ruby-minigraph 0.0.20.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (89) hide show
  1. checksums.yaml +7 -0
  2. data/LICENSE.txt +21 -0
  3. data/README.md +62 -0
  4. data/ext/Rakefile +56 -0
  5. data/ext/cmappy/cmappy.c +7 -0
  6. data/ext/cmappy/cmappy.h +8 -0
  7. data/ext/minigraph/LICENSE.txt +23 -0
  8. data/ext/minigraph/Makefile +66 -0
  9. data/ext/minigraph/NEWS.md +317 -0
  10. data/ext/minigraph/README.md +207 -0
  11. data/ext/minigraph/algo.c +194 -0
  12. data/ext/minigraph/algo.h +33 -0
  13. data/ext/minigraph/asm-call.c +147 -0
  14. data/ext/minigraph/bseq.c +133 -0
  15. data/ext/minigraph/bseq.h +76 -0
  16. data/ext/minigraph/cal_cov.c +139 -0
  17. data/ext/minigraph/doc/example1.png +0 -0
  18. data/ext/minigraph/doc/example2.png +0 -0
  19. data/ext/minigraph/doc/examples.graffle +0 -0
  20. data/ext/minigraph/format.c +241 -0
  21. data/ext/minigraph/galign.c +140 -0
  22. data/ext/minigraph/gchain1.c +532 -0
  23. data/ext/minigraph/gcmisc.c +223 -0
  24. data/ext/minigraph/gfa-aug.c +260 -0
  25. data/ext/minigraph/gfa-base.c +526 -0
  26. data/ext/minigraph/gfa-bbl.c +372 -0
  27. data/ext/minigraph/gfa-ed.c +617 -0
  28. data/ext/minigraph/gfa-io.c +395 -0
  29. data/ext/minigraph/gfa-priv.h +154 -0
  30. data/ext/minigraph/gfa.h +166 -0
  31. data/ext/minigraph/ggen.c +182 -0
  32. data/ext/minigraph/ggen.h +21 -0
  33. data/ext/minigraph/ggsimple.c +570 -0
  34. data/ext/minigraph/gmap.c +211 -0
  35. data/ext/minigraph/index.c +230 -0
  36. data/ext/minigraph/kalloc.c +224 -0
  37. data/ext/minigraph/kalloc.h +82 -0
  38. data/ext/minigraph/kavl.h +414 -0
  39. data/ext/minigraph/kdq.h +134 -0
  40. data/ext/minigraph/ketopt.h +116 -0
  41. data/ext/minigraph/khashl.h +348 -0
  42. data/ext/minigraph/krmq.h +474 -0
  43. data/ext/minigraph/kseq.h +256 -0
  44. data/ext/minigraph/ksort.h +164 -0
  45. data/ext/minigraph/kstring.h +165 -0
  46. data/ext/minigraph/kthread.c +159 -0
  47. data/ext/minigraph/kthread.h +15 -0
  48. data/ext/minigraph/kvec-km.h +105 -0
  49. data/ext/minigraph/kvec.h +110 -0
  50. data/ext/minigraph/lchain.c +441 -0
  51. data/ext/minigraph/main.c +301 -0
  52. data/ext/minigraph/map-algo.c +500 -0
  53. data/ext/minigraph/mgpriv.h +128 -0
  54. data/ext/minigraph/minigraph.1 +359 -0
  55. data/ext/minigraph/minigraph.h +176 -0
  56. data/ext/minigraph/miniwfa.c +834 -0
  57. data/ext/minigraph/miniwfa.h +95 -0
  58. data/ext/minigraph/misc/mgutils.js +1451 -0
  59. data/ext/minigraph/misc.c +12 -0
  60. data/ext/minigraph/options.c +134 -0
  61. data/ext/minigraph/shortk.c +251 -0
  62. data/ext/minigraph/sketch.c +109 -0
  63. data/ext/minigraph/sys.c +147 -0
  64. data/ext/minigraph/sys.h +20 -0
  65. data/ext/minigraph/test/MT-chimp.fa +277 -0
  66. data/ext/minigraph/test/MT-human.fa +239 -0
  67. data/ext/minigraph/test/MT-orangA.fa +276 -0
  68. data/ext/minigraph/test/MT.gfa +19 -0
  69. data/ext/minigraph/tex/Makefile +13 -0
  70. data/ext/minigraph/tex/minigraph.bib +676 -0
  71. data/ext/minigraph/tex/minigraph.tex +986 -0
  72. data/ext/minigraph/tex/plots/CHM13-f1-90.bb.anno.gp +42 -0
  73. data/ext/minigraph/tex/plots/CHM13-f1-90.bb.anno.tbl +13 -0
  74. data/ext/minigraph/tex/plots/CHM13-f1-90.bb.mini-inter-none.win.gp +269 -0
  75. data/ext/minigraph/tex/plots/CHM13-f1-90.bb.mini-inter-none.win.sh +7 -0
  76. data/ext/minigraph/tex/plots/CHM13v1.cen.bed +23 -0
  77. data/ext/minigraph/tex/plots/CHM13v1.size +23 -0
  78. data/ext/minigraph/tex/plots/anno2tbl.js +40 -0
  79. data/ext/minigraph/tex/plots/bedutils.js +367 -0
  80. data/ext/minigraph/tex/plots/chr-plot.js +130 -0
  81. data/ext/minigraph/tex/plots/gen-anno.mak +24 -0
  82. data/ext/minigraph.patch +21 -0
  83. data/lib/minigraph/ffi/constants.rb +230 -0
  84. data/lib/minigraph/ffi/functions.rb +70 -0
  85. data/lib/minigraph/ffi/mappy.rb +8 -0
  86. data/lib/minigraph/ffi.rb +27 -0
  87. data/lib/minigraph/version.rb +5 -0
  88. data/lib/minigraph.rb +72 -0
  89. metadata +159 -0
data/ext/minigraph/test/MT-orangA.fa ADDED
@@ -0,0 +1,276 @@
1
+ >PA#NC_002083.1X
2
+ GATCACAGGCCTATCACCCTATTAATCACTCACGGGAGCTCTCCATGCATCTGGTATTTT
3
+ TTCGGGGGGGGATGCACGCGATAGCATCGCGGGCCGCTGGAACCGGAGCACCCTATGTCG
4
+ CAGGATCTGTCTTTGATTCCTACCTCATGCCATTATTAATCGCGCCTAATATCCAATATC
5
+ CTAGCCCCACCCTCAGTGTTTGAAGCTGCTATTTAATTTATGCTAGAGGACATAAAATTA
6
+ CCAAAAAAAAATAAACGAACTCTCAACAACCCTACCCCATCAACCCAACAAAATCCAATT
7
+ TTTATCTTTAGGCTATGTGCACTTTCAACAGGCACCCCTCAACTAACACAATCTCCTTCT
8
+ TATCCCACCCACCAACCCCCCCCCCCCCTTCCTCCCTCTTTCTCCATTTTCCCCACAAAC
9
+ ACCGCTACTACCCCCACACCCCAGACCAACCCAACCCAAAAGACACCCCGCACGGTTTAT
10
+ GTAGCTTATTCTATCCAAAGCAATGCACTGAAAATGTCTCGACGGGCCCACACGCCCCAT
11
+ AAACAAATAGGTTTGGTCCTAGCCTTTCTATTAGCTCTTAGTGAGGTTACACATGCAAGC
12
+ ATCCCCGCCCCAGTGAGTCGCCCTCCAAGTCACTCTGACTAAGAGGAGCAAGCATCAAGC
13
+ ACGCAACAGCGCAGCTCAAGACGCTCAGCCTAGCCACACCCCCACGGGAGACAGCAGTGA
14
+ TAAGTCTTTAGCAATAAACGAAAGTTCAACTAAGCTACACTAACCCCAGGGTTGGTCAAC
15
+ TTCGTGCCAGCCACCGCGGTCACACGATTAGCCCAAGTTAATAGAGATCGGCGTAGAGAG
16
+ TGTTTTAGATTCTTTTTCTCCCCAATAAAGCTAAAATTTACCTGAGTTGTAGAAAACTTA
17
+ AGCTAATACAAAATAAACTACGAAAGTGGCTTTAATATATCTGAACACACAATAGCTAAG
18
