rtp-connect 1.6 → 1.7
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- checksums.yaml +15 -0
- data/{CHANGELOG.rdoc → CHANGELOG.md} +29 -14
- data/Gemfile.lock +27 -21
- data/{README.rdoc → README.md} +62 -50
- data/lib/rtp-connect.rb +1 -0
- data/lib/rtp-connect/constants.rb +1 -0
- data/lib/rtp-connect/control_point.rb +142 -100
- data/lib/rtp-connect/dose_tracking.rb +31 -36
- data/lib/rtp-connect/extended_field.rb +15 -51
- data/lib/rtp-connect/extended_plan.rb +133 -0
- data/lib/rtp-connect/field.rb +101 -128
- data/lib/rtp-connect/methods.rb +31 -16
- data/lib/rtp-connect/plan.rb +80 -98
- data/lib/rtp-connect/plan_to_dcm.rb +68 -106
- data/lib/rtp-connect/prescription.rb +18 -56
- data/lib/rtp-connect/record.rb +62 -1
- data/lib/rtp-connect/ruby_extensions.rb +34 -3
- data/lib/rtp-connect/simulation_field.rb +58 -136
- data/lib/rtp-connect/site_setup.rb +51 -62
- data/lib/rtp-connect/version.rb +1 -1
- data/rakefile.rb +0 -1
- data/rtp-connect.gemspec +7 -7
- metadata +51 -41
@@ -24,6 +24,9 @@ module RTP
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24
24
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attr_reader :couch_longitudinal
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25
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attr_reader :couch_angle
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26
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attr_reader :couch_pedestal
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27
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+
attr_reader :table_top_vert_displacement
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+
attr_reader :table_top_long_displacement
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+
attr_reader :table_top_lat_displacement
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# Creates a new SiteSetup by parsing a RTPConnect string line.
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#
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@@ -33,31 +36,8 @@ module RTP
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33
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# @raise [ArgumentError] if given a string containing an invalid number of elements
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34
37
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#
|
35
38
|
def self.load(string, parent)
|
36
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-
# Get the quote-less values:
|
37
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-
values = string.to_s.values
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38
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-
low_limit = 5
|
39
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-
high_limit = 16
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-
raise ArgumentError, "Invalid argument 'string': Expected at least #{low_limit} elements, got #{values.length}." if values.length < low_limit
|
41
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-
RTP.logger.warn "The number of elements (#{values.length}) for this SiteSetup record exceeds the known number of data items for this record (#{high_limit}). This may indicate an invalid record or that the RTP format has recently been expanded with new items." if values.length > high_limit
|
42
39
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s = self.new(parent)
|
43
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-
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44
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-
s.keyword = values[0]
|
45
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-
s.rx_site_name = values[1]
|
46
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-
s.patient_orientation = values[2]
|
47
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-
s.treatment_machine = values[3]
|
48
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-
s.tolerance_table = values[4]
|
49
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-
s.iso_pos_x = values[5]
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50
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-
s.iso_pos_y = values[6]
|
51
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-
s.iso_pos_z = values[7]
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-
s.structure_set_uid = values[8]
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53
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-
s.frame_of_ref_uid = values[9]
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-
s.couch_vertical = values[10]
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-
s.couch_lateral = values[11]
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-
s.couch_longitudinal = values[12]
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-
s.couch_angle = values[13]
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-
s.couch_pedestal = values[14]
|
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-
s.crc = values[-1]
|
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-
return s
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+
s.load(string)
|
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41
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end
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# Creates a new SiteSetup.
