCCTGAAAACGGACGCAATCCCCGGACGCCTAAACCAAA
136
+ CCACATTCACTGCCACGCGACCAGGAGTGTACTATGGCCAATGCTCAGAAATCTGTGGAG
137
+ CTAACCACAGCTTTATGCCTATCGTCCTAGAACTAATCCCCCTAAAAATCTTCGAAATAG
138
+ GGCCCGTATTCACTTTATAACTTCCCCCACCCCCACAACCCATCCTACCCCCTTTCCTGA
139
+ GGCCCACTGCAAAGCTAATCTAGCATTAACCTTTTAAGTTAAAGACTAAGAGAATCAACC
140
+ CCTCTTTGCAGTGAAATGCCCCAACTAAATACCACCACATGGCCCACCATCATCACCCCA
141
+ ATACTCCTTGCACTATTCCTCATCACTCAACTAAAACTACTAAACTCACACCTCCACCCA
142
+ CCCACCCCACCAAAATTCACTAAACCAAAACTCCACGCCAAACCCTGAGGACCAAAATGA
143
+ ACGAAAGTCTATTTACCCCATTCATTACCCCCACAGTACTAGGCCTCCCCGCCGCAGTAC
144
+ TAGTCATCTTATTTCCCCCCTTACTGATCCCCACCTCCAAACATCTCATCAACAACCGAC
145
+ TAATTATTATCCAACAATGACTAATCCGACTCATCCTAAAACAAATAATAACCACCCATA
146
+ ACGCTAAAGGACGAACTTGATCCCTCATACTAACGTCCCTAATCATTTTCATCGCCTCAA
147
+ CCAACCTCCTAGGACTCCTCCCCTACTCATTTACACCAACCACCCAACTATCCATAAATT
148
+ TAGCTATAGCAATTCCCTTATGAGCAAGCACGGTAGCTATGGGCCTTCGCTTCAAAGCCA
149
+ AAATTACCCTAACCCACCTCTTACCACAAGGTACCCCCACACCTCTCATCCCTATACTAA
150
+ TTATTATTGAAACCGTCAGCCTTTTCATTCAACCACTAGCCTTAGCCGTACGCCTAACTG
151
+ CTAACATCACTGCAGGCCACCTACTCATGCACCTAATCGGAAGCTCTGCACTAGCTATAC
152
+ TAGCCATCAACCTCCCCCTAACCCTCATCACCCTTACAATCTTAACCCTGCTAACAATCC
153
+ TGGAGACTGCCATCGCCCTAATTCAAGCCTACGTCTTCACACTTCTAGTAAGCCTCTACC
154
+ TGCACGACAACTCATAATGGCCCATCAATCACACGCCTACCACATAGTAAAACCTAGCCC
155
+ ATGACCCCTAACAGGAGCTCTCTCAGCCCTCCTAACAACATCTGGCCTAACCATGTGATT
156
+ CCACTTCCACTCCACAACCCTACTATTAACAGGCCTACTAACCAATGCACTAACCATATA
157
+ CCAATGGTGACGAGATGTAGTGCGAGAAAGCACATACCAAGGCCACCACACACTACCCGT
158
+ CCAAAAAGGCCTCCGATATGGAATAATCCTATTCATCACTTCAGAAGTCTTTTTCTTCGC
159
+ CGGATTCTTCTGAGCATTCTACCACTCCAGCCTAGCCCCCACCCCTCAACTTGGAGGACA
160
+ CTGACCCCCAACAGGCATTATCCCCCTCAACCCCCTAGAAGTCCCACTCCTAAACACATC
161
+ CGTACTACTCGCATCAGGAGTCTCAATTACCTGAGCCCATCACAGCCTGATGGAAAATAA
162
+ TCGAACCCAAATAATTCAAGCACTACTCATCACAATCTTACTAGGCATCTACTTCACTCT
163
+ CCTTCAGGCTTCAGAATACATTGAAGCTCCTTTCACCATCTCTGACGGCATCTACGGCTC
164
+ AACATTCTTCATAGCCACGGGATTCCACGGCCTCCACGTCATTATCGGATCAACTTTCCT
165
+ CACTGTATGCCTAGCCCGCCAGCTATTATTCCACTTCACATCCAAACATCACTTTGGCTT
166
+ TGAGGCCGCCGCCTGATACTGGCACTTTGTAGACGTAGTCTGACTGTTTCTGTACGTCTC
167
+ CATCTACTGATGAGGTTCCTACTCTTTTAGTATAAACAGTACCGTTAACTTCCAATTAAC
168
+ TAGTTTTGACAACGCCCAAAAAAGAGTAATTAACTTCGTCCTAGCTCTAACAGTCAACAC
169
+ CCTCCTAGCCCTGCTACTAATAACCATCACATTCTGACTACCACAACTCTACCCCTACAT
170
+ AGAAAAATCCGACCCATACGAATGTGGATTTGACCCCGCATACCCCGCTCGCATTCCTTT
171
+ CTCCATAAAATTTTTCTTAGTAGCCATCACCTTCCTACTATTCGACCTAGAAATCGCCCT
172
+ GCTACTACCCCTGCCATGGGCCCTACAAACAACCAACTTACCACTAATAACTACATCATC
173
+ ACTTATATTAATTATCATCCTAGCCCTAGGCCTAACTTACGAATGATCACAAAAAGGATT
174
+ AGACTGAGCCGAATTGGTAAATAGTTTAAACAAAACAAATGATTTCGACTCATTAAATTA
175
+ TGACAGCCATATTTACCAAATGCCCCTTATCTACATAAATATCACACTAGCATTCACCAT
176
+ ATCACTCCTAGGCATACTAGTCTACCGCTCACACCTAATATCTTCTCTACTATGTCTAGA
177
+ AGGAATAATATTATCATTGTTCATTATAATTACTCTCATAACCCTCAACACCCACTCTCT
178
+ CCTAGCTAACATCATACCCATCACCATGCTAGTCTTCGCTGCCTGCGAAGCAGCAGTAGG
179
+ CCTCGCCCTACTAGCCTCAATCTCCAATACATACGGCCTAGACTACGTCAACAACCTAAA
180
+ CCTACTTCAATGCTAAAACTAATTATCCCAACAATCATACTGCTGCCCCTAACATGACTC
181
+ TCCAAAACGCACATAATCTGAATCAACACCACCACCCACAGCCTAATCATCAGCTCCATC
182
+ CCCCTACTATTCCTCAATCAAACCAACAGCAACCTGTACAGCTACTCCCTTCTTTTCTCC
183
+ TCCGACCCCTTATCAACCCCCCTTCTAATACTAACAACCTGACTCCTACCCCTCATAATT
184
+ ATAGCAAGCCAACACCATCTATCCAACGAACCCCCATCACGAAAAAAATTATACCTCACC
185
+ ATACTAATCTCTCTTCAAATCTCCCTAATCATAACATTCACAGCCACAGAGCTAATTATA
186
+ TTTTATATCCTCTTCGAAACCACTCTCATCCCCACCCTAGTCATTATCACCCGCTGAGGC
187
+ AACCAGCCAGAGCGCTTAAATGCAGGCACATACTTTCTATTCTACACACTAGTAGGCTCC
188