+ GCCCAAACTGGGATTAGATACCCCACTATGCTTAGCCCTAAACTTTAACAGTTAAATCAA
19
+ CAAAACTGCTCGCCAGAACACTACGAGCCACAGCTTAAAACTCAAAGGACCTGGCGGTGC
20
+ TTCATATCCCTCTAGAGGAGCCTGTTCTGTAATCGATAAACCCCGATCAACCTCACCACC
21
+ CCTTGCTCAGCCTATATACCGCCATCTTCAGCAAACCCTGATGAAGGCCACGAAGTAAGC
22
+ GCAAGCATCCACATAAAGACGTTAGGTCAAGGTGTAGCCCATGGAGTGGCAAGAAATGGG
23
+ CTACATTTTCTACTTCAGAAAACTACGATAGCCCTCATGAAACCTGAGGGTCGAAGGTGG
24
+ ATTTAGCAGTAAACTAAGAGTAGAGTGCTTAGTTGAACAGGGCCCTGAAGCGCGTACACA
25
+ CCGCCCGTCACCCTCTTCAAGTATATTTCAGGGACTACCTAACTAAAACCCCCACGCATC
26
+ TATATAGAGGAGGCAAGTCGTAACATGGTAAGCGTACTGGAAAGTGCGCTTGGACGAACC
27
+ AGAGGGTAGCTTAACACAAAGCACCCGGCTTACACCTGGGAGATTTCAATTCAACCTGGC
28
+ CCCTCTGAGCTAACCCTAGCCCCAAACCCAACCCACCCTACTACCAACCAACCCTAACCA
29
+ AACCATTCACCCAAACAAAGTATAGGCGATAGAAATTACAATCCGGCGCAATAGACACAG
30
+ TACCGTAAGGGAAAGATGAAAAAACACAACCAAGCACAACATAGCAAGGACTAACCCCTG
31
+ TACCTTTTGCATAATGAATTAACTAGAAACAACTTTGCAAGGAGAGCCAAAGCCAAGACC
32
+ CCCGAAACCAGACGAGCTACCCATAAACAGCTAAAAGAGCACACCCGTCTATGTAGCAAA
33
+ ATAGTGGGAAGATTTATGGGTAGAGGCGACAAACCTACCGAGCCTGGTGATAGCTGGTTG
34
+ TCCAAGACAGAATCTTAGTTCAACTTTAAATTTACTTACAGAACCCCTAATCCCCTCGTA
35
+ AATTTAATTGCTAGTCTAAAGAGGAACAGCTCTTTAGACACTAGGAAAAAACCTTAAAAA
36
+ GAGAGTAAAAAACACAACACCCATAGTGGGCCCAAAAGCAGCCATCAATTAAGAAAGCGT
37
+ TCAAGCTCGACACCTAAACACCAAAAAATACCAAACACAAAACTGAACTCCTTACTCCCC
38
+ ATTGGACTAATCTATTGCCCCATAGAAGAAACAATGTTAGTATAAGTAACATGAAGATAT
39
+ TCTCCCCCGCATAAGTCTACGTCAGACCGAAACATCACACTGACAATTAACGGTCCAATA
40
+ TGCATAGTTAACAAATAAACTATTATTTTTTCCCCCCGTTAATCCAACACAGGCATGCCT
41
+ ATAAGGAAAGGTTAAAAAAAGTAAAAGGAACTCGGCAAATCTCACCCCGCCTGTTTACCA
42
+ AAAACATCACCTCTAGCATTACCAGTATTAGAGGCACCGCCTGCCCGGTGACATACGTTT
43
+ AACGGCCGCGGTACCCTGACCGTGCAAAGGTAGCATAATCACTTGTTCCTTAAATGGGGA
44
+ CTTGTATGAATGGCTTCACGAGGGTTCGACTGTCTCTTACTTTTAACCAGTGAAATTGAC
45
+ CTGCCCGTGAAGAGGCGGGCATAACATAACAAGACGAGAAGACCCTATGGAGCTTCAATT
46
+ TACCAGTGCAAATAACATACAACAAGCCCACAGGCCCTAAATCACCAAACCTGCACTGAA
47
+ GATTTCGGTTGGGGCGACCTCGGAGCACAACCCAACCTCCGAGAAACACATGTTAAGACC
48
+ TCACAAGTCAAAACGAACTTCCACACACAATTGATCCAACAACTTGACCAACGGAACAAG
49
+ TTACCCTAGGGATAACAGCGCAATCCTGTTCTAGAGTCCATATCAACAACAGGGTTTACG
50
+ ACCTCGATGTTGGATCAGGACATCCTAATGGTGCAGCCGCTATTAAAGGTTCGTTTGTTC
51
+ AACGATTAAAGTCCTACGTGATCTGAGTTCAGACCGGAGCAATCCAGGTCGGTTTCTATC
52
+ TATTTCACATTTCTCCCTGTACGAAAGGACAAGAGAAATGGGGCCTACTTCACATAAGCG
53
+ CCTTTCCCAAACAAATGATATCATCTCAATTTAACACCACACCAACACCCACCCAAGAAA
54
+ AGGGCTATGTTAAGATGGCAGAGCCCGGTAACTGCATAAAATTTAAAGCTTTACAGTCAG
55
+ AGGTTCAACTCCTCTTCTTAACAATATGCCCATAATCAACCTCCTACTCCTCATTATATC
56
+ CATCCTAATCGCCATAGCATTTCTAATGCTAACCGAACGAAAAATCCTAGGCCACACACA
57
+ ACTACGCAAAGGGCCCAACATTGTGGGCCCCTACGGCTTACTACAACCCTTTGCCGACGC
58
+ CCTAAAACTATTCACCAAAGAACCCCTAAAACCCTCCACATCAACCATCACCCTTTACAT
59
+ TATTTCCCCCGCCCTAGCCCTTACCATTGCCCTCCTACTATGAACCCCCCTCCCTATGCC
60
+ CATCCCCCTAATCAACCTCAACTTAGGCCTCCTATTTATCCTAGCCGCGTCAAGCCTAAC
61
+ CGTCTACTCCATCCTCTGATCAGGATGAGCATCTAACTCAAACTACGCCCTAATCGGCGC
62
+ ATTGCGGGCGGTAGCCCAAACGATCTCATACGAAATTACCCTAGCCCTTATCCTGTTATC
63
+ AGTACTACTAATAAGCGGCTCTTTTAACCTCTCCGCCCTCATCACAACACAAGAACACTC
64
+ ATGACTACTTCTACCATCATGACCTCTAGCCCTAATATGATTTATTTCAACACTAGCAGA
65
+ AACCAACCGAGCCCCCTTCGACCTCACCGAAGGAGAATCCGAACTAGTTTCGGGCTTTAA
66
+ CACTGAATACGCCGCAGGTCCATTCGCCCTATTCTTCATAGCCGAATATACAAACATTAT
67
+ CTTAATAAACGCCCTCACCACTATAATTTTCCTAGGAACAACATTCAACATCCACTCCCC
68
+ AGAACTCTACACAACCCTCTTCACCATCAAAACCCTACTCCTAACCTCCCTATTCCTATG
69
+ AATTCGATCAACATACCCCCGATTCCGCTACGACCAACTCATGCACCTTCTATGAAAAAA
70
+ TTTCCTGCCACTCACCCTAGCACTACTAATATGACACATCTCCGTACCCATTGCAACCTC
71
+ CGGCATTCCCCCACAAACCTAAGAAATATGTCTGACAAAAGAGTTACTTTGATAGAGTAA
72
+ AAAATAGAGGTCTAAATCCCCTTATTTCTAGGATTATGGGAGTTGAACCCACCCCTGAGA
73
+ ATCCAAAATTCTCCGTGCCACCCATCACACCCTATCCTAAAGTAAGGTCAGCTAAATAAG
74
+ CTATCGGGCCCATACCCCGAAAATGTTGGTTATACCCTTCCCGTACTAATTAACCCCTTG
75
+ GCCCAACCCATCATTTACCCCACCATCTTCACAGGCACGCTCATTACAGCACTGAGCTCC
76
+ CACTGATTCTTTGCCTGACTGGGACTAGAAATAAATATACTCGCTTTCATCCCAGTCCTA
77
+ ACCAAAAAAACAAGCCCCCGCTCCACAGAAGCCGCCATTAAATATTTCCTCACACAGGCA
78
+ ACCGCATCCATAATCCTCCTGATAGCCATCCTCTACAACAACATACTTTCCGGACAGTGA
79
+ ACCACAACCAACACCACCAACCCATATTCATCTCTAATAATCGTAACCGCCCTAGCAATG
80
+ AAGCTAGGAATAGCCCCCTTCCACTTTTGAGTCCCAGAAGTCACCCAAGGAGTCCCCCTG
81
+ ACATCCGGCTTACTCCTCCTTACATGACAAAAATTAGCCCCCATTTCAATTATATACCAA
82
+ ATATCTTCATCGGTAGACACAAACATCCTCCTCACCCTCTCAATTCTATCTATCCTAGTA
83
+ GGCGGCTGAGGCGGACTAAACCAAACCCAACTACGCAAAATCCTGGCATACTCCTCAATC
84
+ ACCCATATAGGATGAATAATAGCAGTACTACCATATAACCCAGACATCACTATCCTCAAC
85
+ CTAATCATCTACATCATCCTGACAACTACCGCATTCCTAATCCTCGACTTAAACTCTAGT
86
+ GTCACAATCCTAATATTAACCCGCACCTGGAACAAGCTGACATGACTAATACCCTTAATC
87
+ CCATCAACCTTATTATCCCTAGGGGGCCTGCCACCACTAACCGGCTTCCTGCCCAAATGA
88
+ GCCATCATTGAAGAATTTGCAAAAAATGGCAATCTCATTACCCCCACAATCATGGCTATT
89
+ ATCACCCTCCTCAACCTCTACTTCTACGTACGCCTAATCTACGCCACCTCAATCACACTA
90
+ CTCCCCATATCTAACAACGCAAAAATGAAATGACAGTTCGAAAACACAAAACCCACCCCT
91
+ CTTCTCCCCACACTCACCATTCTTACCACCCTACTCCTACCTATCTCCCCTCTCATCCTA
92
+ TCTATCTCATAGAAATTTAGGTTAACACAGACCAAGAGCCTTCAAAGCCCTCAGCAAGTC
93
+ ACAGCACTTAATTTCTGTAACACTAAGGACTGCAAAGCCCCGCTCTGCATCAACTGAACG
94
+ CAAACCAGCCACTTTAATTAAGCTAAGCCCTCCCTAGACCGATGGGACTTAAACCCACAA
95
+ ACATTTAGTTAACAGCTAAACACCCTAATCAATTGGCTTCAGTCCACTTCTCCCGCCGCG
96
