ruby-hl7 1.2.3 → 1.3.3

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Files changed (59) hide show
  1. checksums.yaml +5 -5
  2. data/.gitignore +7 -0
  3. data/.rubocop.yml +127 -0
  4. data/.travis.yml +20 -0
  5. data/Gemfile +3 -0
  6. data/Gemfile.lock +65 -0
  7. data/NOTES.md +151 -0
  8. data/README.rdoc +5 -0
  9. data/Rakefile +76 -0
  10. data/VERSION +1 -0
  11. data/VERSION.yml +4 -0
  12. data/examples/proxy_server.rb +26 -0
  13. data/lib/ruby-hl7.rb +1 -1
  14. data/lib/segments/ft1.rb +63 -0
  15. data/lib/segments/gt1.rb +75 -0
  16. data/lib/segments/pid.rb +13 -1
  17. data/lib/segments/txa.rb +28 -0
  18. data/ruby-hl7.gemspec +39 -0
  19. data/spec/ail_segment_spec.rb +28 -0
  20. data/spec/aip_segment_spec.rb +31 -0
  21. data/spec/basic_parsing_spec.rb +319 -0
  22. data/spec/batch_parsing_spec.rb +52 -0
  23. data/spec/child_segment_spec.rb +66 -0
  24. data/spec/core_ext/date_time_spec.rb +43 -0
  25. data/spec/default_segment_spec.rb +31 -0
  26. data/spec/dg1_spec.rb +42 -0
  27. data/spec/dynamic_segment_def_spec.rb +37 -0
  28. data/spec/err_segment_spec.rb +26 -0
  29. data/spec/evn_segment_spec.rb +23 -0
  30. data/spec/ft1_segment_spec.rb +35 -0
  31. data/spec/fts_segment_spec.rb +19 -0
  32. data/spec/gt1_segment_spec.rb +32 -0
  33. data/spec/in1_segment_spec.rb +34 -0
  34. data/spec/message_spec.rb +53 -0
  35. data/spec/messages_spec.rb +24 -0
  36. data/spec/mfe_segment_spec.rb +28 -0
  37. data/spec/mfi_segment_spec.rb +28 -0
  38. data/spec/msa_segment_spec.rb +27 -0
  39. data/spec/msh_segment_spec.rb +28 -0
  40. data/spec/nk1_segment_spec.rb +26 -0
  41. data/spec/obr_segment_spec.rb +45 -0
  42. data/spec/obx_segment_spec.rb +68 -0
  43. data/spec/orc_segment_spec.rb +27 -0
  44. data/spec/pid_segment_spec.rb +78 -0
  45. data/spec/prd_segment_spec.rb +29 -0
  46. data/spec/pv1_segment_spec.rb +23 -0
  47. data/spec/rf1_segment_spec.rb +29 -0
  48. data/spec/sch_segment_spec.rb +32 -0
  49. data/spec/segment_field_spec.rb +110 -0
  50. data/spec/segment_generator_spec.rb +32 -0
  51. data/spec/segment_list_storage_spec.rb +47 -0
  52. data/spec/segment_spec.rb +38 -0
  53. data/spec/sft_segment_spec.rb +26 -0
  54. data/spec/spec_helper.rb +13 -0
  55. data/spec/speed_parsing_spec.rb +19 -0
  56. data/spec/spm_segment_spec.rb +26 -0
  57. data/spec/txa_segment_spec.rb +72 -0
  58. metadata +155 -18
  59. data/lib/segments/zcf.rb +0 -22
@@ -0,0 +1,29 @@
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+ # encoding: UTF-8
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+ require 'spec_helper'
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+
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+ describe HL7::Message::Segment::PRD do
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+ context 'general' do
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+ let (:base) { 'PRD|RP|LastName^FirstName^MiddleInitial^SR^NickName|444 Home Street^Apt B^Ann Arbor^MI^99999^USA|^^^A Wonderful Clinic|^WPN^PH^^^07^5555555|PH|4796^AUSHICPR|20130109163307+1000|20140109163307+1000' }
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+ let (:prd) { HL7::Message::Segment::PRD.new base }
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+
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+ it 'should set the provider_role' do
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+ expect(prd.provider_role).to eql 'RP'
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+ end
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+
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+ it 'should set the name' do
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+ expect(prd.provider_name).to eql 'LastName^FirstName^MiddleInitial^SR^NickName'
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+ end
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+
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+ it 'should set the provider_address' do
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+ expect(prd.provider_address).to eql '444 Home Street^Apt B^Ann Arbor^MI^99999^USA'
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+ end
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+
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+ it 'should set the provider_location' do
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+ expect(prd.provider_location).to eql '^^^A Wonderful Clinic'
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+ end
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+
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+ it 'should set provider_communication_information' do
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+ expect(prd.provider_communication_information).to eql '^WPN^PH^^^07^5555555'
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+ end
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+ end
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+ end
@@ -0,0 +1,23 @@
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+ # encoding: UTF-8
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+ require 'spec_helper'
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+
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+ describe HL7::Message::Segment::PV1 do
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+ context 'general' do
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+ before :all do
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+ @base = "PV1||R|||||||||||||||A|||V02^19900607~H02^19900607"
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+ end
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+
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+ it 'allows access to an PV1 segment' do
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+ pv1 = HL7::Message::Segment::PV1.new @base
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+ expect(pv1.patient_class).to eq "R"
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+ end
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+
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+ it 'allows creation of an OBX segment' do
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+ pv1= HL7::Message::Segment::PV1.new
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+ pv1.referring_doctor="Smith^John"
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+ expect(pv1.referring_doctor).to eq "Smith^John"
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+ pv1.admit_date = Date.new(2014, 1, 1)
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+ expect(pv1.admit_date).to eq '20140101'
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+ end
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+ end
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+ end
@@ -0,0 +1,29 @@
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+ # encoding: UTF-8
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+ require 'spec_helper'
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+
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+ describe HL7::Message::Segment::RF1 do
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+ context 'general' do
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+ before :all do
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+ @base = 'RF1|P^Pending^HL70283|R^Routine^HL70280|GRF^General referral^HL70281|AM^Assume management^HL70282||8094|20060705||20060705||42'
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+
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+ end