+ CTCCCCCTACTCATTGCCCTAATCCACACCTACAACACCCTAGGCTCGCTTAACATTGTA
189
+ TTACTAACTCTCACCGCCCGGGAGCTAACAGACTCCTGATCCAACAGCCTAATATGACTA
190
+ GCGTACACAATAGCTTTCATAGTAAAAATACCCCTCTACGGACTACACCTATGACTCCCT
191
+ AAAGCCCATGTAGAAGCCCCCATTGCCGGCTCAATAGTACTCGCCGCAGTGCTCTTAAAA
192
+ CTAGGTGGTTACGGTATAATACGCCTTATCCCCATTCTCAATCCCCTAACTAAACACATA
193
+ GCCTACCCCTTTATCATACTATCCCTATGAGGCATAATCATAACAAGCTCCATCTGCTTA
194
+ CGACAAACCGACCTAAAATCACTCATCGCATACTCCTCAGTCAGCCACATAGCGCTTGTT
195
+ GTAGCAGCTATCCTCATTCAAACCCCCTGAAGCTTCACCGGCGCAACCACCCTCATAATT
196
+ GCCCATGGACTCACATCCTCCCTACTGTTCTGCCTAGCAAACTCAAACTACGAACGAACC
197
+ CACAGCCGCATCATAATCCTCTCTCAAGGCCTTCAAACTCTACTCCCCCTAATAGCCCTC
198
+ TGATGACTTCTAGCAAGCCTCACTAACCTTGCCCTACCACCCACCATCAACCTACTAGGA
199
+ GAACTCTCCGTACTAATAGCCATATTCTCTTGATCTAACATCACCATCCTACTAACAGGA
200
+ CTCAACATACTAATCACAACCCTATACTCTCTCTATATATTCACCACAACACAACGAGGT
201
+ ACACCCACACATCACACCAACAACATAAAACCTTCTTTCACACGTGAAAACACCCTCATG
202
+ CTCATACACCTATCCCCCATTCTCCTCTTGTCCCTCAACCCCAGCATCATCGCTGGATTC
203
+ GCCTACTGTAAATATAGTTTAACCAAAACATCAGATTGTGAATCTAATAATAGGGCCCAC
204
+ AACCCCTTATTTACCGAGAAAGCTCACAAGAACTGCTAACTCTCACCCCATGTGTAACAA
205
+ CATGGCTTTCTCAACTTTTAAAGGATAACAGCTATCCCTTGGTCTTAGGACCCAAAAATT
206
+ TTGGTGCAACTCCAAATAAAAGTAACAGCCATGTTTACCACCATAACTGCCCTCACCTTG
207
+ ACTTCCCTAATCCCCCCCATTACCGCTACCCTCATTAACCCCAACAAAAAAAACTCATAC
208
+ CCCCACTATGTAAAAACTGCCATCGCATCCGCCTTTACTATCAGCCTTATCCCAACAACA
209
+ ATATTTATCTGCCTAGGACAAGAAACCATCGTCACAAACTGATGCTGAACAACCACCCAG
210
+ ACACTACAACTCTCACTAAGCTTCAAACTTGACTACTTCTCCATAACATTCCTCCCCGTA
211
+ GCACTACTCATCACTTGATCCATTATAGAATTTTCACTATGGTATATAGCCTCAGACCCA
212
+ AACATCAACCAATTTCTCAAATTCCTCCTTATTTTCCTAATCACCATAATTATCCTAGTC
213
+ ACTGCCAATAACCTACTCCAACTCTTCATCGGCTGAGAGGGCGTAGGGATCATATCCTTC
214
+ CTGCTCATTAGTTGATGATACGCCCGAACAGACGCCAACACGGCAGCTATTCAAGCAATC
215
+ CTATACAATCGTATCGGCGATATTGGCTTCATCCTGGCTCTAGCATGATTCCTCCTACAC
216
+ TCCAACTCATGGGAACTACAACAAGTATTCCTCCTAAACAATAACCCTAACCTCCTCCCA
217
+ CTACTAGGACTCCTCCTAGCCGCAGCTGGCAAATCAGCCCAACTAGGCCTTCACCCCTGA
218
+ CTACCCTCAGCCATAGAAGGCCCAACCCCCGTCTCAGCCCTACTTCACTCAAGCACCATG
219
+ GTCGTGGCTGGGGTCTTCCTACTCATCCGCTTTCACCCATTAACAGAAAACAGCCCACAT
220
+ ATCCAAACCCTTACACTATGCTTAGGGGCCATCACCACCCTGTTCGCAGCAATCTGCGCC
221
+ CTCACACAAAACGACATTAAGAAAATCGTAGCTTTCTCCACCTCAAGTCAACTAGGACTT
222
+ ATAATGGTCACAATTGGCATTAACCAGCCACACCTGGCACTCCTCCACATCTGCACCCAC
223
+ GCCTTCTTCAAAGCCCTTTTATTCATATGTTCTGGGTCCATCATCCACAACCTCAACAAT
224
+ GAGCAAGACATCCGAAAAATAGGAGGACTACTCAAAACCATACCCCTAACCTCAACCTCC
225
+ CTCACTATCAGCAGCCTAGCCCTCGCAGGAATACCCTTCCTCTCAGGCTTCTACTCCAAA
226
+ GACCTCATTATCGAGACCGCAAACATATCCTATACCAACACCTGAGCCCTGTCTATCACT
227
+ CTCATCGCCACCTCCTTAACAGGCGCCTACAGCACTCGAATAATCCTCCACACCCTTACA
228
+ AGCAAACCCCACTTCCCAACCCCAATCTCTATCAATGAAAACAACCCCACTCTACTTAAA
229
+ CCCATCAAGCGCCTTATGCTAGGAAGCCTATTCGCAGGATTCCTAATCACCAACAACATC
230
+ CCCCCTATATCCCTGCCCCAAGTAACAACCCCCCCTTACCTAAAACTCGCAGCTCTAGCT
231
+ GCCACCCTCCTAGGTCTCCTAGTAGCCCTAGACTTAAACTACCTAGCCAACAAACTCAAG
232
+ ACAAAAACCCCTCCACCCACATTCTATTTCTCCATCATACTCGGATTCTACCCTAGCATC
233
+ ATCCACCGCATAATCCCCCACCTAAGCCTTCTCATAAGCCAAAACTTATCCCTACTCCTA
234
+ CTAGACCTAACCTGACTAAAAAAACTAATACCCAAAACAATCTCACAACACCAAACCTCA
235
+ GCCTCCATCACTATTTCAACCCAAAAAGGTTTAATCAAACTCTACTTCCTCTCTTTCCTC
236
+ ATCCCACTCCTCCTAATCCTCCTTATAATCTCATAACCTATTACCCCGAGCAATCTCAAT
237
+ TACAACATAAACACCAACAAATAACGTTCAACCAGTAACCACCACCAACCAACGCCCATA
238
+ ATCATATAAAGCCCCCGCACCAATAGGATCCTCCCGAATCAACCCCGACCCTTCCCCTTC
239
+ ATAAATTATCCAGCTCCCCACGCTATTAAAATTCACCACTACCACCACTCCATCATACTC
240
+ TTTTACCCACAACACCAGCCCCACTTCCATCACTAATCCCACCAGAACACTCACCAATAC