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@@ -65,10 +45,32 @@ module RTP
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65
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# @param [Record] parent a record which is used to determine the proper parent of this instance
|
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#
|
67
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def initialize(parent)
|
48
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+
super('SITE_SETUP_DEF', 5, 19)
|
68
49
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# Parent relation (always expecting a Prescription here):
|
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50
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@parent = get_parent(parent.to_prescription, Prescription)
|
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51
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@parent.add_site_setup(self)
|
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-
@
|
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+
@attributes = [
|
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+
# Required:
|
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+
:keyword,
|
55
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+
:rx_site_name,
|
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+
:patient_orientation,
|
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+
:treatment_machine,
|
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+
# Optional:
|
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+
:tolerance_table,
|
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+
:iso_pos_x,
|
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:iso_pos_y,
|
62
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+
:iso_pos_z,
|
63
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+
:structure_set_uid,
|
64
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:frame_of_ref_uid,
|
65
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+
:couch_vertical,
|
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+
:couch_lateral,
|
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+
:couch_longitudinal,
|
68
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+
:couch_angle,
|
69
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+
:couch_pedestal,
|
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+
:table_top_vert_displacement,
|
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:table_top_long_displacement,
|
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:table_top_lat_displacement
|
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+
]
|
72
74
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end
|
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# Checks for equality.
|
@@ -105,31 +107,6 @@ module RTP
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|
105
107
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state.hash
|
106
108
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end
|
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|
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-
# Collects the values (attributes) of this instance.
|
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-
#
|
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-
# @note The CRC is not considered part of the actual values and is excluded.
|
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-
# @return [Array<String>] an array of attributes (in the same order as they appear in the RTP string)
|
112
|
-
#
|
113
|
-
def values
|
114
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-
return [
|
115
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-
@keyword,
|
116
|
-
@rx_site_name,
|
117
|
-
@patient_orientation,
|
118
|
-
@treatment_machine,
|
119
|
-
@tolerance_table,
|
120
|
-
@iso_pos_x,
|
121
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-
@iso_pos_y,
|
122
|
-
@iso_pos_z,
|
123
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-
@structure_set_uid,
|
124
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-
@frame_of_ref_uid,
|
125
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-
@couch_vertical,
|
126
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-
@couch_lateral,
|
127
|
-
@couch_longitudinal,
|
128
|
-
@couch_angle,
|
129
|
-
@couch_pedestal
|
130
|
-
]
|
131
|
-
end
|
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-
|
133
110
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# Encodes the SiteSetup object + any hiearchy of child objects,
|
134
111
|
# to a properly formatted RTPConnect ascii string.
|
135
112
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#
|
@@ -155,18 +132,6 @@ module RTP
|
|
155
132
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self
|
156
133
|
end
|
157
134
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|
158
|
-
# Sets the keyword attribute.
|
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-
#
|
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# @note Since only a specific string is accepted, this is more of an argument check than a traditional setter method
|
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-
# @param [#to_s] value the new attribute value
|
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-
# @raise [ArgumentError] if given an unexpected keyword
|
163
|
-
#
|
164
|
-
def keyword=(value)
|
165
|
-
value = value.to_s.upcase
|
166
|
-
raise ArgumentError, "Invalid keyword. Expected 'SITE_SETUP_DEF', got #{value}." unless value == "SITE_SETUP_DEF"
|
167
|
-
@keyword = value
|
168
|
-
end
|
169
|
-
|
170
135
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# Sets the rx_site_name attribute.
|
171
136
|
#
|
172
137
|
# @param [nil, #to_s] value the new attribute value
|
@@ -279,6 +244,30 @@ module RTP
|
|
279
244
|
@couch_pedestal = value && value.to_s.strip
|
280
245
|
end
|
281
246
|
|
247
|
+
# Sets the table_top_vert_displacement attribute.
|
248
|
+
#
|
249
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+
# @param [nil, #to_s] value the new attribute value
|
250
|
+
#
|
251
|
+
def table_top_vert_displacement=(value)
|
252
|
+
@table_top_vert_displacement = value && value.to_s.strip
|
253
|
+
end
|
254
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+
|
255
|
+
# Sets the table_top_long_displacement attribute.
|
256
|
+
#
|
257
|
+
# @param [nil, #to_s] value the new attribute value
|
258
|
+
#
|
259
|
+
def table_top_long_displacement=(value)