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+
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+ it 'allows access to an RF1 segment' do
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+ rf1 = HL7::Message::Segment::RF1.new @base
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+ expect(rf1.referral_status).to eq 'P^Pending^HL70283'
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+ expect(rf1.referral_priority).to eq 'R^Routine^HL70280'
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+ expect(rf1.referral_type).to eq 'GRF^General referral^HL70281'
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+ expect(rf1.referral_disposition).to eq 'AM^Assume management^HL70282'
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+ expect(rf1.originating_referral_identifier).to eq '8094'
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+ expect(rf1.effective_date).to eq '20060705'
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+ expect(rf1.process_date).to eq '20060705'
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+ expect(rf1.external_referral_identifier).to eq '42'
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+ end
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+
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+ it 'allows creation of an RF1 segment' do
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+ rf1 = HL7::Message::Segment::RF1.new
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+ rf1.expiration_date=Date.new(2058, 12, 1)
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+ expect(rf1.expiration_date).to eq '20581201'
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+ end
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+ end
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+ end
@@ -0,0 +1,32 @@
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+ # encoding: UTF-8
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+ require 'spec_helper'
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+
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+ describe HL7::Message::Segment::SCH do
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+ context 'general' do
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+ before :all do
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+ @base_sch = 'SCH|||||681|S^SCHEDULED|^BONE DENSITY PB,cf/RH |30^30 MINUTE APPOINTMENT|45|m|^^45^200905260930^200905261015|||||||||polly^^POLLY BRESCOCK|^^^^^^ ||||SCHEDULED'
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+ end
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+
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+ it 'creates an SCH segment' do
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+ expect do
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+ sch = HL7::Message::Segment::SCH.new( @base_sch )
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+ expect(sch).not_to be_nil
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+ expect(sch.to_s).to eq @base_sch
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+ end.not_to raise_error
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+ end
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+
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+ it 'allows access to an SCH segment' do
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+ expect do
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+ sch = HL7::Message::Segment::SCH.new( @base_sch )
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+ expect(sch.schedule_id).to eq '681'
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+ expect(sch.event_reason).to eq 'S^SCHEDULED'
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+ expect(sch.appointment_reason).to eq '^BONE DENSITY PB,cf/RH '
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+ expect(sch.appointment_type).to eq '30^30 MINUTE APPOINTMENT'
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+ expect(sch.appointment_duration).to eq '45'
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+ expect(sch.appointment_duration_units).to eq 'm'
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+ expect(sch.entered_by_person).to eq 'polly^^POLLY BRESCOCK'
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+ expect(sch.filler_status_code).to eq 'SCHEDULED'
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+ end.not_to raise_error
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+ end
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+ end
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+ end
@@ -0,0 +1,110 @@
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+ # encoding: UTF-8
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+ require 'spec_helper'
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+
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+ class MockSegment < HL7::Message::Segment
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+ weight 1
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+ add_field :no_block
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+ alias_field :no_block_alias, :no_block
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+ add_field :validating do |value|
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+ value == "bad" ? nil : value
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+ end
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+ add_field :converting do |value|
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+ "X" + value
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+ end
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+ end
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+
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+ describe HL7::Message::Segment do
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+ before :all do
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+ @base = "Mock|no_block|validated|converted"
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+ end
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+
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+ context "block on field definitions" do
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+ it 'is evaluated on access by field name' do
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+ msg = MockSegment.new(@base)
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+
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+ expect(msg.to_s).to eq @base
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+ expect(msg.no_block).to eq "no_block"
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+ expect(msg.validating).to eq "validated"
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+ expect(msg.converting).to eq "Xconverted"
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+
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+ msg.no_block = "NO_BLOCK"
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+ expect(msg.no_block).to eq "NO_BLOCK"
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+
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+ msg.validating = "good"
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+ expect(msg.validating).to eq "good"
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+ msg.validating = "bad"
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+ expect(msg.validating).to eq ""
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+
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+ msg.converting = "empty"