241
+ CTCAACCCCTGACCCCCATGCCTCAGGATATTCCTCAATAGCTATTGCCGTAGTATACCC
242
+ AAAAACAACCATCATACCCCCTAAATAAATTAAAAAAACCATTAAACCCATATAACCTCC
243
+ CCCACAATTTAAAATAACTGCACACCCAACCGCACCACTAATAATCAACACTAAACCCCC
244
+ ATAAATAGGAGAGGGCTTAGAAGAAAACCCCACGAACCCTATCACTAAAATTACACTCAA
245
+ CAGAAACAAAGCATATGTCATTGTTCTCGCATAGACTGTGACTATGACCAATGGTATGAA
246
+ AAAACATCGTTGTACCTCAACTACAAGAACACTAATGACCTCAACACGTAAAACCAACCC
247
+ ACTAATAAAATTAATCAACCACTCACTTATCGACCTCCCCACCCCATCAAACATCTCCGC
248
+ ATGATGGAACTTCGGCTCACTCCTAGGCGCCTGCTTAATCATCCAAATCACCACTGGACT
249
+ ATTCCTAGCTATACATTATTCACCAGACGCCTCCACTGCCTTTTCATCAATCGCCCACAT
250
+ CACTCGAGATGTAAACTACGGCTGAATAATTCGCCACCTCCACGCTAACGGCGCCTCAAT
251
+ ATTCTTTATCTGCCTCTTCTTACATATCGGCCGAGGCCTATACTATGGCTCATTCACCCA
252
+ CCTAGAAACCTGAAACATCGGCATCATCCTACTATTTACAACTATAATAACAGCCTTCAT
253
+ AGGTTACGTCCTCCCATGAGGCCAAATATCCTTCTGAGGAGCCACAGTAATCACAAATCT
254
+ ACTGTCCGCCATCCCATACATTGGAACAGACCTGGTCCAATGAGTCTGAGGTGGCTACTC
255
+ AGTAAATAGCCCCACTCTAACACGATTCTTCACCCTACACTTCATACTACCCTTCATTAT
256
+ TACAGCCCTAACAACTCTACACCTCTTATTCCTACACGAAACAGGATCAAATAACCCCCT
257
+ GGGAATCCCCTCCCATTCCGACAAAATCACCTTCCACCCCTACTACACAATCAAAGACAT
258
+ CCTAGGCCTACTCCTTTTTCTCCTCGCCCTAATAACACTAACACTACTCTCACCAGACCT
259
+ CCTAAGCGACCCAGACAACTACACCTTAGCTAACCCCCTAAGCACCCCACCCCACATTAA
260
+ ACCCGAATGATATTTCCTATTCGCCTACGCAATCCTACGATCCGTCCCCAACAAACTAGG
261
+ AGGTGTAATAGCCCTCATACTATCCATCCTAATCCTAACAACAATCCCTGCCCTTCACAT
262
+ GTCCAAGCAACAGAGCATAACATTTCGCCCATTGAGCCAATTCCTATATTGACTTTTAAT
263
+ CGCCGACCTTCTAATTCTCACCTGAATTGGAGGGCAACCAGTAAGCTACCCCTTCATCAC
264
+ CATTAGCCAAGTAGCATCCACATTGTACTTCACTACTATCCTTCTACTTATACCAGCCTC
265
+ TTCCCTGATCGAAAACCACATACTCAAATGAACCTGCCCCTGTAGTACAAATAAGTACAC
266
+ CAGCCTTGTAACCTGAAAATGAAGACCCTCTTCCATGGGCAAAAAAAATCAGAGAAAAAG
267
+ CACTTAACTTCACCGTCAGCCCCCAAAGCCAACATTCTAATTTTAAACTACTCTCTGTTC
268
+ TTTCATGGGGGACCAGATTTGGGTGCCACCCCAGTACTGACCCATTTCTAACGGCCTATG
269
+ TATTTCGTACATTCCTGCTAGCCAACATGAATATCACCCAACACAACAATCGCTTAACCA
270
+ ACTATAATGCATACAAAACTCCAACCACACTCGACCTCCACACCCCGCTTACAAGCAAGT
271
+ ACCCCCCCATGCCCCCCCACCCAAACACATACACCGATCTCTCCACATAACCCCTCAACC
272
+ CCCAGCATATCAACAGACCAAACAAACCTTAAAGTACATAGCACATACTATCCTAACCGC
273
+ ACATAGCACATCCCGTTAAAACCCTGCTCATCCCCACGGATGCCCCCCCTCAGTTAGTAA
274
+ TCCCTTACTCACCATCCTCCGTGAAATCAATATCCCGCACAAGAGTGCTACTCCCCTCGC
275
+ TCCGGGCCCATAAAACCTGGGGGTAGCTAAAGTGAGCTGTATCCGGCATCTGGTTCTTAC
276
+ TTCAGGGCCATAAAACCCAAGATCGCCCACACGTTCCCCTTAAATAAGACATCACGATG
data/ext/minigraph/test/MT.gfa ADDED
@@ -0,0 +1,19 @@
1
+ S MTh0 GATCACAGGTCTATCACCCTATTAACCACTCACGGGAGCTCTCCATGCATTTGGTATTTTCGTCTGGGGGGTATGCACGCGATAGCATTGCGAGACGCTGGAGCCGGAGCACCCTATGTCGCAGTATCTGTCTTTGATTCCTGCCTCATCCTATTATTTATCGCACCTACGTTCAATATTACAGGCGAACATACTTACTAAAGTGTGTTAATTAATTAATGCTTGTAGGACATAATAATAACAATTGAATGTCTGCACAGCCACTTTCCACACAGACATCATAACAAAAAATTTCCACCAAACCCCCCCTCCCCCGCTTCTGGCCACAGCACTTAAACACATCTCTGCCAAACCCCAAAAACAAAGAACCCTAACACCAGCCTAACCAGATTTCAAATTTTATCTTTTGGCGGTATGCACTTTTAACAGTCACCCCCCAACTAACACATTATTTTCCCCTCCCACTCCCATACTACTAATCTCATCAATACAACCCCCGCCCATCCTACCCAGCACACACACACCGCTGCTAACCCCATACCCCGAACCAACCAAACCCCAAAGACACCCCCCACAGTTTATGTAGCTTACCTCCTCAAAGCAATACACTGAAAATGTTTAGACGGGCTCACATCACCCCATAAACAAATAGGTTTGGTCCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGCAAGCATCCCCGTTCCAGTGAGTTCACCCTCTAAATCACCACGATCAAAAGGAACAAGCATCAAGCACGCAGCAATGCAGCTCAAAACGCTTAGCCTAGCCACACCCCCACGGGAAACAGCAGTGATTAACCTTTAGCAATAAACGAAAGTTTAACTAAGCTATACTAACCCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTCACACGATTAACCCAAGTCAATAGAAGCCGGCGTAAAGAGTGTTTTAGATCACCCCCTCCCCAATAAAGCTAAAACTCACCTGAGTTGTAAAAAACTCCAGTTGACACAAAATAGACTACGAAAGTGGCTTTAACATATCTGAACACACAATAGCTAAGACCCAAACTGGGATTAGATACCCCACTATGCTTAGCCCTAAACCTCAACAGTTAAATCAACAAAACTGCTCGCCAGAACACTACGAGCCACAGCTTAAAACTCAAAGGACCTGGCGGTGCTTCATATCCCTCTAGAGGAGCCTGTTCTGTAATCGATAAACCCCGATCAACCTCACCACCTCTTGCTCAGCCTATATACCGCCATCTTCAGCAAACCCTGATGAAGGCTACAAAGTAAGCGCAAGTACCCACGTAAAGACGTTAGGTCAAGGTGTAGCCCATGAGGTGGCAAGAAATGGGCTACATTTTCTACCCCAGAAAACTACGATAGCCCTTATGAAACTTAAGGGTCGAAGGTGGATTTAGCAGTAAACTAAGAGTAGAGTGCTTAGTTGAACAGGGCCCTGAAGCGCGTACACACCGCCCGTCACCCTCCTCAAGTATACTTCAAAGGACATTTAACTAAAACCCCTACGCATTTATATAGAGGAGACAAGTCGTAACATGGTAAGTGTACTGGAAAGTGCACTTGGACGAACCAGAGTGTAGCTTAACACAAAGCACCCAACTTACACTTAGGAGATTTCAACTTAACTTGACCGCTCTGAGCTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAATAAAGTATAGGCGATAGAAATTGAAACCTGGCGCAATAGATATAGTACCGCAAGGGAAAGATGAAAAATTATAACCAAGCATAATATAGCAAGGACTAACCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAGAGCCAAAGCTAAGACCCCCGAAACCAGACGAGCTACCTAAGAACAGCTAAAAGAGCACACCCGTCTATGTAGCAAAATAGTGGGAAGATTTATAGGTAGAGGCGACAAACCTACCGAGCCTGGTGATAGCTGGTTGTCCAAGATAGAATCTTAGTTCAACTTTAAATTTGCCCACAGAACCCTCTAAATCCCCTTGTAAATTTAACTGTTAGTCCAAAGAGGAACAGCTCTTTGGACACTAGGAAAAAACCTTGTAGAGAGAGTAAAAAATTTAACACCCATAGTAGGCCTAAAAGCAGCCACCAATTAAGAAAGCGTTCAAGCTCAACACCCACTACCTAAAAAATCCCAAACATATAACTGAACTCCTCACACCCAATTGGACCAATCTATCACCCTATAGAAGAACTAATGTTAGTATAAGTAACATGAAAACATTCTCCTCCGCATAAGCCTGCGTCAGATTAAAACACTGAACTGACAATTAACAGCCCAATATCTACAATCAACCAACAAGTCATTATTACCCTCACTGTCAACCCAACACAGGCATGCTCATAAGGAAAGGTTAAAAAAAGTAAAAGGAACTCGGCAAATCTTACCCCGCCTGTTTACCAAAAACATCACCTCTAGCATCACCAGTATTAGAGGCACCGCCTGCCCAGTGACACATGTTTAACGGCCGCGGTACCCTAACCGTGCAAAGGTAGCATAATCACTTGTTCCTTAAATAGGGACCTGTATGAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCCCGTGAAGAGGCGGGCATAACACAGCAAGACGAGAAGACCCTATGGAGCTTTAATTTATTAATGCAAACAGTACCTAACAAACCCACAGGTCCTAAACTACCAAACCTGCATTAAAAATTTCGGTTGGGGCGACCTCGGAGCAGAACCCAACCTCCGAGCAGTACATGCTAAGACTTCACCAGTCAAAGCGAACTACTATACTCAATTGATCCAATAACTTGACCAACGGAACAAGTTACCCTAGGGATAACAGCGCAATCCTATTCTAGAGTCCATATCAACAATAGGGTTTACGACCTCGATGTTGGATCAGGACATCCCGATGGTGCAGCCGCTATTAAAGGTTCGTTTGTTCAACGATTAAAGTCCTACGTGATCTGAGTTCAGACCGGAGTAATCCAGGTCGGTTTCTATCTACaTTCAAATTCCTCCCTGTACGAAAGGACAAGAGAAATAAGGCCTACTTCACAAAGCGCCTTCCCCCGTAAATGATATCATCTCAACTTAGTATTATACCCACACCCACCCAAGAACAGGGTTTGTTAAGATGGCAGAGCCCGGTAATCGCATAAAACTTAAAACTTTACAGTCAGAGGTTCAATTCCTCTTCTTAACAACATACCCATGGCCAACCTCCTACTCCTCATTGTACCCATTCTAATCGCAATGGCATTCCTAATGCTTACCGAACGAAAAATTCTAGGCTATATACAACTACGCAAAGGCCCCAACGTTGTAGGCCCCTACGGGCTACTACAACCCTTCGCTGACGCCATAAAACTCTTCACCAAAGAGCCCCTAAAACCCGCCACATCTACCATCACCCTCTACATCACCGCCCCGACCTTAGCTCTCACCATCGCTCTTCTACTATGAACCCCCCTCCCCATACCCAACCCCCTGGTCAACCTCAACCTAGGCCTCCTATTTATTCTAGCCACCTCTAGCCTAGCCGTTTACTCAATCCTCTGATCAGGGTGAGCATCAAACTCAAACTACGCCCTGATCGGCGCACTGCGAGCAGTAGCCCAAACAATCTCATATGAAGTCACCCTAGCCATCATTCTACTATCAACATTACTAATAAGTGGCTCCTTTAACCTCTCCACCCTTATCACAACACAAGAACACCTCTGATTACTCCTGCCATCATGACCCTTGGCCATAATATGATTTATCTCCACACTAGCAGAGACCAACCGAACCCCCTTCGACCTTGCCGAAGGGGAGTCCGAACTAGTCTCAGGCTTCAACATCGAATACGCCGCAGGCCCCTTCGCCCTATTCTTCATAGCCGAATACACAAACATTAT SN:Z:MT_human SO:i:0 SR:i:0
2
+ S MTh4001 TATAATAAACACCCTCACCACTACAATCTTCCTAGGAACAACATATGACGCACTCTCCCCTGAACTCTACACAACATATTTTGTCACCAAGACCCTACTTCTAACCTCCCTGTTCTTATGAATTCGAACAGCATACCCCCGATTCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTCACCCTAGCATTACTTATATGATATGTCTCCATACCCATTACAATCTCCAGCATTCCCCCTCAAACCTAAGAAATATGTCTGATAAAAGAGTTACTTTGATAGAGTAAATAATAGGAGCTTAAACCCCCTTATTTCTAGGACTATGAGAATCGAACCCATCCCTGAGAATCCAAAATTCTCCGTGCCACCTATCACACCCCATCCTAAAGTAAGGTCAGCTAAATAAGCTATCGGGCCCATACCCCGAAAATGTTGGTTATACCCTTCCCGTACTAATTAATCCCCTGGCCCAACCCGTCATCTACTCT SN:Z:MT_human SO:i:4001 SR:i:0