+ GGGAAAAAGGCGGGAGAAGCCCCGGCAGGCCTTAAAGCTGCTCCTTCGAATTTGCAATTC
97
+ AACATGACAATCACCTCGGGGCTGGTAAAAAGAGGTCTAACCCCTGTTCTTAGATTTACA
98
+ GCCTAATGCCTTAACTCGGCCATTTTACCCCCCCCCCCCCTTTTTTTCTCCACTAATGTT
99
+ CGCCGACCGCTGGCTATTCTCCACGAACCACAAAGACATCGGGACACTATACCTGTTATT
100
+ CGGCGCATGGGCTGGAGTCCTAGGCACTGCCCTAAGCCTCCTCATTCGAGCTGAACTGGG
101
+ CCAACCCGGCAACCTTCTAGGCAATGACCATATCTACAATGTCATCGTCACAGCTCATGC
102
+ ATTCGTAATAATTTTCTTTATAGTCATACCCATTATAATTGGAGGCTTTGGCAACTGACT
103
+ AGTGCCCCTAATAATCGGCGCCCCCGATATAGCATTCCCGCGCATAAATAATATAAGCTT
104
+ CTGACTCCTCCCCCCCTCCTTTCTCCTACTGCTCGCTTCTGCTACAGTAGAGGCTGGCGC
105
+ AGGAACAGGCTGAACAGTCTATCCGCCCCTAGCAGGAAACTACTCTCACCCAGGAGCCTC
106
+ TGTAGACTTAACAATCTTCTCTTTACACCTAGCAGGCATTTCCTCTATCCTAGGAGCTAT
107
+ CAATTTCATCACAACAATTATTAATATAAAACCCCCTGCAATATCCCAATACCAAACCCC
108
+ CCTCTTCGTCTGATCAGTCTTGATCACAGCAGTCCTACTTCTCCTTTCCCTCCCAGTCCT
109
+ AGCCGCTGGCATCACCATACTACTAACAGATCGCAACCTAAACACCACATTCTTTGACCC
110
+ AGCCGGAGGTGGAGATCCCATCCTATATCAGCACCTATTCTGATTTTTTGGCCACCCTGA
111
+ AGTCTACATTCTCATCCTGCCGGGTTTCGGCATAATCTCCCACATCGTAACACACTATTC
112
+ CGGAAAAGAAGAGCCATTTGGGTACATAGGCATAGTCTGAGCCATAGTCTCAATTGGCTT
113
+ CCTGGGCTTTATCGTATGGGCCCACCACATATTCACAGTAGGAATAGACGTGGACACACG
114
+ AGCCTACTTCACCTCCGCTACCATAATCATTGCCATCCCCACCGGCGTCAAAGTATTTAG
115
+ CTGACTCGCTACACTCCACGGAAGCAACACTAAATGATCTGCCGCAATCCTCTGAGCCTT
116
+ AGGATTCATTTTCCTCTTCACCGTAGGCGGCCTAACAGGCATCGTACTAGCAAACTCATC
117
+ ACTAGACATTGTATTACACGATACATACTACGTTGTAGCCCACTTTCATTACGTCCTATC
118
+ AATAGGAGCTGTATTCGCCATCATGGGAGGCTTCATCCACTGGTTCCCACTATTCTCAGG
119
+ CTACACCTTAGACCAGACCTATGCTAAAATTCACTTCATCACCATATTTATCGGCGTAAA
120
+ TTTAACTTTCTTCCCACAACATTTCCTCGGCCTGTCAGGCATACCCCGACGCTACTCCGA
121
+ CTACCCCGACGCGTACACCACCTGAAATATTTTATCATCCGCAGGCTCATTTATCTCCCT
122
+ AACAGCAGTCATACTAATAATTTTCATAATTTGAGAAGCCTTCGCCTCAAAACGAAAAGT
123
+ CCCAATAGTTGAACAACCCTCCACAAGCCTAGAGTGATTGTACGGATGCCCCCCACCCTA
124
+ CCACACATTTGAAGAACCCGTCTATATAAAACCAGAACAAAAAAGGAAGGAATCGAACCT
125
+ CCTAAAGCTGGTTTCAAGCCAACCCCACAACCTCCATGACTTTTTCAAGAGATACTAGAA
126
+ AAACCATTTCATGACTTTGTCAAAGTTAAGTTACAGGCCAAACCCTGTGTATCTTAATGG
127
+ CGCACGCAGCACAGGTAGGTTTACAAGACGCTACCTCTCCTATCATAGAAGAATTGGTCA
128
+ TCTTTCACGACCACGCCCTCATAATCATTTTCCTAATCTGCTTCCTAGTCCTGTACGCCC
129
+ TATTCCTAACACTCACAACAAAACTCACCAACACCAGCATCTCAGACGCCCAAGAGATAG
130
+ AGACTATTTGAACTATCCTACCGGCCATCATCCTAATTCTAATCGCCCTCCCATCCCTAC
131
+ GCATCCTCTACTTAACAGACGAGATCAACGACCCTTCCTTCACCATCAAATCAATCGGTC
132
+ ATCAATGATACTGAACCTACGAGTACACTGACTACGGTGGATTGATCTTCAACTCTTACA
133
+ TGCTCCCACCACTATTCCTAGAACCAGGCGACCTTCGACTCCTCGACGTCGACAACCGAG
134
+ TAGTCCTCCCAGTCGAAGCTCCCGTTCGCATAATAATCACATCCCAAGACGTCTTACACT
135
+ CATGAACTGTACCCTCACTAGGCCTGAAAACGGACGCAATCCCCGGACGCCTAAACCAAA
136
+ CCACATTCACTGCCACGCGACCAGGAGTGTACTATGGCCAATGCTCAGAAATCTGTGGAG
137
+ CTAACCACAGCTTTATGCCTATCGTCCTAGAACTAATCCCCCTAAAAATCTTCGAAATAG
138
+ GGCCCGTATTCACTTTATAACTTCCCCCACCCCCACAACCCATCCTACCCCCTTTCCTGA
139
+ GGCCCACTGCAAAGCTAATCTAGCATTAACCTTTTAAGTTAAAGACTAAGAGAATCAACC
140
+ CCTCTTTGCAGTGAAATGCCCCAACTAAATACCACCACATGGCCCACCATCATCACCCCA
141
+ ATACTCCTTGCACTATTCCTCATCACTCAACTAAAACTACTAAACTCACACCTCCACCCA
142
+ CCCACCCCACCAAAATTCACTAAACCAAAACTCCACGCCAAACCCTGAGGACCAAAATGA
143
+ ACGAAAGTCTATTTACCCCATTCATTACCCCCACAGTACTAGGCCTCCCCGCCGCAGTAC
144
+ TAGTCATCTTATTTCCCCCCTTACTGATCCCCACCTCCAAACATCTCATCAACAACCGAC
145
+ TAATTATTATCCAACAATGACTAATCCGACTCATCCTAAAACAAATAATAACCACCCATA
146
+ ACGCTAAAGGACGAACTTGATCCCTCATACTAACGTCCCTAATCATTTTCATCGCCTCAA
147
+ CCAACCTCCTAGGACTCCTCCCCTACTCATTTACACCAACCACCCAACTATCCATAAATT
148
+ TAGCTATAGCAATTCCCTTATGAGCAAGCACGGTAGCTATGGGCCTTCGCTTCAAAGCCA
149
+ AAATTACCCTAACCCACCTCTTACCACAAGGTACCCCCACACCTCTCATCCCTATACTAA
150
+ TTATTATTGAAACCGTCAGCCTTTTCATTCAACCACTAGCCTTAGCCGTACGCCTAACTG
151
+ CTAACATCACTGCAGGCCACCTACTCATGCACCTAATCGGAAGCTCTGCACTAGCTATAC
152
+ TAGCCATCAACCTCCCCCTAACCCTCATCACCCTTACAATCTTAACCCTGCTAACAATCC
153
+ TGGAGACTGCCATCGCCCTAATTCAAGCCTACGTCTTCACACTTCTAGTAAGCCTCTACC
154
+ TGCACGACAACTCATAATGGCCCATCAATCACACGCCTACCACATAGTAAAACCTAGCCC
155
+ ATGACCCCTAACAGGAGCTCTCTCAGCCCTCCTAACAACATCTGGCCTAACCATGTGATT
156
+ CCACTTCCACTCCACAACCCTACTATTAACAGGCCTACTAACCAATGCACTAACCATATA
157
+ CCAATGGTGACGAGATGTAGTGCGAGAAAGCACATACCAAGGCCACCACACACTACCCGT
158
+ CCAAAAAGGCCTCCGATATGGAATAATCCTATTCATCACTTCAGAAGTCTTTTTCTTCGC
159
+ CGGATTCTTCTGAGCATTCTACCACTCCAGCCTAGCCCCCACCCCTCAACTTGGAGGACA
160
+ CTGACCCCCAACAGGCATTATCCCCCTCAACCCCCTAGAAGTCCCACTCCTAAACACATC
161
+ CGTACTACTCGCATCAGGAGTCTCAATTACCTGAGCCCATCACAGCCTGATGGAAAATAA
162
+ TCGAACCCAAATAATTCAAGCACTACTCATCACAATCTTACTAGGCATCTACTTCACTCT
163
+ CCTTCAGGCTTCAGAATACATTGAAGCTCCTTTCACCATCTCTGACGGCATCTACGGCTC
164
+ AACATTCTTCATAGCCACGGGATTCCACGGCCTCCACGTCATTATCGGATCAACTTTCCT
165
+ CACTGTATGCCTAGCCCGCCAGCTATTATTCCACTTCACATCCAAACATCACTTTGGCTT
166
+ TGAGGCCGCCGCCTGATACTGGCACTTTGTAGACGTAGTCTGACTGTTTCTGTACGTCTC
167
+ CATCTACTGATGAGGTTCCTACTCTTTTAGTATAAACAGTACCGTTAACTTCCAATTAAC
168
+ TAGTTTTGACAACGCCCAAAAAAGAGTAATTAACTTCGTCCTAGCTCTAACAGTCAACAC
169
+ CCTCCTAGCCCTGCTACTAATAACCATCACATTCTGACTACCACAACTCTACCCCTACAT
170
+ AGAAAAATCCGACCCATACGAATGTGGATTTGACCCCGCATACCCCGCTCGCATTCCTTT
171
+ CTCCATAAAATTTTTCTTAGTAGCCATCACCTTCCTACTATTCGACCTAGAAATCGCCCT
172
+ GCTACTACCCCTGCCATGGGCCCTACAAACAACCAACTTACCACTAATAACTACATCATC
173