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+ expect(msg.converting).to eq "XXempty"
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+ end
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+
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+ it 'is not evaluated on read access by eXXX alias' do
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+ msg = MockSegment.new(@base)
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+
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+ expect(msg.e1).to eq "no_block"
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+ expect(msg.e2).to eq "validated"
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+ expect(msg.e3).to eq "converted"
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+ end
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+
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+ it 'is not evaluated on write access by eXXX alias' do
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+ msg = MockSegment.new(@base)
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+
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+ msg.e1 = "NO_BLOCK"
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+ expect(msg.e1).to eq "NO_BLOCK"
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+
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+ msg.e2 = "good"
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+ expect(msg.e2).to eq "good"
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+ msg.e2 = "bad"
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+ expect(msg.e2).to eq "bad"
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+
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+ msg.e3 = "empty"
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+ expect(msg.e3).to eq "empty"
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+ end
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+ end
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+
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+ describe '#[]' do
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+ it 'allows index access to the segment' do
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+ msg = HL7::Message::Segment.new(@base)
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+ expect(msg[0]).to eq 'Mock'
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+ expect(msg[1]).to eq 'no_block'
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+ expect(msg[2]).to eq 'validated'
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+ expect(msg[3]).to eq 'converted'
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+ end
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+ end
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+
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+ describe '#[]=' do
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+ it 'allows index assignment to the segment' do
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+ msg = HL7::Message::Segment.new(@base)
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+ msg[0] = 'Kcom'
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+ expect(msg[0]).to eq 'Kcom'
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+ end
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+ end
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+
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+ describe '#alias_field' do
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+ context 'with a valid field' do
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+ it 'uses alias field names' do
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+ msg = MockSegment.new(@base)
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+ expect(msg.no_block).to eq "no_block"
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+ expect(msg.no_block_alias).to eq "no_block"
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+ end
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+ end
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+
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+ context 'with an invalid field' do
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+
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+ class MockInvalidSegment < HL7::Message::Segment
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+ weight 1
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+ add_field :no_block
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+ alias_field :no_block_alias, :invalid_field
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+ add_field :second
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+ add_field :third
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+ end
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+
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+
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+ it 'throws an error when the field is invalid' do
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+ msg = MockInvalidSegment.new(@base)
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+ expect{ msg.no_block_alias }.to raise_error(HL7::InvalidDataError)
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+ end
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+ end
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+ end
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+ end
@@ -0,0 +1,32 @@
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+ require 'spec_helper'
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+
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+ describe HL7::Message::SegmentGenerator do
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+ describe 'valid_segments_parts?' do
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+
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+ let(:element){ "MSH|1|2|3" }
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+ let(:delimiter){ HL7::Message::Delimiter.new('|', '^', '\r') }
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+ let(:segment_generator) do
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+ HL7::Message::SegmentGenerator.new(element, nil, delimiter)
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+ end
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+
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+ it "should return true if @seg_parts is an array of one element or more" do
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+ expect(segment_generator.valid_segments_parts?).to be true
14
+ end
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+
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+ context 'when is empty' do
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+ it "should return false if empty_segment_is_error is false" do
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+ segment_generator.seg_parts = nil
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+ HL7.ParserConfig[:empty_segment_is_error] = false
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+ expect(segment_generator.valid_segments_parts?).to be false
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+ end
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+
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+ it "should raise an error if empty_segment_is_error is true" do
24
+ HL7.ParserConfig[:empty_segment_is_error] = true
25
+ segment_generator.seg_parts = nil
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+ expect do
27
+ segment_generator.valid_segments_parts?