3
+ S MTo3426 GGGGTAAATGATGGGTTGGGCCAAGGGGTTAATTAGTACGGGAAGGGTATAACCAACATTTTCGGGGTATGGGCCCGATAGCTTATTTAGCTGACCTTACTTTAGGATAGGGTGTGATGGGTGGCACGGAGAATTTTGGATTCTCAGGGGTGGGTTCAACTCCCATAATCCTAGAAATAAGGGGATTTAGACCTCTATTTTTTACTCTATCAAAGTAACTCTTTTGTCAGACATATTTCTTAGGTTTGTGGGGGAATGCCGGAGGTTGCAATGGGTACGGAGATGTGTCATATTAGTAGTGCTAGGGTGAGTGGCAGGAAATTTTTTCATAGAAGGTGCATGAGTTGGTCGTAGCGGAATCGGGGGTATGTTGATCGAATTCATAGGAATAGGGAGGTTAGGAGTAGGGTTTTGATGGTGAAGAGGGTTGTGTAGAGTTCTGGGGAGTGGATGTTGAATGTTGTTCCTAGGAAAATTATAGTGGTGAGGGCGTTTATTAAG SN:Z:MT_orang SO:i:3426 SR:i:1
4
+ S MTh4502 ACCATCTTTGCAGGCACACTCATCACAGCGCTAAGCTCGCACTGATTTTTTACCTGAGTAGGCCTAGAAATAAACATGCTAGCTTTTATTCCAGTTCTAACCAAAAAAATAAACCCTCGTTCCACAGAAGCTGCCATCAAGTATTTCCTCACGCAAGCAACCGCATCCATAATCCTTCTAATAGCTATCCTCTTCAACAATATACTCTCCGGACAATGAACCATAACCAATACTACCAATCAATACTCATCATTAATAATCATAATAGCTATAGCAATAAAACTAGGAATAGCCCCCTTTCACTTCTGAGTCCCAGAGGTTACCCAAGGCACCCCTCTGACATCCGGCCTGCTTCTTCTCACATGACAAAAACTAGCCCCCATCTCAATCATATACCAAATCTCTCCCTCACTAAACGTAAGCCTTCTCCTCACTCTCTCAATCTTATCCATCATAGCAGGCAGTTGAGGTGGATTAAACCAAACCCAGCTACGCAAAATCTTAGCATACTCCTCAATTACCCACATAGGATGAATAATAGCAGTTCTACCGTACAACCCTAACATAACCATTCTTAATTTAACTATTTATATTATCCTAACTACTACCGCATTCCTACTACTCAACTTAAACTCCAGCACCACGACCCTACTACTATCTCGCACCTGAAACAAGCTAACATGACTAACACCCTTAATTCCATCCACCCTCCTCTCCCTAGGAGGCCTGCCCCCGCTAACCGGCTTTTTGCCCAAATGGGCCATTATCGAAGAATTCACAAAAAACAATAGCCTCATCATCCCCACCATCATAGCCACCATCACCCTCCTTAACCTCTACTTCTACCTACGCCTAATCTACTCCACCTCAATCACACTACTCCCCATATCTAACAACGTAAAAATAAAATGACAGTTTGAACATACAAAACCCACCCCATTCCTCCCCACACTCATCGCCCTTACCACGCTACTCCTACCTATCTCCCCTTTTATACTAATAATCTTATAGAAATTTAGGTTAAATACAGACCAAGAGCCTTCAAAGCCCTCAGTAAGTTGCAATACTTAATTTCTGTAACAGCTAAGGACTGCAAAACCCCACTCTGCATCAACTGAACGCAAATCAGCCACTTTAATTAAGCTAAGCCCTTACTAGACCAATGGGACTTAAACCCACAAACACTTAGTTAACAGCTAAGCACCCTAATCAACTGGCTTCAATCTACTTCTCCCGCCGCCGGGAAAAAAGGCGGGAGAAGCCCCGGCAGGTTTGAAGCTGCTTCTTCGAATTTGCAATTCAATATGAAAATCACCTCGGAGCTGGTAAAAAGAGGCCTAACCCCTGTCTTTAGATTTACAGTCCAATGCTTCACTCAGCCATTTTACCTCACCCCCACTGATGTTCGCCGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCGCATGAGCTGGAGTCCTAGGCACAGCTCTAAGCCTCCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACCACATCTACAACGTTATCGTCACAGCCCATGCATTTGTAATAATCTTCTTCATAGTAATACCCATCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCCCCGATATGGCGTTTCCCCGCATAAACAACATAAGCTTCTGACTCTTACCTCCCTCTCTCCTACTCCTGCTCGCATCTGCTATAGTGGAGGCCGGAGCAGGAACAGGTTGAACAGTCTACCCTCCCTTAGCAGGGAACTACTCCCACCCTGGAGCCTCCGTAGACCTAACCATCTTCTCCTTACACCTAGCAGGTGTCTCCTCTATCTTAGGGGCCATCAATTTCATCACAACAATTATCAATATAAAACCCCCTGCCATAACCCAATACCAAACGCCCCTCTTCGTCTGATCCGTCCTAATCACAGCAGTCCTACTTCTCCTATCTCTCCCAGTCCTAGCTGCTGGCATCACTATACTACTAACAGACCGCAACCTCAACACCACCTTCTTCGACCCCGCCGGAGGAGGAGACCCCATTCTATACCAACACCTATTCTGATTTTTCGGTCACCCTGAAGTTTATATTCTTATCCTACCAGGCTTCGGAATAATCTCCCATATTGTAACTTACTACTCCGGAAAAAAAGAACCATTTGGATACATAGGTATGGTCTGAGCTATGATATCAATTGGCTTCCTAGGGTTTATCGTGTGAGCACACCATATATTTACAGTAGGAATAGACGTAGACACACGAGCATATTTCACCTCCGCTACCATAATCATCGCTATCCCCACCGGCGTCAAAGTATTTAGCTGACTCGCCACACTCCACGGAAGCAATATGAAATGATCTGCTGCAGTGCTCTGAGCCCTAGGATTCATCTTTCTTTTCACCGTAGGTGGCCTGACTGGCATTGTATTAGCAAACTCATCACTAGACATCGTACTACACGACACGTACTACGTTGTAGCCCACTTCCACTATGTCCTATCAATAGGAGCTGTATTTGCCATCATAGGAGGCTTCATTCACTGATTTCCCCTATTCTCAGGCTACACCCTAGACCAAACCTACGCCAAAATCCATTTCACTATCATATTCATCGGCGTAAATCTAACTTTCTTCCCACAACACTTTCTCGGCCTATCCGGAATGCCCCGACGTTACTCGGACTACCCCGATGCATACACCACATGAAACATCCTATCATCTGTAGGCTCATTCATTTCTCTAACAGCAGTAATATTAATAATTTTCATGATTTGAGAAGCCTTCGCTTCGAAGCGAAAAGTCCTAATAGTAGAAGAACCCTCCATAAACCTGGAGTGACTATATGGATGCCCCCCACCCTACCACACATTCGAAGAACCCGTATACATAAAATCTAGACAAAAAAGGAAGGAATCGAACCCCCCAAAGCTGGTTTCAAGCCAACCCCATGGCCTCCATGACTTTTTCAAAAAGGTATTAGAAAAACCATTTCATAACTTTGTCAAAGTTAAATTATAGGCTAAATCCTATATATCTTAATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGATCACGCCCTCATAATCATTTTCCTTATCTGCTTCCTAGTCCTGTATGCCCTTTTCCTAACACTCACAACAAAACTAACTAATACTAACATCTCAGACGCTCAGGAAATAGAAACCGTCTGAACTATCCTGCCCGCCATCATCCTAGTCCTCATCGCCCTCCCATCCCTACGCATCCTTTACATAACAGACGAGGTCAACGATCCCTCCCTTACCATCAAATCAATTGGCCACCAATGGTACTGAACCTACGAGTACACCGACTACGGCGGACTAATCTTCAACTCCTACATACTTCCCCCATTATTCCTAGAACCAGGCGACCTGCGACTCCTTGACGTTGACAATCGAGTAGTACTCCCGATTGAAGCCCCCATTCGTATAATAATTACATCACAAGACGTCTTGCACTCATGAGCTGTCCCCACATTAGGCTTAAAAACAGATGCAATTCCCGGACGTCTAAACCAAACCACTTTCACCGCTACACGACCGGGGGTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATAGGGCCCGTATTTACCCTATAGCACCCCCTCTACCCCCTCTAGAGCCCACTGTAAAGCTAACTTAGCATTAACCTTTTAAGTTAAAGATTAAGAGAACCAACACCTCTTTACAGTGAAATGCCCCAACTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACTATTCCTCATCACCCAACTAAAAATATTAAACACAAACTACCACCTACCTCCCTCACCAAAGCCCATAAAAATAAAAAATTATAACAAACCCTGAGAACCAAAATGAACGAAAATCTGTTCGCTTCATTCATTGCCCCCACAATCCTAGGCCTACCCGCCGCAGTACTGATCATTCTATTTCCCCCTCTATTGATCCCCACCTCCAAATATCTCATCAACAACCGACTAATCACCACCCAACAATGACTAATCAAACTAACCTCAAAACAAATGATAACCATACACAACACTAAAGGACGAACCTGATCTCTTATACTAGTATCCTTAATCATTTTTATTGCCACAACTAACCTCCTCGGACTCCTGCCTCACTCATTTACACCAACCACCCAACTATCTATAAACCTAGCCATGGCCATCCCCTTATGAGCGGGCACAGTGATTATAGGCTTTCGCTCTAAGATTAAAAATGCCCTAGCCCACTTCTTACCACAAGGCACACCTACACCCCTTATCCCCATACTAGTTATTATCGAAACCATCAGCCTACTCATTCAACCAATAGCCCTGGCCGTACGCCTAACCGCTAACATTACTGCAGGCCACCTACTCATGCACCTAATTGGAAGCGCCACCCTAGCAATATCAACCATTAACCTTCCCTCTACACTTATCATCTTCACAATTCTAATTCTACTGACTATCCTAGAAATCGCTGTCGCCTTAATCCAAGCCTACGTTTTCACACTTCTAGTAAGCCTCTACCTGCACGACAACACATAATGACCCACCAATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAATGACCTCCGGCCTAGCCATGTGATTTCACTTCCACTCCATAACGCTCCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGATGGCGCGATGTAACACGAGAAAGCACATACCAAGGCCACCACACACCACCTGTCCAAAAAGGCCTTCGATACGGGATAATCCTATTTATTACCTCAGAAGTTTTTTTCTTCGCAGGATTTTTCTGAGC SN:Z:MT_human SO:i:4502 SR:i:0
5
+ S MTo8961 ATTCTACCACTCCAGCCTAGCCCCCACCCCTCAACTTGGAGGACACTGACCCCCAACAGGCATTATCCCCCTCAACCCCCTAGAAGTCCCACTCCTAAACACATCCGTACTACTCGCATCAGGAGTCTCAATTACCTGAGCCCATCACAGCCTGATGGAAAATAATCGAACCCAAATAATTCAAGCACTACTCATCACAATCTTACTAGGCATCTACTTCACTCTCCTTCAGGCTTCAGAATACATTGAAGCTCCTTTCACCATCTCTGACGGCATCTACGGCTCAACATTCTTCATAGCCACGGGATTCCACGGCCTCCACGTCATTATCGGATCAACTTTCCTCACTGTATGCCTAGCCCGCCAGCTATTATTCCACTTCACATCCAAACATCACTTTGGCTTTGAGGCCGCCGCCTGATACTGGCACTTTGTAGACGTAGTCTGACTGTTTCTGTACGTCTCCATCTACTGATGAGGTTCCTACTCTTTTAGTATAAAC SN:Z:MT_orang SO:i:8961 SR:i:1
6
+ S MTh9505 CTTTTACCACTCCAGCCTAGCCCCTACCCCCCAATTAGGAGGGCACTGGCCCCCAACAGGCATCACCCCGCTAAATCCCCTAGAAGTCCCACTCCTAAACACATCCGTATTACTCGCATCAGGAGTATCAATCACCTGAGCTCACCATAGTCTAATAGAAAACAACCGAAACCAAATAATTCAAGCACTGCTTATTACAATTTTACTGGGTCTCTATTTTACCCTCCTACAAGCCTCAGAGTACTTCGAGTCTCCCTTCACCATTTCCGACGGCATCTACGGCTCAACATTTTTTGTAGCCACAGGCTTCCACGGACTTCACGTCATTATTGGCTCAACTTTCCTCACTATCTGCTTCATCCGCCAACTAATATTTCACTTTACATCCAAACATCACTTTGGCTTCGAAGCCGCCGCCTGATACTGGCATTTTGTAGATGTGGTTTGACTATTTCTGTATGTCTCCATCTATTGATGAGGGTCTTACTCTTTTAGTATAAATAGTACCGTTAACTTCCAATTAACTAGTTTTGACAACATTCAAAAAAGAGTAATAAACTTCGCCTTAATTTTAATAATCAACACCCTCCTAGCCTTACTACTAATAATTATTACATTTTGACTACCACAACTCAACGGCTACATAGAAAAATCCACCCCTTACGAGTGCGGCTTCGACCCTATATCCCCCGCCCGCGTCCCTTTCTCCATAAAATTCTTCTTAGTAGCTATTACCTTCTTATTATTTGATCTAGAAATTGCCCTCCTTTTACCCCTACCATGAGCCCTACAAACAACTAACCTGCCACTAATAGTTATGTCATCCCTCTTATTAATCATCATCCTAGCCCTAAGTCTGGCCTATGAGTGACTACAAAAAGGATTAGACTGAACCGAATTGGTATATAGTTTAAACAAAACGAATGATTTCGACTCATTAAATTATGATAATCATATTTACCAAATGCCCCTCATTTACATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCTCATATCCTCCCTACTATGCCTAGAAGGAATAATACTATCGCTGTTCATTATAGCTACTCTCATAACCCTCAACACCCACTCCCTCTTAGCCAATATTGTGCCTATTGCCATACTAGTCTTTGCCGCCTGCGAAGCAGCGGTGGGCCTAGCCCTACTAGTCTCAATCTCCAACACATATGGCCTAGACTACGTACATAACCTAAACCTACTCCAATGCTAAAACTAATCGTCCCAACAATTATATTACTACCACTGACATGACTTTCCAAAAAACACATAATTTGAATCAACACAACCACCCACAGCCTAATTATTAGCATCATCCCTCTACTATTTTTTAACCAAATCAACAACAACCTATTTAGCTGTTCCCCAACCTTTTCCTCCGACCCCCTAACAACCCCCCTCCTAATACTAACTACCTGACTCCTACCCCTCACAATCATGGCAAGCCAACGCCACTTATCCAGTGAACCACTATCACGAAAAAAACTCTACCTCTCTATACTAATCTCCCTACAAATCTCCTTAATTATAACATTCACAGCCACAGAACTAATCATATTTTATATCTTCTTCGAAACCACACTTATCCCCACCTTGGCTATCATCACCCGATGAGGCAACCAGCCAGAACGCCTGAACGCAGGCACATACTTCCTATTCTACACCCTAGTAGGCTCCCTTCCCCTACTCATCGCACTAATTTACACTCACAACACCCTAGGCTCACTAAACATTCTACTACTCACTCTCACTGCCCAAGAACTATCAAACTCCTGAGCCAACAACTTAATATGACTAGCTTACACAATAGCTTTTATAGTAAAGATACCTCTTTACGGACTCCACTTATGACTCCCTAAAGCCCATGTCGAAGCCCCCATCGCTGGGTCAATAGTACTTGCCGCAGTACTCTTAAAACTAGGCGGCTATGGTATAATACGCCTCACACTCATTCTCAACCCCCTGACAAAACACATAGCCTACCCCTTCCTTGTACTATCCCTATGAGGCATAATTATAACAAGCTCCATCTGCCTACGACAAACAGACCTAAAATCGCTCATTGCATACTCTTCAATCAGCCACATAGCCCTCGTAGTAACAGCCATTCTCATCCAAACCCCCTGAAGCTTCACCGGCGCAGTCATTCTCATAATCGCCCACGGGCTTACATCCTCATTACTATTCTGCCTAGCAAACTCAAACTACGAACGCACTCACAGTCGCATCATAATCCTCTCTCAAGGACTTCAAACTCTACTCCCACTAATAGCTTTTTGATGACTTCTAGCAAGCCTCGCTAACCTCGCCTTACCCCCCACTATTAACCTACTGGGAGAACTCTCTGTGCTAGTAACCACGTTCTCCTGATCAAATATCACTCTCCTACTTACAGGACTCAACATACTAGTCACAGCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCACCCACCACATTAACAACATAAAACCCTCATTCACACGAGAAAACACCCTCATGTTCATACACCTATCCCCCATTCTCCTCCTATCCCTCAACCCCGACATCATTACCGGGTTTTCCTCTTGTAAATATAGTTTAACCAAAACATCAGATTGTGAATCTGACAACAGAGGCTTACGACCCCTTATTTACCGAGAAAGCTCACAAGAACTGCTAACTCATGCCCCCATGTCTAACAACATGGCTTTCTCAACTTTTAAAGGATAACAGCTATCCATTGGTCTTAGGCCCCAAAAATTTTGGTGCAACTCCAAATAAAAGTAATAACCATGCACACTACTATAACCACCCTAACCCTGACTTCCCTAATTCCCCCCATCCTTACCACCCTCGTTAACCCTAACAAAAAAAACTCATACCCCCATTATGTAAAATCCATTGTCGCATCCACCTTTATTATCAGTCTCTTCCCCACAACAATATTCATGTGCCTAGACCAAGAAGTTATTATCTCGAACTGACACTGAGCCACAACCCAAACAACCCAGCTCTCCCTAAGCTTCAAACTAGACTACTTCTCCATAATATTCATCCCTGTAGCATTGTTCGTTACATGGTCCATCATAGAATTCTCACTGTGATATATAAACTCAGACCCAAACATTAATCAGTTCTTCAAATATCTACTCATCTTCCTAATTACCATACTAATCTTAGTTACCGCTAACAACCTATTCCAACTGTTCATCGGCTGAGAGGGCGTAGGAATTATATCCTTCTTGCTCATCAGTTGATGATACGCCCGAGCAGATGCCAACACAGCAGCCATTCAAGCAATCCTATACAACCGTATCGGCGATATCGGTTTCATCCTCGCCTTAGCATGATTTATCCTACACTCCAACTCATGAGACCCACAACAAATAGCCCTTCTAAACGCTAATCCAAGCCTCACCCCACTACTAGGCCTCCTCCTAGCAGCAGCAGGCAAATCAGCCCAA SN:Z:MT_human SO:i:9505 SR:i:0
7
+ S MTh13014 TTAGGTCTCCACCCCTGACTCCCCTCAGCCATAGAAGGCCCCACCCCAGTCTCAGCCCTACTCCACTCAAGCACTATAGTTGTAGCAGGAATCTTCTTACTCATCCGCTTCCACCCCCTAGCAGAAAATAGCCCACTAATCCAAACTCTAACACTATGCTTAGGCGCTATCACCACTCTGTTCGCAGCAGTCTGCGCCCTTACACAAAATGACATCAAAAAAATCGTAGCCTTCTCCACTTCAAGTCAACTAGGACTCATAATAGTTACAATCGGCATCAACCAACCACACCTAGCATTCCTGCACATCTGTACCCACGCCTTCTTCAAAGCCATACTATTTATGTGCTCCGGGTCCATCATCCACAACCTTAACAATGAACAAGATATTCGAAAAATAGGAGGACTACTCAAAACCATACCTCTCACTTCAACCTCCCTCACCATTGGCAGCCTAGCATTAGCAGGAATACCTTTCCTCACAGGTTTCTACTCCAAAGACC SN:Z:MT_human SO:i:13014 SR:i:0
8