|
260
|
+
@table_top_long_displacement = value && value.to_s.strip
|
261
|
+
end
|
262
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+
|
263
|
+
# Sets the table_top_lat_displacement attribute.
|
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|
+
#
|
265
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+
# @param [nil, #to_s] value the new attribute value
|
266
|
+
#
|
267
|
+
def table_top_lat_displacement=(value)
|
268
|
+
@table_top_lat_displacement = value && value.to_s.strip
|
269
|
+
end
|
270
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+
|
282
271
|
|
283
272
|
private
|
284
273
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|
data/lib/rtp-connect/version.rb
CHANGED
data/rakefile.rb
CHANGED
data/rtp-connect.gemspec
CHANGED
@@ -15,14 +15,14 @@ Gem::Specification.new do |s|
|
|
15
15
|
s.license = 'GPLv3'
|
16
16
|
s.description = 'RTPConnect is a file format used in radiotherapy for export & import of treatment planning data.'
|
17
17
|
s.files = Dir["{lib}/**/*", "[A-Z]*"]
|
18
|
-
s.rubyforge_project = 'rtp-connect'
|
19
18
|
|
20
19
|
s.required_ruby_version = '>= 1.9.3'
|
21
20
|
|
22
|
-
s.add_development_dependency('bundler', '~> 1.
|
23
|
-
s.add_development_dependency('dicom', '~> 0.9.
|
24
|
-
s.add_development_dependency('mocha', '~>
|
25
|
-
s.add_development_dependency('rake', '~>
|
26
|
-
s.add_development_dependency('
|
27
|
-
s.add_development_dependency('
|
21
|
+
s.add_development_dependency('bundler', '~> 1.6')
|
22
|
+
s.add_development_dependency('dicom', '~> 0.9', '>= 0.9.6')
|
23
|
+
s.add_development_dependency('mocha', '~> 1.1')
|
24
|
+
s.add_development_dependency('rake', '~> 10.3')
|
25
|
+
s.add_development_dependency('redcarpet', '~> 3.1')
|
26
|
+
s.add_development_dependency('rspec', '~> 3.0')
|
27
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+
s.add_development_dependency('yard', '~> 0.8', '>= 0.8.7')
|
28
28
|
end
|
metadata
CHANGED
@@ -1,112 +1,125 @@
|
|
1
1
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--- !ruby/object:Gem::Specification
|
2
2
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name: rtp-connect
|
3
3
|
version: !ruby/object:Gem::Version
|
4
|
-
version: '1.
|
5
|
-
prerelease:
|
4
|
+
version: '1.7'
|
6
5
|
platform: ruby
|
7
6
|
authors:
|
8
7
|
- Christoffer Lervag
|
9
8
|
autorequire:
|
10
9
|
bindir: bin
|
11
10
|
cert_chain: []
|
12
|
-
date:
|
11
|
+
date: 2014-09-17 00:00:00.000000000 Z
|
13
12
|
dependencies:
|
14
13
|
- !ruby/object:Gem::Dependency
|
15
14
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name: bundler
|
16
15
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requirement: !ruby/object:Gem::Requirement
|
17
|
-
none: false
|
18
16
|
requirements:
|
19
17
|
- - ~>
|
20
18
|
- !ruby/object:Gem::Version
|
21
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-
version: '1.
|
19
|
+
version: '1.6'
|
22
20
|
type: :development
|
23
21
|
prerelease: false
|
24
22
|
version_requirements: !ruby/object:Gem::Requirement
|
25
|
-
none: false
|
26
23
|
requirements:
|
27
24
|
- - ~>
|
28
25
|
- !ruby/object:Gem::Version
|
29
|
-
version: '1.