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+ end.to raise_error HL7::EmptySegmentNotAllowed
29
+ end
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+ end
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+ end
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+ end
@@ -0,0 +1,47 @@
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+ require 'spec_helper'
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+
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+ class SegmentNoChildren< HL7::Message::Segment
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+ end
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+
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+ class SegmentWithChildren < HL7::Message::Segment
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+ has_children [:NTE,:ORC,:SPM]
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+ end
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+
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+ describe HL7::Message::SegmentListStorage do
11
+ describe "self#add_child_type" do
12
+ it "should allow to add a new segment type as child" do
13
+ SegmentWithChildren.add_child_type :OBR
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+ segment = SegmentWithChildren.new
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+ expect(segment.accepts?(:OBR)).to be true
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+ expect(segment.child_types).to include :OBR
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+ end
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+ end
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+
20
+ describe "Adding children has_children and add_child_type" do
21
+ subject do
22
+ segment_instance = segment_class.new
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+ [:accepts?, :child_types, :children].each do |method|
24
+ expect(segment_instance.respond_to?(method)).to be true
25
+ end
26
+ end
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+
28
+ context "when child_types is not present" do
29
+ let(:segment_class){ SegmentNoChildren }
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+
31
+ it "by adding add_child_type should respond to the children methods" do
32
+ segment_instance = segment_class.new
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+ expect(segment_instance.respond_to?(:children)).to be false
34
+ segment_class.add_child_type(:OBR)
35
+ subject
36
+ end
37
+ end
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+
39
+ context "when child_types is present" do
40
+ let(:segment_class){ SegmentWithChildren }
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+
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+ it "should respond to the children methods" do
43
+ subject
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+ end
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+ end
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+ end
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+ end
@@ -0,0 +1,38 @@
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+ require 'spec_helper'
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+
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+ describe HL7::Message::Segment do
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+ describe 'length' do
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+
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+ it "should return the length of the elements" do
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+ segment = HL7::Message::Segment.new "MSA|AR|ZZ9380 ERR"
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+ expect(segment.length).to eq 3
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+ end
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+ end
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+
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+ describe 'enumerable' do
13
+ it 'enumerates over elements' do
14
+ seg = HL7::Message::Segment::Default.new
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+ segment_count = 0
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+ seg.each do |s|
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+ segment_count = segment_count + 1
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+ end
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+ expect(segment_count).to eq(seg.length)