+ S MTh13516 ACATCATCGAAACCGCAAACATATCATACACAAACGCCTGAGCCCTATCTATTACTCTCATCGCTACCTCCCTGACAAGCGCCTATAGCACTCGAATAATTCTTCTCACCCTAACAGGTCAACCTCGCTTCCCCACCCTTACTAACATTAACGAAAATAACCCCACCCTACTAAACCCCATTAAACGCCTGGCAGCCGGAAGCCTATTCGCAGGATTTCTCATTACTAACAACATTTCCCCCGCATCCCCCTTCCAAACAACAATCCCCCTCTACCTAAAACTCACAGCCCTCGCTGTCACTTTCCTAGGACTTCTAACAGCCCTAGACCTCAACTACCTAACCAACAAACTTAAAATAAAATCCCCACTATGCACATTTTATTTCTCCAACATACTCGGATTCTACCCTAGCATCACACACCGCACAATCCCCTATCTAGGCCTTCTTACGAGCCAAAACCTGCCCCTACTCCTCCTAGACCTAACCTGACTAGAAAAGCTATTACCTAAAACAATTTCACAGCACCAAATCTCCACCTCCATCATCACCTCAACCCAAAAAGGCATAATTAAACTTTACTTCCTCTCTTTCTTCTTCCCACTCATCCTAACCCTACTCCTAATCACATAACCTATTCCCCCGAGCAATCTCAATTACAATATATACACCAACAAACAATGTTCAACCAGTAACTACTACTAATCAACGCCCATAATCATACAAAGCCCCCGCACCAATAGGATCCTCCCGAATCAACCCTGACCCCTCTCCTTCATAAATTATTCAGCTTCCTACACTATTAAAGTTTACCACAACCACCACCCCATCATACTCTTTCACCCACAGCACCAATCCTACCTCCATCGCTAACCCCACTAAAACACTCACCAAGACCTCAACCCCTGACCCCCATGCCTCAGGATACTCCTCAATAGCCATCGCTGTAGTATATCCAAAGACAACCATCATTCCCCCTAAATAAATTAAAAAAACTATTAAACCCATATAACCTCCCCCAAAATTCAGAATAATAACACACCCGACCACACCGCTAACAATCAATACTAAACCCCCATAAATAGGAGAAGGCTTAGAAGAAAACCCCACAAACCCCATTACTAAACCCACACTCAACAGAAACAAAGCATACATCATTATTCTCGCACGGACTACAACCACGACCAATGATATGAAAAACCATCGTTGTATTTCAACTACAAGAACACCAATGACCCCAATACGCAAAACTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCTCCCCACCCCATCCAACATCTCCGCATGATGAAACTTCGGCTCACTCCTTGGCGCCTGCCTGATCCTCCAAATCACCACAGGACTATTCCTAGCCATGCACTACTCACCAGACGCCTCAACCGCCTTTTCATCAATCGCCCACATCACTCGAGACGTAAATTATGGCTGAATCATCCGCTACCTTCACGCCAATGGCGCCTCAATATTCTTTATCTGCCTCTTCCTACACATCGGGCGAGGCCTATATTACGGATCATTTCTCTACTCAGAAACCTGAAACATCGGCATTATCCTCCTGCTTGCAACTATAGCAACAGCCTTCATAGGCTATGTCCTCCCGTGAGGCCAAATATCATTCTGAGGGGCCACAGTAATTACAAACTTACTATCCGCCATCCCATACATTGGGACAGACCTAGTTCAATGAATCTGAGGAGGCTACTCAGTAGACAGTCCCACCCTCACACGATTCTTTACCTTTCACTTCATCTTGCCCTTCATTATTGCAGCCCTAGCAACACTCCACCTCCTATTCTTGCACGAAACGGGATCAAACAACCCCCTAGGAATCACCTCCCATTCCGATAAAATCACCTTCCACCCTTACTACACAATCAAAGACGCCCTCGGCTTACTTCTCTTCCTTCTCTCCTTAATGACATTAACACTATTCTCACCAGACCTCCTAGGCGACCCAGACAATTATACCCTAGCCAACCCCTTAAACACCCCTCCCCACATCAAGCCCGAATGATATTTCCTATTCGCCTACACAATTCTCCGATCCGTCCCTAACAAACTAGGAGGCGTCCTTGCCCTATTACTATCCATCCTCATCCTAGCAATAATCCCCATCCTCCATATATCCAAACAACAAAGCATAATATTTCGCCCACTAAGCCAATCACTTTATTGACTCCTAGCCGCAGACCTCCTCATTCTAACCTGAATCGGAGGACAACCAGTAAGCTACCCTTTTACCATCATTGGACAAGTAGCATCCGTACTATACTTCACAACAATCCTAATCCTAATACCAACTATCTCCCTAATTGAAAACAAAATACTCAAATGGGCCTGTCCTTGTAGTATAAACTAATACACCAGTCTTGTAAACCGGAGATGAAAACCTTTTTCCAAGGACAAATCAGAGAAAAAGTCTTTAACTCCACCATTAGCACCCAAAGCTAAGATTCTAATTTAAACTATTCTCTGTTCTTTCATGGGGAAGCAGATTTGGGTACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTACATTACTGCCAGCCACCATGAATATTGTACGGTACCATAAATACTTGACCACCTGTAGTACATAAAAACCCAATCCACATCAAAACCCCCTCCCCATGCTTACAAGCAAGTACAGCAATCAACCCTCAACTATCACACATCAACTGCAACTCCAAAGCCACCCCTCACCCACTAGGATACCAACAAACCTACCCACCCTTAACAGTACATAGTACATAAAGCCATTTACCGTACATAGCACATTACAGTCAAATCCCTTCTCGTCCCCATGGATGACCCCCCTCAGATAGGGGTCCCTTGACCACCATCCTCCGTGAAATCAATATCCCGCACAAGAGTGCTACTCTCCTCGCTCCGGGCCCATAACACTTGGGGGTAGCTAAAGTGAACTGTATCCGACATCTGGTTCCTACTTCAGGGTCATAAAGCCTAAATAGCCCACACGTTCCCCTTAAATAAGACATCACGATG SN:Z:MT_human SO:i:13516 SR:i:0
9
+ L MTh0 + MTh4001 + 0M SR:i:0
10
+ L MTh4001 + MTh4502 + 0M SR:i:0
11
+ L MTh4001 + MTh4001 + 0M SR:i:1
12
+ L MTh4502 + MTh9505 + 0M SR:i:0
13
+ L MTh9505 + MTh13014 + 0M SR:i:0
14
+ L MTh13014 + MTh13516 + 0M SR:i:0
15
+ L MTh0 + MTo3426 - 0M SR:i:1
16
+ L MTo3426 - MTh4502 + 0M SR:i:1
17
+ L MTh4502 + MTo8961 + 0M SR:i:1
18
+ L MTo8961 + MTh9505 + 0M SR:i:1
19
+ L MTh9505 + MTh13516 + 0M SR:i:1
data/ext/minigraph/tex/Makefile ADDED
@@ -0,0 +1,13 @@
1
+ all:minigraph.pdf
2
+
3
+ minigraph.bbl:minigraph.bib minigraph.tex
4
+ pdflatex minigraph; bibtex minigraph
5
+
6
+ minigraph.pdf:minigraph.tex minigraph.bbl
7
+ pdflatex minigraph; pdflatex minigraph
8
+
9
+ lite:minigraph.tex
10
+ pdflatex minigraph
11
+
12
+ clean:
13
+ rm -f minigraph.bbl minigraph.log minigraph.aux