+ ACTTATATTAATTATCATCCTAGCCCTAGGCCTAACTTACGAATGATCACAAAAAGGATT
174
+ AGACTGAGCCGAATTGGTAAATAGTTTAAACAAAACAAATGATTTCGACTCATTAAATTA
175
+ TGACAGCCATATTTACCAAATGCCCCTTATCTACATAAATATCACACTAGCATTCACCAT
176
+ ATCACTCCTAGGCATACTAGTCTACCGCTCACACCTAATATCTTCTCTACTATGTCTAGA
177
+ AGGAATAATATTATCATTGTTCATTATAATTACTCTCATAACCCTCAACACCCACTCTCT
178
+ CCTAGCTAACATCATACCCATCACCATGCTAGTCTTCGCTGCCTGCGAAGCAGCAGTAGG
179
+ CCTCGCCCTACTAGCCTCAATCTCCAATACATACGGCCTAGACTACGTCAACAACCTAAA
180
+ CCTACTTCAATGCTAAAACTAATTATCCCAACAATCATACTGCTGCCCCTAACATGACTC
181
+ TCCAAAACGCACATAATCTGAATCAACACCACCACCCACAGCCTAATCATCAGCTCCATC
182
+ CCCCTACTATTCCTCAATCAAACCAACAGCAACCTGTACAGCTACTCCCTTCTTTTCTCC
183
+ TCCGACCCCTTATCAACCCCCCTTCTAATACTAACAACCTGACTCCTACCCCTCATAATT
184
+ ATAGCAAGCCAACACCATCTATCCAACGAACCCCCATCACGAAAAAAATTATACCTCACC
185
+ ATACTAATCTCTCTTCAAATCTCCCTAATCATAACATTCACAGCCACAGAGCTAATTATA
186
+ TTTTATATCCTCTTCGAAACCACTCTCATCCCCACCCTAGTCATTATCACCCGCTGAGGC
187
+ AACCAGCCAGAGCGCTTAAATGCAGGCACATACTTTCTATTCTACACACTAGTAGGCTCC
188
+ CTCCCCCTACTCATTGCCCTAATCCACACCTACAACACCCTAGGCTCGCTTAACATTGTA
189
+ TTACTAACTCTCACCGCCCGGGAGCTAACAGACTCCTGATCCAACAGCCTAATATGACTA
190
+ GCGTACACAATAGCTTTCATAGTAAAAATACCCCTCTACGGACTACACCTATGACTCCCT
191
+ AAAGCCCATGTAGAAGCCCCCATTGCCGGCTCAATAGTACTCGCCGCAGTGCTCTTAAAA
192
+ CTAGGTGGTTACGGTATAATACGCCTTATCCCCATTCTCAATCCCCTAACTAAACACATA
193
+ GCCTACCCCTTTATCATACTATCCCTATGAGGCATAATCATAACAAGCTCCATCTGCTTA
194
+ CGACAAACCGACCTAAAATCACTCATCGCATACTCCTCAGTCAGCCACATAGCGCTTGTT
195
+ GTAGCAGCTATCCTCATTCAAACCCCCTGAAGCTTCACCGGCGCAACCACCCTCATAATT
196
+ GCCCATGGACTCACATCCTCCCTACTGTTCTGCCTAGCAAACTCAAACTACGAACGAACC
197
+ CACAGCCGCATCATAATCCTCTCTCAAGGCCTTCAAACTCTACTCCCCCTAATAGCCCTC
198
+ TGATGACTTCTAGCAAGCCTCACTAACCTTGCCCTACCACCCACCATCAACCTACTAGGA
199
+ GAACTCTCCGTACTAATAGCCATATTCTCTTGATCTAACATCACCATCCTACTAACAGGA
200
+ CTCAACATACTAATCACAACCCTATACTCTCTCTATATATTCACCACAACACAACGAGGT
201
+ ACACCCACACATCACACCAACAACATAAAACCTTCTTTCACACGTGAAAACACCCTCATG
202
+ CTCATACACCTATCCCCCATTCTCCTCTTGTCCCTCAACCCCAGCATCATCGCTGGATTC
203
+ GCCTACTGTAAATATAGTTTAACCAAAACATCAGATTGTGAATCTAATAATAGGGCCCAC
204
+ AACCCCTTATTTACCGAGAAAGCTCACAAGAACTGCTAACTCTCACCCCATGTGTAACAA
205
+ CATGGCTTTCTCAACTTTTAAAGGATAACAGCTATCCCTTGGTCTTAGGACCCAAAAATT
206
+ TTGGTGCAACTCCAAATAAAAGTAACAGCCATGTTTACCACCATAACTGCCCTCACCTTG
207
+ ACTTCCCTAATCCCCCCCATTACCGCTACCCTCATTAACCCCAACAAAAAAAACTCATAC
208
+ CCCCACTATGTAAAAACTGCCATCGCATCCGCCTTTACTATCAGCCTTATCCCAACAACA
209
+ ATATTTATCTGCCTAGGACAAGAAACCATCGTCACAAACTGATGCTGAACAACCACCCAG
210
+ ACACTACAACTCTCACTAAGCTTCAAACTTGACTACTTCTCCATAACATTCCTCCCCGTA
211
+ GCACTACTCATCACTTGATCCATTATAGAATTTTCACTATGGTATATAGCCTCAGACCCA
212
+ AACATCAACCAATTTCTCAAATTCCTCCTTATTTTCCTAATCACCATAATTATCCTAGTC
213
+ ACTGCCAATAACCTACTCCAACTCTTCATCGGCTGAGAGGGCGTAGGGATCATATCCTTC
214
+ CTGCTCATTAGTTGATGATACGCCCGAACAGACGCCAACACGGCAGCTATTCAAGCAATC
215
+ CTATACAATCGTATCGGCGATATTGGCTTCATCCTGGCTCTAGCATGATTCCTCCTACAC
216
+ TCCAACTCATGGGAACTACAACAAGTATTCCTCCTAAACAATAACCCTAACCTCCTCCCA
217
+ CTACTAGGACTCCTCCTAGCCGCAGCTGGCAAATCAGCCCAACTAGGCCTTCACCCCTGA
218
+ CTACCCTCAGCCATAGAAGGCCCAACCCCCGTCTCAGCCCTACTTCACTCAAGCACCATG
219
+ GTCGTGGCTGGGGTCTTCCTACTCATCCGCTTTCACCCATTAACAGAAAACAGCCCACAT
220
+ ATCCAAACCCTTACACTATGCTTAGGGGCCATCACCACCCTGTTCGCAGCAATCTGCGCC
221
+ CTCACACAAAACGACATTAAGAAAATCGTAGCTTTCTCCACCTCAAGTCAACTAGGACTT
222
+ ATAATGGTCACAATTGGCATTAACCAGCCACACCTGGCACTCCTCCACATCTGCACCCAC
223
+ GCCTTCTTCAAAGCCCTTTTATTCATATGTTCTGGGTCCATCATCCACAACCTCAACAAT
224
+ GAGCAAGACATCCGAAAAATAGGAGGACTACTCAAAACCATACCCCTAACCTCAACCTCC
225
+ CTCACTATCAGCAGCCTAGCCCTCGCAGGAATACCCTTCCTCTCAGGCTTCTACTCCAAA
226
+ GACCTCATTATCGAGACCGCAAACATATCCTATACCAACACCTGAGCCCTGTCTATCACT
227
+ CTCATCGCCACCTCCTTAACAGGCGCCTACAGCACTCGAATAATCCTCCACACCCTTACA
228
+ AGCAAACCCCACTTCCCAACCCCAATCTCTATCAATGAAAACAACCCCACTCTACTTAAA
229
+ CCCATCAAGCGCCTTATGCTAGGAAGCCTATTCGCAGGATTCCTAATCACCAACAACATC
230
+ CCCCCTATATCCCTGCCCCAAGTAACAACCCCCCCTTACCTAAAACTCGCAGCTCTAGCT
231
+ GCCACCCTCCTAGGTCTCCTAGTAGCCCTAGACTTAAACTACCTAGCCAACAAACTCAAG
232
+ ACAAAAACCCCTCCACCCACATTCTATTTCTCCATCATACTCGGATTCTACCCTAGCATC
233
+ ATCCACCGCATAATCCCCCACCTAAGCCTTCTCATAAGCCAAAACTTATCCCTACTCCTA
234
+ CTAGACCTAACCTGACTAAAAAAACTAATACCCAAAACAATCTCACAACACCAAACCTCA
235
+ GCCTCCATCACTATTTCAACCCAAAAAGGTTTAATCAAACTCTACTTCCTCTCTTTCCTC
236
+ ATCCCACTCCTCCTAATCCTCCTTATAATCTCATAACCTATTACCCCGAGCAATCTCAAT
237
+ TACAACATAAACACCAACAAATAACGTTCAACCAGTAACCACCACCAACCAACGCCCATA
238
+ ATCATATAAAGCCCCCGCACCAATAGGATCCTCCCGAATCAACCCCGACCCTTCCCCTTC
239
+ ATAAATTATCCAGCTCCCCACGCTATTAAAATTCACCACTACCACCACTCCATCATACTC
240
+ TTTTACCCACAACACCAGCCCCACTTCCATCACTAATCCCACCAGAACACTCACCAATAC
241
+ CTCAACCCCTGACCCCCATGCCTCAGGATATTCCTCAATAGCTATTGCCGTAGTATACCC
242
+ AAAAACAACCATCATACCCCCTAAATAAATTAAAAAAACCATTAAACCCATATAACCTCC
243
+ CCCACAATTTAAAATAACTGCACACCCAACCGCACCACTAATAATCAACACTAAACCCCC
244
+ ATAAATAGGAGAGGGCTTAGAAGAAAACCCCACGAACCCTATCACTAAAATTACACTCAA
245
+ CAGAAACAAAGCATATGTCATTGTTCTCGCATAGACTGTGACTATGACCAATGGTATGAA
246
+ AAAACATCGTTGTACCTCAACTACAAGAACACTAATGACCTCAACACGTAAAACCAACCC
247
+ ACTAATAAAATTAATCAACCACTCACTTATCGACCTCCCCACCCCATCAAACATCTCCGC
248
+ ATGATGGAACTTCGGCTCACTCCTAGGCGCCTGCTTAATCATCCAAATCACCACTGGACT
249
+ ATTCCTAGCTATACATTATTCACCAGACGCCTCCACTGCCTTTTCATCAATCGCCCACAT
250