|
26
|
+
version: '1.6'
|
30
27
|
- !ruby/object:Gem::Dependency
|
31
28
|
name: dicom
|
32
29
|
requirement: !ruby/object:Gem::Requirement
|
33
|
-
none: false
|
34
30
|
requirements:
|
35
31
|
- - ~>
|
36
32
|
- !ruby/object:Gem::Version
|
37
|
-
version: 0.9
|
33
|
+
version: '0.9'
|
34
|
+
- - ! '>='
|
35
|
+
- !ruby/object:Gem::Version
|
36
|
+
version: 0.9.6
|
38
37
|
type: :development
|
39
38
|
prerelease: false
|
40
39
|
version_requirements: !ruby/object:Gem::Requirement
|
41
|
-
none: false
|
42
40
|
requirements:
|
43
41
|
- - ~>
|
44
42
|
- !ruby/object:Gem::Version
|
45
|
-
version: 0.9
|
43
|
+
version: '0.9'
|
44
|
+
- - ! '>='
|
45
|
+
- !ruby/object:Gem::Version
|
46
|
+
version: 0.9.6
|
46
47
|
- !ruby/object:Gem::Dependency
|
47
48
|
name: mocha
|
48
49
|
requirement: !ruby/object:Gem::Requirement
|
49
|
-
none: false
|
50
50
|
requirements:
|
51
51
|
- - ~>
|
52
52
|
- !ruby/object:Gem::Version
|
53
|
-
version: '
|
53
|
+
version: '1.1'
|
54
54
|
type: :development
|
55
55
|
prerelease: false
|
56
56
|
version_requirements: !ruby/object:Gem::Requirement
|
57
|
-
none: false
|
58
57
|
requirements:
|
59
58
|
- - ~>
|
60
59
|
- !ruby/object:Gem::Version
|
61
|
-
version: '
|
60
|
+
version: '1.1'
|
62
61
|
- !ruby/object:Gem::Dependency
|
63
62
|
name: rake
|
64
63
|
requirement: !ruby/object:Gem::Requirement
|
65
|
-
none: false
|
66
64
|
requirements:
|
67
65
|
- - ~>
|
68
66
|
- !ruby/object:Gem::Version
|
69
|
-
version:
|
67
|
+
version: '10.3'
|
70
68
|
type: :development
|
71
69
|
prerelease: false
|
72
70
|
version_requirements: !ruby/object:Gem::Requirement
|
73
|
-
none: false
|
74
71
|
requirements:
|
75
72
|
- - ~>
|
76
73
|
- !ruby/object:Gem::Version
|
77
|
-
version:
|
74
|
+
version: '10.3'
|
75
|
+
- !ruby/object:Gem::Dependency
|
76
|
+
name: redcarpet
|
77
|
+
requirement: !ruby/object:Gem::Requirement
|
78
|
+
requirements:
|
79
|
+
- - ~>
|
80
|
+
- !ruby/object:Gem::Version
|
81
|
+
version: '3.1'
|
82
|
+
type: :development
|
83
|
+
prerelease: false
|
84
|
+
version_requirements: !ruby/object:Gem::Requirement
|
85
|
+
requirements:
|
86
|
+
- - ~>
|
87
|
+
- !ruby/object:Gem::Version
|
88
|
+
version: '3.1'
|
78
89
|
- !ruby/object:Gem::Dependency
|
79
90
|
name: rspec
|
80
91
|
requirement: !ruby/object:Gem::Requirement
|
81
|
-
none: false
|
82
92
|
requirements:
|
83
93
|
- - ~>
|
84
94
|
- !ruby/object:Gem::Version
|
85
|
-
version: '
|
95
|
+
version: '3.0'
|
86
96
|
type: :development
|
87
97
|
prerelease: false
|
88
98
|
version_requirements: !ruby/object:Gem::Requirement
|
89
|
-
none: false
|
90
99
|
requirements:
|
91
100
|
- - ~>
|
92
101
|
- !ruby/object:Gem::Version
|
93
|
-
version: '
|
102
|
+
version: '3.0'
|
94
103
|
- !ruby/object:Gem::Dependency
|
95
104
|
name: yard
|
96
105
|
requirement: !ruby/object:Gem::Requirement
|
97
|
-
none: false
|
98
106
|
requirements:
|
99
107
|
- - ~>
|
100
108
|
- !ruby/object:Gem::Version
|
101
|
-
version: 0.8
|
109
|
+
version: '0.8'
|
110
|
+
- - ! '>='
|
111
|
+
- !ruby/object:Gem::Version
|
112
|
+
version: 0.8.7
|
102
113
|
type: :development
|
103
114
|
prerelease: false
|
104
115
|
version_requirements: !ruby/object:Gem::Requirement
|
105
|
-
none: false
|
106
116
|
requirements:
|
107
117
|
- - ~>
|
108
118
|
- !ruby/object:Gem::Version
|
109
|
-
version: 0.8
|
119
|
+
version: '0.8'
|
120
|
+
- - ! '>='
|
121
|
+
- !ruby/object:Gem::Version
|
122
|
+
version: 0.8.7
|
110
123
|
description: RTPConnect is a file format used in radiotherapy for export & import
|
111
124
|
of treatment planning data.