20
+ end
21
+ end
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+
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+ describe 'is_child_segment?' do
24
+ let(:segment){ HL7::Message::Segment.new "MSA|AR|ZZ9380 ERR" }
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+ it "return false when is not set" do
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+ expect(segment.is_child_segment?).to be false
27
+ end
28
+ end
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+
30
+ describe 'convert_to_ts' do
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+ let(:time_now){ DateTime.now }
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+ let(:formated_time){ time_now.strftime('%Y%m%d%H%M%S') }
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+
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+ it "should conver to the hl7 time format" do
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+ expect(HL7::Message::Segment.convert_to_ts(time_now)).to eq formated_time
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+ end
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+ end
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+ end
@@ -0,0 +1,26 @@
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+ # encoding: UTF-8
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+ require 'spec_helper'
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+
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+ describe HL7::Message::Segment::SFT do
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+ context 'general' do
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+ before :all do
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+ @base_sft = 'SFT|Level Seven Healthcare Software, Inc.^L^^^^&2.16.840.1.113883.19.4.6^ISO^XX^^^1234|1.2|An Lab System|56734||20080817'
8
+ end
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+
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+ it 'creates an SFT segment' do
11
+ expect do
12
+ sft = HL7::Message::Segment::SFT.new( @base_sft )
13
+ expect(sft).not_to be_nil
14
+ expect(sft.to_s).to eq @base_sft
15
+ end.not_to raise_error
16
+ end
17
+
18
+ it 'allows access to an SFT segment' do
19
+ expect do
20
+ sft = HL7::Message::Segment::SFT.new( @base_sft )
21
+ expect(sft.software_product_name).to eq 'An Lab System'
22
+ expect(sft.software_install_date).to eq '20080817'
23
+ end.not_to raise_error
24
+ end
25
+ end
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+ end
@@ -0,0 +1,13 @@
1
+ require 'simplecov'
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+
3
+ if ENV["COVERAGE"]
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+ SimpleCov.start do
5
+ add_filter "/test/"
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+ add_filter "/spec/"
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+ end
8
+ end
9
+
10
+ # ruby-hl7 loads the rest of the files in lib
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+ require File.expand_path('../../lib/ruby-hl7', __FILE__)
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+ require File.expand_path('../../lib/test/hl7_messages', __FILE__)
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+ require 'pry'
@@ -0,0 +1,19 @@
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+ # encoding: UTF-8
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+ require 'spec_helper'
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+ require 'time'
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+
5
+ describe HL7::Message do
6
+ context 'speed parsing' do
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+ before :all do
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+ @msg = open( "./test_data/lotsunknowns.hl7" ).readlines
9
+ end
10
+
11
+ it 'parses large, unknown segments rapidly' do
12
+ start = Time.now
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+ doc = HL7::Message.new @msg
14
+ expect(doc).not_to be_nil
15
+ ends = Time.now
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+ expect(ends-start).to be < 1
17
+ end
18
+ end
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+ end
@@ -0,0 +1,26 @@
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+ # encoding: UTF-8
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+ require 'spec_helper'
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+
4
+ describe HL7::Message::Segment::SPM do
