rtp-connect 1.6 → 1.11
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +7 -0
- data/{CHANGELOG.rdoc → CHANGELOG.md} +137 -90
- data/COPYING +674 -674
- data/Gemfile +2 -2
- data/Gemfile.lock +31 -21
- data/README.md +161 -0
- data/lib/rtp-connect.rb +1 -0
- data/lib/rtp-connect/constants.rb +58 -57
- data/lib/rtp-connect/control_point.rb +158 -118
- data/lib/rtp-connect/dose_tracking.rb +37 -54
- data/lib/rtp-connect/extended_field.rb +36 -69
- data/lib/rtp-connect/extended_plan.rb +127 -0
- data/lib/rtp-connect/field.rb +158 -143
- data/lib/rtp-connect/methods.rb +85 -62
- data/lib/rtp-connect/plan.rb +645 -636
- data/lib/rtp-connect/plan_to_dcm.rb +668 -694
- data/lib/rtp-connect/prescription.rb +57 -74
- data/lib/rtp-connect/record.rb +225 -57
- data/lib/rtp-connect/ruby_extensions.rb +34 -3
- data/lib/rtp-connect/simulation_field.rb +606 -701
- data/lib/rtp-connect/site_setup.rb +112 -80
- data/lib/rtp-connect/version.rb +5 -5
- data/rakefile.rb +0 -1
- data/rtp-connect.gemspec +27 -27
- metadata +67 -58
- data/README.rdoc +0 -136
@@ -9,7 +9,7 @@ module RTP
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class SiteSetup < Record
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# The Record which this instance belongs to.
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-
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attr_accessor :parent
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attr_reader :rx_site_name
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attr_reader :patient_orientation
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attr_reader :treatment_machine
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@@ -24,6 +24,15 @@ module RTP
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attr_reader :couch_longitudinal
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attr_reader :couch_angle
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attr_reader :couch_pedestal
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attr_reader :table_top_vert_displacement
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attr_reader :table_top_long_displacement
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attr_reader :table_top_lat_displacement
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attr_reader :mrl_coil_name
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attr_reader :mrl_coil_index
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attr_reader :couch_reference
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attr_reader :couch_reference_index
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attr_reader :respiratory_motion_compensation_technique
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attr_reader :respiratory_signal_source
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# Creates a new SiteSetup by parsing a RTPConnect string line.
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#
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@@ -33,31 +42,8 @@ module RTP
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# @raise [ArgumentError] if given a string containing an invalid number of elements
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#
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def self.load(string, parent)
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# Get the quote-less values:
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values = string.to_s.values
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low_limit = 5
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high_limit = 16
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raise ArgumentError, "Invalid argument 'string': Expected at least #{low_limit} elements, got #{values.length}." if values.length < low_limit
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RTP.logger.warn "The number of elements (#{values.length}) for this SiteSetup record exceeds the known number of data items for this record (#{high_limit}). This may indicate an invalid record or that the RTP format has recently been expanded with new items." if values.length > high_limit
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s = self.new(parent)
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-
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s.keyword = values[0]
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s.rx_site_name = values[1]
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s.patient_orientation = values[2]
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s.treatment_machine = values[3]
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s.tolerance_table = values[4]
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s.iso_pos_x = values[5]
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s.iso_pos_y = values[6]
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s.iso_pos_z = values[7]
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s.structure_set_uid = values[8]
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s.frame_of_ref_uid = values[9]
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s.couch_vertical = values[10]
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s.couch_lateral = values[11]
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s.couch_longitudinal = values[12]
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s.couch_angle = values[13]
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s.couch_pedestal = values[14]
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s.crc = values[-1]
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return s
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s.load(string)
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end
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# Creates a new SiteSetup.
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# @param [Record] parent a record which is used to determine the proper parent of this instance
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#
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def initialize(parent)
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super('SITE_SETUP_DEF', 5, 25)
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# Parent relation (always expecting a Prescription here):
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@parent = get_parent(parent.to_prescription, Prescription)
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@parent.add_site_setup(self)
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@
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@attributes = [
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# Required:
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:keyword,
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:rx_site_name,
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:patient_orientation,
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:treatment_machine,
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# Optional:
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:tolerance_table,
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:iso_pos_x,
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:iso_pos_y,
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:iso_pos_z,
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:structure_set_uid,
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:frame_of_ref_uid,
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:couch_vertical,
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:couch_lateral,
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:couch_longitudinal,
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:couch_angle,
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:couch_pedestal,
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:table_top_vert_displacement,
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:table_top_long_displacement,
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:table_top_lat_displacement,
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:mrl_coil_name,
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:mrl_coil_index,
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:couch_reference,
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:couch_reference_index,
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:respiratory_motion_compensation_technique,
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:respiratory_signal_source
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]
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end
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# Checks for equality.
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state.hash
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end
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# Collects the values (attributes) of this instance.