+ CACTCGAGATGTAAACTACGGCTGAATAATTCGCCACCTCCACGCTAACGGCGCCTCAAT
251
+ ATTCTTTATCTGCCTCTTCTTACATATCGGCCGAGGCCTATACTATGGCTCATTCACCCA
252
+ CCTAGAAACCTGAAACATCGGCATCATCCTACTATTTACAACTATAATAACAGCCTTCAT
253
+ AGGTTACGTCCTCCCATGAGGCCAAATATCCTTCTGAGGAGCCACAGTAATCACAAATCT
254
+ ACTGTCCGCCATCCCATACATTGGAACAGACCTGGTCCAATGAGTCTGAGGTGGCTACTC
255
+ AGTAAATAGCCCCACTCTAACACGATTCTTCACCCTACACTTCATACTACCCTTCATTAT
256
+ TACAGCCCTAACAACTCTACACCTCTTATTCCTACACGAAACAGGATCAAATAACCCCCT
257
+ GGGAATCCCCTCCCATTCCGACAAAATCACCTTCCACCCCTACTACACAATCAAAGACAT
258
+ CCTAGGCCTACTCCTTTTTCTCCTCGCCCTAATAACACTAACACTACTCTCACCAGACCT
259
+ CCTAAGCGACCCAGACAACTACACCTTAGCTAACCCCCTAAGCACCCCACCCCACATTAA
260
+ ACCCGAATGATATTTCCTATTCGCCTACGCAATCCTACGATCCGTCCCCAACAAACTAGG
261
+ AGGTGTAATAGCCCTCATACTATCCATCCTAATCCTAACAACAATCCCTGCCCTTCACAT
262
+ GTCCAAGCAACAGAGCATAACATTTCGCCCATTGAGCCAATTCCTATATTGACTTTTAAT
263
+ CGCCGACCTTCTAATTCTCACCTGAATTGGAGGGCAACCAGTAAGCTACCCCTTCATCAC
264
+ CATTAGCCAAGTAGCATCCACATTGTACTTCACTACTATCCTTCTACTTATACCAGCCTC
265
+ TTCCCTGATCGAAAACCACATACTCAAATGAACCTGCCCCTGTAGTACAAATAAGTACAC
266
+ CAGCCTTGTAACCTGAAAATGAAGACCCTCTTCCATGGGCAAAAAAAATCAGAGAAAAAG
267
+ CACTTAACTTCACCGTCAGCCCCCAAAGCCAACATTCTAATTTTAAACTACTCTCTGTTC
268
+ TTTCATGGGGGACCAGATTTGGGTGCCACCCCAGTACTGACCCATTTCTAACGGCCTATG
269
+ TATTTCGTACATTCCTGCTAGCCAACATGAATATCACCCAACACAACAATCGCTTAACCA
270
+ ACTATAATGCATACAAAACTCCAACCACACTCGACCTCCACACCCCGCTTACAAGCAAGT
271
+ ACCCCCCCATGCCCCCCCACCCAAACACATACACCGATCTCTCCACATAACCCCTCAACC
272
+ CCCAGCATATCAACAGACCAAACAAACCTTAAAGTACATAGCACATACTATCCTAACCGC
273
+ ACATAGCACATCCCGTTAAAACCCTGCTCATCCCCACGGATGCCCCCCCTCAGTTAGTAA
274
+ TCCCTTACTCACCATCCTCCGTGAAATCAATATCCCGCACAAGAGTGCTACTCCCCTCGC
275
+ TCCGGGCCCATAAAACCTGGGGGTAGCTAAAGTGAGCTGTATCCGGCATCTGGTTCTTAC
276
+ TTCAGGGCCATAAAACCCAAGATCGCCCACACGTTCCCCTTAAATAAGACATCACGATG
data/ext/minigraph/test/MT.gfa ADDED
@@ -0,0 +1,19 @@
1
+ S MTh0 GATCACAGGTCTATCACCCTATTAACCACTCACGGGAGCTCTCCATGCATTTGGTATTTTCGTCTGGGGGGTATGCACGCGATAGCATTGCGAGACGCTGGAGCCGGAGCACCCTATGTCGCAGTATCTGTCTTTGATTCCTGCCTCATCCTATTATTTATCGCACCTACGTTCAATATTACAGGCGAACATACTTACTAAAGTGTGTTAATTAATTAATGCTTGTAGGACATAATAATAACAATTGAATGTCTGCACAGCCACTTTCCACACAGACATCATAACAAAAAATTTCCACCAAACCCCCCCTCCCCCGCTTCTGGCCACAGCACTTAAACACATCTCTGCCAAACCCCAAAAACAAAGAACCCTAACACCAGCCTAACCAGATTTCAAATTTTATCTTTTGGCGGTATGCACTTTTAACAGTCACCCCCCAACTAACACATTATTTTCCCCTCCCACTCCCATACTACTAATCTCATCAATACAACCCCCGCCCATCCTACCCAGCACACACACACCGCTGCTAACCCCATACCCCGAACCAACCAAACCCCAAAGACACCCCCCACAGTTTATGTAGCTTACCTCCTCAAAGCAATACACTGAAAATGTTTAGACGGGCTCACATCACCCCATAAACAAATAGGTTTGGTCCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGCAAGCATCCCCGTTCCAGTGAGTTCACCCTCTAAATCACCACGATCAAAAGGAACAAGCATCAAGCACGCAGCAATGCAGCTCAAAACGCTTAGCCTAGCCACACCCCCACGGGAAACAGCAGTGATTAACCTTTAGCAATAAACGAAAGTTTAACTAAGCTATACTAACCCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTCACACGATTAACCCAAGTCAATAGAAGCCGGCGTAAAGAGTGTTTTAGATCACCCCCTCCCCAATAAAGCTAAAACTCACCTGAGTTGTAAAAAACTCCAGTTGACACAAAATAGACTACGAAAGTGGCTTTAACATATCTGAACACACAATAGCTAAGACCCAAACTGGGATTAGATACCCCACTATGCTTAGCCCTAAACCTCAACAGTTAAATCAACAAAACTGCTCGCCAGAACACTACGAGCCACAGCTTAAAACTCAAAGGACCTGGCGGTGCTTCATATCCCTCTAGAGGAGCCTGTTCTGTAATCGATAAACCCCGATCAACCTCACCACCTCTTGCTCAGCCTATATACCGCCATCTTCAGCAAACCCTGATGAAGGCTACAAAGTAAGCGCAAGTACCCACGTAAAGACGTTAGGTCAAGGTGTAGCCCATGAGGTGGCAAGAAATGGGCTACATTTTCTACCCCAGAAAACTACGATAGCCCTTATGAAACTTAAGGGTCGAAGGTGGATTTAGCAGTAAACTAAGAGTAGAGTGCTTAGTTGAACAGGGCCCTGAAGCGCGTACACACCGCCCGTCACCCTCCTCAAGTATACTTCAAAGGACATTTAACTAAAACCCCTACGCATTTATATAGAGGAGACAAGTCGTAACATGGTAAGTGTACTGGAAAGTGCACTTGGACGAACCAGAGTGTAGCTTAACACAAAGCACCCAACTTACACTTAGGAGATTTCAACTTAACTTGACCGCTCTGAGCTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAATAAAGTATAGGCGATAGAAATTGAAACCTGGCGCAATAGATATAGTACCGCAAGGGAAAGATGAAAAATTATAACCAAGCATAATATAGCAAGGACTAACCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAGAGCCAAAGCTAAGACCCCCGAAACCAGACGAGCTACCTAAGAACAGCTAAAAGAGCACACCCGTCTATGTAGCAAAATAGTGGGAAGATTTATAGGTAGAGGCGACAAACCTACCGAGCCTGGTGATAGCTGGTTGTCCAAGATAGAATCTTAGTTCAACTTTAAATTTGCCCACAGAACCCTCTAAATCCCCTTGTAAATTTAACTGTTAGTCCAAAGAGGAACAGCTCTTTGGACACTAGGAAAAAACCTTGTAGAGAGAGTAAAAAATTTAACACCCATAGTAGGCCTAAAAGCAGCCACCAATTAAGAAAGCGTTCAAGCTCAACACCCACTACCTAAAAAATCCCAAACATATAACTGAACTCCTCACACCCAATTGGACCAATCTATCACCCTATAGAAGAACTAATGTTAGTATAAGTAACATGAAAACATTCTCCTCCGCATAAGCCTGCGTCAGATTAAAACACTGAACTGACAATTAACAGCCCAATATCTACAATCAACCAACAAGTCATTATTACCCTCACTGTCAACCCAACACAGGCATGCTCATAAGGAAAGGTTAAAAAAAGTAAAAGGAACTCGGCAAATCTTACCCCGCCTGTTTACCAAAAACATCACCTCTAGCATCACCAGTATTAGAGGCACCGCCTGCCCAGTGACACATGTTTAACGGCCGCGGTACCCTAACCGTGCAAAGGTAGCATAATCACTTGTTCCTTAAATAGGGACCTGTATGAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCCCGTGAAGAGGCGGGCATAACACAGCAAGACGAGAAGACCCTATGGAGCTTTAATTTATTAATGCAAACAGTACCTAACAAACCCACAGGTCCTAAACTACCAAACCTGCATTAAAAATTTCGGTTGGGGCGACCTCGGAGCAGAACCCAACCTCCGAGCAGTACATGCTAAGACTTCACCAGTCAAAGCGAACTACTATACTCAATTGATCCAATAACTTGACCAACGGAACAAGTTACCCTAGGGATAACAGCGCAATCCTATTCTAGAGTCCATATCAACAATAGGGTTTACGACCTCGATGTTGGATCAGGACATCCCGATGGTGCAGCCGCTATTAAAGGTTCGTTTGTTCAACGATTAAAGTCCTACGTGATCTGAGTTCAGACCGGAGTAATCCAGGTCGGTTTCTATCTACaTTCAAATTCCTCCCTGTACGAAAGGACAAGAGAAATAAGGCCTACTTCACAAAGCGCCTTCCCCCGTAAATGATATCATCTCAACTTAGTATTATACCCACACCCACCCAAGAACAGGGTTTGTTAAGATGGCAGAGCCCGGTAATCGCATAAAACTTAAAACTTTACAGTCAGAGGTTCAATTCCTCTTCTTAACAACATACCCATGGCCAACCTCCTACTCCTCATTGTACCCATTCTAATCGCAATGGCATTCCTAATGCTTACCGAACGAAAAATTCTAGGCTATATACAACTACGCAAAGGCCCCAACGTTGTAGGCCCCTACGGGCTACTACAACCCTTCGCTGACGCCATAAAACTCTTCACCAAAGAGCCCCTAAAACCCGCCACATCTACCATCACCCTCTACATCACCGCCCCGACCTTAGCTCTCACCATCGCTCTTCTACTATGAACCCCCCTCCCCATACCCAACCCCCTGGTCAACCTCAACCTAGGCCTCCTATTTATTCTAGCCACCTCTAGCCTAGCCGTTTACTCAATCCTCTGATCAGGGTGAGCATCAAACTCAAACTACGCCCTGATCGGCGCACTGCGAGCAGTAGCCCAAACAATCTCATATGAAGTCACCCTAGCCATCATTCTACTATCAACATTACTAATAAGTGGCTCCTTTAACCTCTCCACCCTTATCACAACACAAGAACACCTCTGATTACTCCTGCCATCATGACCCTTGGCCATAATATGATTTATCTCCACACTAGCAGAGACCAACCGAACCCCCTTCGACCTTGCCGAAGGGGAGTCCGAACTAGTCTCAGGCTTCAACATCGAATACGCCGCAGGCCCCTTCGCCCTATTCTTCATAGCCGAATACACAAACATTAT