5
+ context 'general' do
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+ before :all do
7
+ @base_spm = 'SPM|1|23456&EHR&2.16.840.1.113883.19.3.2.3&ISO^9700122&Lab&2.16.840.1.113883.19.3.1.6&ISO||122554006^Capillary blood specimen^SCT^BLDC^Blood capillary^HL70070^20080131^2.5.1||HEPA^Ammonium heparin^HL70371^^^^2.5.1|CAP^Capillary Specimen^HL70488^^^^2.5.1|181395001^Venous structure of digit^SCT^^^^20080731|||P^Patient^HL60369^^^^2.5.1|50^uL&Micro Liter&UCUM&&&&1.6|||||200808151030-0700|200808151100-0700'
8
+ end
9
+
10
+ it 'creates an SPM segment' do
11
+ expect do
12
+ spm = HL7::Message::Segment::SPM.new( @base_spm )
13
+ expect(spm).not_to be_nil
14
+ expect(spm.to_s).to eq @base_spm
15
+ end.not_to raise_error
16
+ end
17
+
18
+ it 'allows access to an SPM segment' do
19
+ expect do
20
+ spm = HL7::Message::Segment::SPM.new( @base_spm )
21
+ expect(spm.specimen_type).to eq '122554006^Capillary blood specimen^SCT^BLDC^Blood capillary^HL70070^20080131^2.5.1'
22
+ expect(spm.set_id).to eq '1'
23
+ end.not_to raise_error
24
+ end
25
+ end
26
+ end
@@ -0,0 +1,72 @@
1
+ # encoding: UTF-8
2
+ require 'spec_helper'
3
+
4
+ describe HL7::Message::Segment::TXA do
5
+ let(:segment) do
6
+ "TXA|1|AR|AP|20220611113300|1^Name|20220611|2022061110||1^Creator|" \
7
+ "1^Author|1^Typer|A^V02^UID^TC|A^V01^UID^TC|01|02|file.txt|C|P|AV|ST||" \
8
+ "2022061110|DC|AR|FileName|202206111011"
9
+ end
10
+ let(:filled_txa) { HL7::Message::Segment::TXA.new segment }
11
+
12
+ it 'allows access to an TXA segment' do
13
+ expect(filled_txa.set_id).to eq('1')
14
+ expect(filled_txa.document_type).to eq('AR')
15
+ expect(filled_txa.document_content_presentation).to eq('AP')
16
+ expect(filled_txa.activity_date_time).to eq('20220611113300')
17
+ expect(filled_txa.primary_activity_provider_code).to eq('1^Name')
18
+ expect(filled_txa.origination_date_time).to eq('20220611')
19
+ expect(filled_txa.transcription_date_time).to eq('2022061110')
20
+ expect(filled_txa.edit_date_time).to eq('')
21
+ expect(filled_txa.originator_code).to eq('1^Creator')
22
+ expect(filled_txa.assigned_document_authenticator).to eq('1^Author')
23
+ expect(filled_txa.transcriptionist_code).to eq('1^Typer')
24
+ expect(filled_txa.unique_document_number).to eq('A^V02^UID^TC')
25
+ expect(filled_txa.parent_document_number).to eq('A^V01^UID^TC')
26
+ expect(filled_txa.placer_order_number).to eq('01')
27
+ expect(filled_txa.filler_order_number).to eq('02')
28
+ expect(filled_txa.unique_document_file_name).to eq('file.txt')
29
+ expect(filled_txa.document_completion_status).to eq('C')
30
+ expect(filled_txa.document_confidentiality_status).to eq('P')
31
+ expect(filled_txa.document_availability_status).to eq('AV')
32
+ expect(filled_txa.document_storage_status).to eq('ST')
33
+ expect(filled_txa.document_change_reason).to eq('')
34
+ expect(filled_txa.authentication_person_time_stamp).to eq('2022061110')
35
+ expect(filled_txa.distributed_copies_code).to eq('DC')
36
+ expect(filled_txa.folder_assignment).to eq('AR')
37
+ expect(filled_txa.document_title).to eq('FileName')
38
+ expect(filled_txa.agreed_due_date_time).to eq('202206111011')
39
+ end
40
+
41
+ it 'allows creation of an TXA segment' do
42
+ txa = HL7::Message::Segment::TXA.new
43
+ txa.set_id = '1'
44
+ txa.document_type = 'AR'
45
+ txa.document_content_presentation = 'AP'
46
+ txa.activity_date_time = '20220611113300'
47
+ txa.primary_activity_provider_code = '1^Name'
48
+ txa.origination_date_time = '20220611'
49
+ txa.transcription_date_time = '2022061110'
50
+ txa.edit_date_time = ''
51
+ txa.originator_code = '1^Creator'
52
+ txa.assigned_document_authenticator = '1^Author'
53
+ txa.transcriptionist_code = '1^Typer'
54
+ txa.unique_document_number = 'A^V02^UID^TC'
55
+ txa.parent_document_number = 'A^V01^UID^TC'
56
+ txa.placer_order_number = '01'
57
+ txa.filler_order_number = '02'
58
+ txa.unique_document_file_name = 'file.txt'
59
+ txa.document_completion_status = 'C'
60
+ txa.document_confidentiality_status = 'P'
61
+ txa.document_availability_status = 'AV'
62
+ txa.document_storage_status = 'ST'
63
+ txa.document_change_reason = ''
64
+ txa.authentication_person_time_stamp = '2022061110'
65
+ txa.distributed_copies_code = 'DC'
66
+ txa.folder_assignment = 'AR'
67
+ txa.document_title = 'FileName'
68
+ txa.agreed_due_date_time = '202206111011'
69
+
70
+ expect(txa.to_s).to eq(segment)
71
+ end
72
+ end