|
112
125
|
email: chris.lervag@gmail.com
|
@@ -114,10 +127,17 @@ executables: []
|
|
114
127
|
extensions: []
|
115
128
|
extra_rdoc_files: []
|
116
129
|
files:
|
130
|
+
- CHANGELOG.md
|
131
|
+
- COPYING
|
132
|
+
- Gemfile
|
133
|
+
- Gemfile.lock
|
134
|
+
- README.md
|
135
|
+
- lib/rtp-connect.rb
|
117
136
|
- lib/rtp-connect/constants.rb
|
118
137
|
- lib/rtp-connect/control_point.rb
|
119
138
|
- lib/rtp-connect/dose_tracking.rb
|
120
139
|
- lib/rtp-connect/extended_field.rb
|
140
|
+
- lib/rtp-connect/extended_plan.rb
|
121
141
|
- lib/rtp-connect/field.rb
|
122
142
|
- lib/rtp-connect/logging.rb
|
123
143
|
- lib/rtp-connect/methods.rb
|
@@ -130,41 +150,31 @@ files:
|
|
130
150
|
- lib/rtp-connect/site_setup.rb
|
131
151
|
- lib/rtp-connect/variables.rb
|
132
152
|
- lib/rtp-connect/version.rb
|
133
|
-
- lib/rtp-connect.rb
|
134
|
-
- CHANGELOG.rdoc
|
135
|
-
- COPYING
|
136
|
-
- Gemfile
|
137
|
-
- Gemfile.lock
|
138
153
|
- rakefile.rb
|
139
|
-
- README.rdoc
|
140
154
|
- rtp-connect.gemspec
|
141
155
|
homepage: https://github.com/dicom/rtp-connect
|
142
156
|
licenses:
|
143
157
|
- GPLv3
|
158
|
+
metadata: {}
|
144
159
|
post_install_message:
|
145
160
|
rdoc_options: []
|
146
161
|
require_paths:
|
147
162
|
- lib
|
148
163
|
required_ruby_version: !ruby/object:Gem::Requirement
|
149
|
-
none: false
|
150
164
|
requirements:
|
151
165
|
- - ! '>='
|
152
166
|
- !ruby/object:Gem::Version
|
153
167
|
version: 1.9.3
|
154
168
|
required_rubygems_version: !ruby/object:Gem::Requirement
|
155
|
-
none: false
|
156
169
|
requirements:
|
157
170
|
- - ! '>='
|
158
171
|
- !ruby/object:Gem::Version
|
159
172
|
version: '0'
|
160
|
-
segments:
|
161
|
-
- 0
|
162
|
-
hash: -111446803
|
163
173
|
requirements: []
|
164
|
-
rubyforge_project:
|
165
|
-
rubygems_version:
|
174
|
+
rubyforge_project:
|
175
|
+
rubygems_version: 2.3.0
|
166
176
|
signing_key:
|
167
|
-
specification_version:
|
177
|
+
specification_version: 4
|
168
178
|
summary: Library for handling RTPConnect files.
|
169
179
|
test_files: []
|
170
180
|
has_rdoc:
|