SN:Z:MT_human SO:i:0 SR:i:0
2
+ S MTh4001 TATAATAAACACCCTCACCACTACAATCTTCCTAGGAACAACATATGACGCACTCTCCCCTGAACTCTACACAACATATTTTGTCACCAAGACCCTACTTCTAACCTCCCTGTTCTTATGAATTCGAACAGCATACCCCCGATTCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTCACCCTAGCATTACTTATATGATATGTCTCCATACCCATTACAATCTCCAGCATTCCCCCTCAAACCTAAGAAATATGTCTGATAAAAGAGTTACTTTGATAGAGTAAATAATAGGAGCTTAAACCCCCTTATTTCTAGGACTATGAGAATCGAACCCATCCCTGAGAATCCAAAATTCTCCGTGCCACCTATCACACCCCATCCTAAAGTAAGGTCAGCTAAATAAGCTATCGGGCCCATACCCCGAAAATGTTGGTTATACCCTTCCCGTACTAATTAATCCCCTGGCCCAACCCGTCATCTACTCT SN:Z:MT_human SO:i:4001 SR:i:0
3
+ S MTo3426 GGGGTAAATGATGGGTTGGGCCAAGGGGTTAATTAGTACGGGAAGGGTATAACCAACATTTTCGGGGTATGGGCCCGATAGCTTATTTAGCTGACCTTACTTTAGGATAGGGTGTGATGGGTGGCACGGAGAATTTTGGATTCTCAGGGGTGGGTTCAACTCCCATAATCCTAGAAATAAGGGGATTTAGACCTCTATTTTTTACTCTATCAAAGTAACTCTTTTGTCAGACATATTTCTTAGGTTTGTGGGGGAATGCCGGAGGTTGCAATGGGTACGGAGATGTGTCATATTAGTAGTGCTAGGGTGAGTGGCAGGAAATTTTTTCATAGAAGGTGCATGAGTTGGTCGTAGCGGAATCGGGGGTATGTTGATCGAATTCATAGGAATAGGGAGGTTAGGAGTAGGGTTTTGATGGTGAAGAGGGTTGTGTAGAGTTCTGGGGAGTGGATGTTGAATGTTGTTCCTAGGAAAATTATAGTGGTGAGGGCGTTTATTAAG SN:Z:MT_orang SO:i:3426 SR:i:1
4
+ S MTh4502 ACCATCTTTGCAGGCACACTCATCACAGCGCTAAGCTCGCACTGATTTTTTACCTGAGTAGGCCTAGAAATAAACATGCTAGCTTTTATTCCAGTTCTAACCAAAAAAATAAACCCTCGTTCCACAGAAGCTGCCATCAAGTATTTCCTCACGCAAGCAACCGCATCCATAATCCTTCTAATAGCTATCCTCTTCAACAATATACTCTCCGGACAATGAACCATAACCAATACTACCAATCAATACTCATCATTAATAATCATAATAGCTATAGCAATAAAACTAGGAATAGCCCCCTTTCACTTCTGAGTCCCAGAGGTTACCCAAGGCACCCCTCTGACATCCGGCCTGCTTCTTCTCACATGACAAAAACTAGCCCCCATCTCAATCATATACCAAATCTCTCCCTCACTAAACGTAAGCCTTCTCCTCACTCTCTCAATCTTATCCATCATAGCAGGCAGTTGAGGTGGATTAAACCAAACCCAGCTACGCAAAATCTTAGCATACTCCTCAATTACCCACATAGGATGAATAATAGCAGTTCTACCGTACAACCCTAACATAACCATTCTTAATTTAACTATTTATATTATCCTAACTACTACCGCATTCCTACTACTCAACTTAAACTCCAGCACCACGACCCTACTACTATCTCGCACCTGAAACAAGCTAACATGACTAACACCCTTAATTCCATCCACCCTCCTCTCCCTAGGAGGCCTGCCCCCGCTAACCGGCTTTTTGCCCAAATGGGCCATTATCGAAGAATTCACAAAAAACAATAGCCTCATCATCCCCACCATCATAGCCACCATCACCCTCCTTAACCTCTACTTCTACCTACGCCTAATCTACTCCACCTCAATCACACTACTCCCCATATCTAACAACGTAAAAATAAAATGACAGTTTGAACATACAAAACCCACCCCATTCCTCCCCACACTCATCGCCCTTACCACGCTACTCCTACCTATCTCCCCTTTTATACTAATAATCTTATAGAAATTTAGGTTAAATACAGACCAAGAGCCTTCAAAGCCCTCAGTAAGTTGCAATACTTAATTTCTGTAACAGCTAAGGACTGCAAAACCCCACTCTGCATCAACTGAACGCAAATCAGCCACTTTAATTAAGCTAAGCCCTTACTAGACCAATGGGACTTAAACCCACAAACACTTAGTTAACAGCTAAGCACCCTAATCAACTGGCTTCAATCTACTTCTCCCGCCGCCGGGAAAAAAGGCGGGAGAAGCCCCGGCAGGTTTGAAGCTGCTTCTTCGAATTTGCAATTCAATATGAAAATCACCTCGGAGCTGGTAAAAAGAGGCCTAACCCCTGTCTTTAGATTTACAGTCCAATGCTTCACTCAGCCATTTTACCTCACCCCCACTGATGTTCGCCGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCGCATGAGCTGGAGTCCTAGGCACAGCTCTAAGCCTCCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACCACATCTACAACGTTATCGTCACAGCCCATGCATTTGTAATAATCTTCTTCATAGTAATACCCATCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCCCCGATATGGCGTTTCCCCGCATAAACAACATAAGCTTCTGACTCTTACCTCCCTCTCTCCTACTCCTGCTCGCATCTGCTATAGTGGAGGCCGGAGCAGGAACAGGTTGAACAGTCTACCCTCCCTTAGCAGGGAACTACTCCCACCCTGGAGCCTCCGTAGACCTAACCATCTTCTCCTTACACCTAGCAGGTGTCTCCTCTATCTTAGGGGCCATCAATTTCATCACAACAATTATCAATATAAAACCCCCTGCCATAACCCAATACCAAACGCCCCTCTTCGTCTGATCCGTCCTAATCACAGCAGTCCTACTTCTCCTATCTCTCCCAGTCCTAGCTGCTGGCATCACTATACTACTAACAGACCGCAACCTCAACACCACCTTCTTCGACCCCGCCGGAGGAGGAGACCCCATTCTATACCAACACCTATTCTGATTTTTCGGTCACCCTGAAGTTTATATTCTTATCCTACCAGGCTTCGGAATAATCTCCCATATTGTAACTTACTACTCCGGAAAAAAAGAACCATTTGGATACATAGGTATGGTCTGAGCTATGATATCAATTGGCTTCCTAGGGTTTATCGTGTGAGCACACCATATATTTACAGTAGGAATAGACGTAGACACACGAGCATATTTCACCTCCGCTACCATAATCATCGCTATCCCCACCGGCGTCAAAGTATTTAGCTGACTCGCCACACTCCACGGAAGCAATATGAAATGATCTGCTGCAGTGCTCTGAGCCCTAGGATTCATCTTTCTTTTCACCGTAGGTGGCCTGACTGGCATTGTATTAGCAAACTCATCACTAGACATCGTACTACACGACACGTACTACGTTGTAGCCCACTTCCACTATGTCCTATCAATAGGAGCTGTATTTGCCATCATAGGAGGCTTCATTCACTGATTTCCCCTATTCTCAGGCTACACCCTAGACCAAACCTACGCCAAAATCCATTTCACTATCATATTCATCGGCGTAAATCTAACTTTCTTCCCACAACACTTTCTCGGCCTATCCGGAATGCCCCGACGTTACTCGGACTACCCCGATGCATACACCACATGAAACATCCTATCATCTGTAGGCTCATTCATTTCTCTAACAGCAGTAATATTAATAATTTTCATGATTTGAGAAGCCTTCGCTTCGAAGCGAAAAGTCCTAATAGTAGAAGAACCCTCCATAAACCTGGAGTGACTATATGGATGCCCCCCACCCTACCACACATTCGAAGAACCCGTATACATAAAATCTAGACAAAAAAGGAAGGAATCGAACCCCCCAAAGCTGGTTTCAAGCCAACCCCATGGCCTCCATGACTTTTTCAAAAAGGTATTAGAAAAACCATTTCATAACTTTGTCAAAGTTAAATTATAGGCTAAATCCTATATATCTTAATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGATCACGCCCTCATAATCATTTTCCTTATCTGCTTCCTAGTCCTGTATGCCCTTTTCCTAACACTCACAACAAAACTAACTAATACTAACATCTCAGACGCTCAGGAAATAGAAACCGTCTGAACTATCCTGCCCGCCATCATCCTAGTCCTCATCGCCCTCCCATCCCTACGCATCCTTTACATAACAGACGAGGTCAACGATCCCTCCCTTACCATCAAATCAATTGGCCACCAATGGTACTGAACCTACGAGTACACCGACTACGGCGGACTAATCTTCAACTCCTACATACTTCCCCCATTATTCCTAGAACCAGGCGACCTGCGACTCCTTGACGTTGACAATCGAGTAGTACTCCCGATTGAAGCCCCCATTCGTATAATAATTACATCACAAGACGTCTTGCACTCATGAGCTGTCCCCACATTAGGCTTAAAAACAGATGCAATTCCCGGACGTCTAAACCAAACCACTTTCACCGCTACACGACCGGGGGTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATAGGGCCCGTATTTACCCTATAGCACCCCCTCTACCCCCTCTAGAGCCCACTGTAAAGCTAACTTAGCATTAACCTTTTAAGTTAAAGATTAAGAGAACCAACACCTCTTTACAGTGAAATGCCCCAACTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACTATTCCTCATCACCCAACTAAAAATATTAAACACAAACTACCACCTACCTCCCTCACCAAAGCCCATAAAAATAAAAAATTATAACAAACCCTGAGAACCAAAATGAACGAAAATCTGTTCGCTTCATTCATTGCCCCCACAATCCTAGGCCTACCCGCCGCAGTACTGATCATTCTATTTCCCCCTCTATTGATCCCCACCTCCAAATATCTCATCAACAACCGACTAATCACCACCCAACAATGACTAATCAAACTAACCTCAAAACAAATGATAACCATACACAACACTAAAGGACGAACCTGATCTCTTATACTAGTATCCTTAATCATTTTTATTGCCACAACTAACCTCCTCGGACTCCTGCCTCACTCATTTACACCAACCACCCAACTATCTATAAACCTAGCCATGGCCATCCCCTTATGAGCGGGCACAGTGATTATAGGCTTTCGCTCTAAGATTAAAAATGCCCTAGCCCACTTCTTACCACAAGGCACACCTACACCCCTTATCCCCATACTAGTTATTATCGAAACCATCAGCCTACTCATTCAACCAATAGCCCTGGCCGTACGCCTAACCGCTAACATTACTGCAGGCCACCTACTCATGCACCTAATTGGAAGCGCCACCCTAGCAATATCAACCATTAACCTTCCCTCTACACTTATCATCTTCACAATTCTAATTCTACTGACTATCCTAGAAATCGCTGTCGCCTTAATCCAAGCCTACGTTTTCACACTTCTAGTAAGCCTCTACCTGCACGACAACACATAATGACCCACCAATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAATGACCTCCGGCCTAGCCATGTGATTTCACTTCCACTCCATAACGCTCCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGATGGCGCGATGTAACACGAGAAAGCACATACCAAGGCCACCACACACCACCTGTCCAAAAAGGCCTTCGATACGGGATAATCCTATTTATTACCTCAGAAGTTTTTTTCTTCGCAGGATTTTTCTGAGC SN:Z:MT_human SO:i:4502 SR:i:0
5
+ S MTo8961 ATTCTACCACTCCAGCCTAGCCCCCACCCCTCAACTTGGAGGACACTGACCCCCAACAGGCATTATCCCCCTCAACCCCCTAGAAGTCCCACTCCTAAACACATCCGTACTACTCGCATCAGGAGTCTCAATTACCTGAGCCCATCACAGCCTGATGGAAAATAATCGAACCCAAATAATTCAAGCACTACTCATCACAATCTTACTAGGCATCTACTTCACTCTCCTTCAGGCTTCAGAATACATTGAAGCTCCTTTCACCATCTCTGACGGCATCTACGGCTCAACATTCTTCATAGCCACGGGATTCCACGGCCTCCACGTCATTATCGGATCAACTTTCCTCACTGTATGCCTAGCCCGCCAGCTATTATTCCACTTCACATCCAAACATCACTTTGGCTTTGAGGCCGCCGCCTGATACTGGCACTTTGTAGACGTAGTCTGACTGTTTCTGTACGTCTCCATCTACTGATGAGGTTCCTACTCTTTTAGTATAAAC SN:Z:MT_orang SO:i:8961 SR:i:1
6
+ S MTh9505 CTTTTACCACTCCAGCCTAGCCCCTACCCCCCAATTAGGAGGGCACTGGCCCCCAACAGGCATCACCCCGCTAAATCCCCTAGAAGTCCCACTCCTAAACACATCCGTATTACTCGCATCAGGAGTATCAATCACCTGAGCTCACCATAGTCTAATAGAAAACAACCGAAACCAAATAATTCAAGCACTGCTTATTACAATTTTACTGGGTCTCTATTTTACCCTCCTACAAGCCTCAGAGTACTTCGAGTCTCCCTTCACCATTTCCGACGGCATCTACGGCTCAACATTTTTTGTAGCCACAGGCTTCCACGGACTTCACGTCATTATTGGCTCAACTTTCCTCACTATCTGCTTCATCCGCCAACTAATATTTCACTTTACATCCAAACATCACTTTGGCTTCGAAGCCGCCGCCTGATACTGGCATTTTGTAGATGTGGTTTGACTATTTCTGTATGTCTCCATCTATTGATGAGGGTCTTACTCTTTTAGTATAAATAGTACCGTTAACTTCCAATTAACTAGTTTTGACAACATTCAAAAAAGAGTAATAAACTTCGCCTTAATTTTAATAATCAACACCCTCCTAGCCTTACTACTAATAATTATTACATTTTGACTACCACAACTCAACGGCTACATAGAAAAATCCACCCCTTACGAGTGCGGCTTCGACCCTATATCCCCCGCCCGCGTCCCTTTCTCCATAAAATTCTTCTTAGTAGCTATTACCTTCTTATTATTTGATCTAGAAATTGCCCTCCTTTTACCCCTACCATGAGCCCTACAAACAACTAACCTGCCACTAATAGTTATGTCATCCCTCTTATTAATCATCATCCTAGCCCTAAGTCTGGCCTATGAGTGACTACAAAAAGGATTAGACTGAACCGAATTGGTATATAGTTTAAACAAAACGAATGATTTCGACTCATTAAATTATGATAATCATATTTACCAAATGCCCCTCATTTACATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCTCATATCCTCCCTACTATGCCTAGAAGGAATAATACTATCGCTGTTCATTATAGCTACTCTCATAACCCTCAACACCCACTCCCTCTTAGCCAATATTGTGCCTATTGCCATACTAGTCTTTGCCGCCTGCGAAGCAGCGGTGGGCCTAGCCCTACTAGTCTCAATCTCCAACACATATGGCCTAGACTACGTACATAACCTAAACCTACTCCAATGCTAAAACTAATCGTCCCAACAATTATATTACTACCACTGACATGACTTTCCAAAAAACACATAATTTGAATCAACACAACCACCCACAGCCTAATTATTAGCATCATCCCTCTACTATTTTTTAACCAAATCAACAACAACCTATTTAGCTGTTCCCCAACCTTTTCCTCCGACCCCCTAACAACCCCCCTCCTAATACTAACTACCTGACTCCTACCCCTCACAATCATGGCAAGCCAACGCCACTTATCCAGTGAACCACTATCACGAAAAAAACTCTACCTCTCTATACTAATCTCCCTACAAATCTCCTTAATTATAACATTCACAGCCACAGAACTAATCATATTTTATATCTTCTTCGAAACCACACTTATCCCCACCTTGGCTATCATCACCCGATGAGGCAACCAGCCAGAACGCCTGAACGCAGGCACATACTTCCTATTCTACACCCTAGTAGGCTCCCTTCCCCTACTCATCGCACTAATTTACACTCACAACACCCTAGGCTCACTAAACATTCTACTACTCACTCTCACTGCCCAAGAACTATCAAACTCCTGAGCCAACAACTTAATATGACTAGCTTACACAATAGCTTTTATAGTAAAGATACCTCTTTACGGACTCCACTTATGACTCCCTAAAGCCCATGTCGAAGCCCCCATCGCTGGGTCAATAGTACTTGCCGCAGTACTCTTAAAACTAGGCGGCTATGGTATAATACGCCTCACACTCATTCTCAACCCCCTGACAAAACACATAGCCTACCCCTTCCTTGTACTATCCCTATGAGGCATAATTATAACAAGCTCCATCTGCCTACGACAAACAGACCTAAAATCGCTCATTGCATACTCTTCAATCAGCCACATAGCCCTCGTAGTAACAGCCATTCTCATCCAAACCCCCTGAAGCTTCACCGGCGCAGTCATTCTCATAATCGCCCACGGGCTTACATCCTCATTACTATTCTGCCTAGCAAACTCAAACTACGAACGCACTCACAGTCGCATCATAATCCTCTCTCAAGGACTTCAAACTCTACTCCCACTAATAGCTTTTTGATGACTTCTAGCAAGCCTCGCTAACCTCGCCTTACCCCCCACTATTAACCTACTGGGAGAACTCTCTGTGCTAGTAACCACGTTCTCCTGATCAAATATCACTCTCCTACTTACAGGACTCAACATACTAGTCACAGCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCACCCACCACATTAACAACATAAAACCCTCATTCACACGAGAAAACACCCTCATGTTCATACACCTATCCCCCATTCTCCTCCTATCCCTCAACCCCGACATCATTACCGGGTTTTCCTCTTGTAAATATAGTTTAACCAAAACATCAGATTGTGAATCTGACAACAGAGGCTTACGACCCCTTATTTACCGAGAAAGCTCACAAGAACTGCTAACTCATGCCCCCATGTCTAACAACATGGCTTTCTCAACTTTTAAAGGATAACAGCTATCCATTGGTCTTAGGCCCCAAAAATTTTGGTGCAACTCCAAATAAAAGTAATAACCATGCACACTACTATAACCACCCTAACCCTGACTTCCCTAATTCCCCCCATCCTTACCACCCTCGTTAACCCTAACAAAAAAAACTCATACCCCCATTATGTAAAATCCATTGTCGCATCCACCTTTATTATCAGTCTCTTCCCCACAACAATATTCATGTGCCTAGACCAAGAAGTTATTATCTCGAACTGACACTGAGCCACAACCCAAACAACCCAGCTCTCCCTAAGCTTCAAACTAGACTACTTCTCCATAATATTCATCCCTGTAGCATTGTTCGTTACATGGTCCATCATAGAATTCTCACTGTGATATATAAACTCAGACCCAAACATTAATCAGTTCTTCAAATATCTACTCATCTTCCTAATTACCATACTAATCTTAGTTACCGCTAACAACCTATTCCAACTGTTCATCGGCTGAGAGGGCGTAGGAATTATATCCTTCTTGCTCATCAGTTGATGATACGCCCGAGCAGATGCCAACACAGCAGCCATTCAAGCAATCCTATACAACCGTATCGGCGATATCGGTTTCATCCTCGCCTTAGCATGATTTATCCTACACTCCAACTCATGAGACCCACAACAAATAGCCCTTCTAAACGCTAATCCAAGCCTCACCCCACTACTAGGCCTCCTCCTAGCAGCAGCAGGCAAATCAGCCCAA SN:Z:MT_human SO:i:9505 SR:i:0
7
+ S MTh13014 TTAGGTCTCCACCCCTGACTCCCCTCAGCCATAGAAGGCCCCACCCCAGTCTCAGCCCTACTCCACTCAAGCACTATAGTTGTAGCAGGAATCTTCTTACTCATCCGCTTCCACCCCCTAGCAGAAAATAGCCCACTAATCCAAACTCTAACACTATGCTTAGGCGCTATCACCACTCTGTTCGCAGCAGTCTGCGCCCTTACACAAAATGACATCAAAAAAATCGTAGCCTTCTCCACTTCAAGTCAACTAGGACTCATAATAGTTACAATCGGCATCAACCAACCACACCTAGCATTCCTGCACATCTGTACCCACGCCTTCTTCAAAGCCATACTATTTATGTGCTCCGGGTCCATCATCCACAACCTTAACAATGAACAAGATATTCGAAAAATAGGAGGACTACTCAAAACCATACCTCTCACTTCAACCTCCCTCACCATTGGCAGCCTAGCATTAGCAGGAATACCTTTCCTCACAGGTTTCTACTCCAAAGACC SN:Z:MT_human SO:i:13014 SR:i:0
8
+ S MTh13516 ACATCATCGAAACCGCAAACATATCATACACAAACGCCTGAGCCCTATCTATTACTCTCATCGCTACCTCCCTGACAAGCGCCTATAGCACTCGAATAATTCTTCTCACCCTAACAGGTCAACCTCGCTTCCCCACCCTTACTAACATTAACGAAAATAACCCCACCCTACTAAACCCCATTAAACGCCTGGCAGCCGGAAGCCTATTCGCAGGATTTCTCATTACTAACAACATTTCCCCCGCATCCCCCTTCCAAACAACAATCCCCCTCTACCTAAAACTCACAGCCCTCGCTGTCACTTTCCTAGGACTTCTAACAGCCCTAGACCTCAACTACCTAACCAACAAACTTAAAATAAAATCCCCACTATGCACATTTTATTTCTCCAACATACTCGGATTCTACCCTAGCATCACACACCGCACAATCCCCTATCTAGGCCTTCTTACGAGCCAAAACCTGCCCCTACTCCTCCTAGACCTAACCTGACTAGAAAAGCTATTACCTAAAACAATTTCACAGCACCAAATCTCCACCTCCATCATCACCTCAACCCAAAAAGGCATAATTAAACTTTACTTCCTCTCTTTCTTCTTCCCACTCATCCTAACCCTACTCCTAATCACATAACCTATTCCCCCGAGCAATCTCAATTACAATATATACACCAACAAACAATGTTCAACCAGTAACTACTACTAATCAACGCCCATAATCATACAAAGCCCCCGCACCAATAGGATCCTCCCGAATCAACCCTGACCCCTCTCCTTCATAAATTATTCAGCTTCCTACACTATTAAAGTTTACCACAACCACCACCCCATCATACTCTTTCACCCACAGCACCAATCCTACCTCCATCGCTAACCCCACTAAAACACTCACCAAGACCTCAACCCCTGACCCCCATGCCTCAGGATACTCCTCAATAGCCATCGCTGTAGTATATCCAAAGACAACCATCATTCCCCCTAAATAAATTAAAAAAACTATTAAACCCATATAACCTCCCCCAAAATTCAGAATAATAACACACCCGACCACACCGCTAACAATCAATACTAAACCCCCATAAATAGGAGAAGGCTTAGAAGAAAACCCCACAAACCCCATTACTAAACCCACACTCAACAGAAACAAAGCATACATCATTATTCTCGCACGGACTACAACCACGACCAATGATATGAAAAACCATCGTTGTATTTCAACTACAAGAACACCAATGACCCCAATACGCAAAACTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCTCCCCACCCCATCCAACATCTCCGCATGATGAAACTTCGGCTCACTCCTTGGCGCCTGCCTGATCCTCCAAATCACCACAGGACTATTCCTAGCCATGCACTACTCACCAGACGCCTCAACCGCCTTTTCATCAATCGCCCACATCACTCGAGACGTAAATTATGGCTGAATCATCCGCTACCTTCACGCCAATGGCGCCTCAATATTCTTTATCTGCCTCTTCCTACACATCGGGCGAGGCCTATATTACGGATCATTTCTCTACTCAGAAACCTGAAACATCGGCATTATCCTCCTGCTTGCAACTATAGCAACAGCCTTCATAGGCTATGTCCTCCCGTGAGGCCAAATATCATTCTGAGGGGCCACAGTAATTACAAACTTACTATCCGCCATCCCATACATTGGGACAGACCTAGTTCAATGAATCTGAGGAGGCTACTCAGTAGACAGTCCCACCCTCACACGATTCTTTACCTTTCACTTCATCTTGCCCTTCATTATTGCAGCCCTAGCAACACTCCACCTCCTATTCTTGCACGAAACGGGATCAAACAACCCCCTAGGAATCACCTCCCATTCCGATAAAATCACCTTCCACCCTTACTACACAATCAAAGACGCCCTCGGCTTACTTCTCTTCCTTCTCTCCTTAATGACATTAACACTATTCTCACCAGACCTCCTAGGCGACCCAGACAATTATACCCTAGCCAACCCCTTAAACACCCCTCCCCACATCAAGCCCGAATGATATTTCCTATTCGCCTACACAATTCTCCGATCCGTCCCTAACAAACTAGGAGGCGTCCTTGCCCTATTACTATCCATCCTCATCCTAGCAATAATCCCCATCCTCCATATATCCAAACAACAAAGCATAATATTTCGCCCACTAAGCCAATCACTTTATTGACTCCTAGCCGCAGACCTCCTCATTCTAACCTGAATCGGAGGACAACCAGTAAGCTACCCTTTTACCATCATTGGACAAGTAGCATCCGTACTATACTTCACAACAATCCTAATCCTAATACCAACTATCTCCCTAATTGAAAACAAAATACTCAAATGGGCCTGTCCTTGTAGTATAAACTAATACACCAGTCTTGTAAACCGGAGATGAAAACCTTTTTCCAAGGACAAATCAGAGAAAAAGTCTTTAACTCCACCATTAGCACCCAAAGCTAAGATTCTAATTTAAACTATTCTCTGTTCTTTCATGGGGAAGCAGATTTGGGTACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTACATTACTGCCAGCCACCATGAATATTGTACGGTACCATAAATACTTGACCACCTGTAGTACATAAAAACCCAATCCACATCAAAACCCCCTCCCCATGCTTACAAGCAAGTACAGCAATCAACCCTCAACTATCACACATCAACTGCAACTCCAAAGCCACCCCTCACCCACTAGGATACCAACAAACCTACCCACCCTTAACAGTACATAGTACATAAAGCCATTTACCGTACATAGCACATTACAGTCAAATCCCTTCTCGTCCCCATGGATGACCCCCCTCAGATAGGGGTCCCTTGACCACCATCCTCCGTGAAATCAATATCCCGCACAAGAGTGCTACTCTCCTCGCTCCGGGCCCATAACACTTGGGGGTAGCTAAAGTGAACTGTATCCGACATCTGGTTCCTACTTCAGGGTCATAAAGCCTAAATAGCCCACACGTTCCCCTTAAATAAGACATCACGATG SN:Z:MT_human SO:i:13516 SR:i:0
9
+ L MTh0 + MTh4001 + 0M SR:i:0
10
+ L MTh4001 + MTh4502 + 0M SR:i:0
11
+ L MTh4001 + MTh4001 + 0M SR:i:1
12
+ L MTh4502 + MTh9505 + 0M SR:i:0
13
+ L MTh9505 + MTh13014 + 0M SR:i:0
14
+ L MTh13014 + MTh13516 + 0M SR:i:0
15
+ L MTh0 + MTo3426 - 0M SR:i:1
16
+ L MTo3426 - MTh4502 + 0M SR:i:1
17
+ L MTh4502 + MTo8961 + 0M SR:i:1
18
+ L MTo8961 + MTh9505 + 0M SR:i:1
19
+ L MTh9505 + MTh13516 + 0M SR:i:1
data/ext/minigraph/tex/Makefile ADDED
@@ -0,0 +1,13 @@
1
+ all:minigraph.pdf
2
+
3
+ minigraph.bbl:minigraph.bib minigraph.tex
4
+ pdflatex minigraph; bibtex minigraph
5
+
6
+ minigraph.pdf:minigraph.tex minigraph.bbl
7
+ pdflatex minigraph; pdflatex minigraph
8
+
9
+ lite:minigraph.tex
10
+ pdflatex minigraph
11
+
12
+ clean:
13
+ rm -f minigraph.bbl minigraph.log minigraph.aux