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#
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# @note The CRC is not considered part of the actual values and is excluded.
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# @return [Array<String>] an array of attributes (in the same order as they appear in the RTP string)
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#
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def values
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return [
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@keyword,
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@rx_site_name,
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@patient_orientation,
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@treatment_machine,
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@tolerance_table,
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@iso_pos_x,
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@iso_pos_y,
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@iso_pos_z,
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@structure_set_uid,
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@frame_of_ref_uid,
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@couch_vertical,
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@couch_lateral,
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@couch_longitudinal,
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@couch_angle,
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@couch_pedestal
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]
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end
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# Encodes the SiteSetup object + any hiearchy of child objects,
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# to a properly formatted RTPConnect ascii string.
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#
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# @return [String] an RTP string with a single or multiple lines/records
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#
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def to_s
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str = encode
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if children
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children.each do |child|
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str += child.to_s
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end
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end
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return str
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end
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alias :to_str :to_s
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# Returns self.
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#
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# @return [SiteSetup] self
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self
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end
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# Sets the keyword attribute.
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#
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# @note Since only a specific string is accepted, this is more of an argument check than a traditional setter method
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# @param [#to_s] value the new attribute value
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# @raise [ArgumentError] if given an unexpected keyword
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#
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def keyword=(value)
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value = value.to_s.upcase
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raise ArgumentError, "Invalid keyword. Expected 'SITE_SETUP_DEF', got #{value}." unless value == "SITE_SETUP_DEF"
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@keyword = value
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end
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# Sets the rx_site_name attribute.
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#
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# @param [nil, #to_s] value the new attribute value
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@couch_pedestal = value && value.to_s.strip
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end
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# Sets the table_top_vert_displacement attribute.
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#
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# @param [nil, #to_s] value the new attribute value
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#
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def table_top_vert_displacement=(value)
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@table_top_vert_displacement = value && value.to_s.strip
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end
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# Sets the table_top_long_displacement attribute.
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#
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# @param [nil, #to_s] value the new attribute value
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#
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def table_top_long_displacement=(value)
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@table_top_long_displacement = value && value.to_s.strip
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end
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# Sets the table_top_lat_displacement attribute.
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#
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# @param [nil, #to_s] value the new attribute value
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#
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def table_top_lat_displacement=(value)
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@table_top_lat_displacement = value && value.to_s.strip
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end
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# Sets the mrl_coil_name attribute.
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#
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# @param [nil, #to_s] value the new attribute value
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#
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def mrl_coil_name=(value)
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@mrl_coil_name = value && value.to_s.strip
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end
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# Sets the mrl_coil_index attribute.
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#
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# @param [nil, #to_s] value the new attribute value
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#
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def mrl_coil_index=(value)
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@mrl_coil_index = value && value.to_s.strip
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end
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# Sets the couch_reference attribute.
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#
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# @param [nil, #to_s] value the new attribute value
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#
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def couch_reference=(value)
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@couch_reference = value && value.to_s.strip
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end
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# Sets the couch_reference_index attribute.
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#
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# @param [nil, #to_s] value the new attribute value
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#
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def couch_reference_index=(value)
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@couch_reference_index = value && value.to_s.strip
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end
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# Sets the respiratory_motion_compensation_technique attribute.
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#
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# @param [nil, #to_s] value the new attribute value
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#
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def respiratory_motion_compensation_technique=(value)
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@respiratory_motion_compensation_technique = value && value.to_s.strip
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end
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# Sets the respiratory_signal_source attribute.
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#
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# @param [nil, #to_s] value the new attribute value
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#
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def respiratory_signal_source=(value)
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@respiratory_signal_source = value && value.to_s.strip
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end
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private
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data/lib/rtp-connect/version.rb
CHANGED
@@ -1,6 +1,6 @@
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module RTP
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# The RTPConnect library version string.
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VERSION = '1.
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module RTP
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# The RTPConnect library version string.
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VERSION = '1.11'
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end
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data/rakefile.rb
CHANGED
data/rtp-connect.gemspec
CHANGED
@@ -1,28 +1,28 @@
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# encoding: UTF-8
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require File.expand_path('../lib/rtp-connect/version', __FILE__)
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Gem::Specification.new do |s|
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s.platform = Gem::Platform::RUBY
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s.name = 'rtp-connect'
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s.version = RTP::VERSION
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s.date = Time.now
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s.summary = 'Library for handling RTPConnect files.'
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s.require_paths = ['lib']
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s.author = 'Christoffer Lervag'
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s.email = 'chris.lervag@gmail.com'
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s.homepage = 'https://github.com/dicom/rtp-connect'
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s.license = '
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s.description = 'RTPConnect is a file format used in radiotherapy for export & import of treatment planning data.'
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s.files = Dir["{lib}/**/*", "[A-Z]*"]
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s.add_development_dependency('
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s.add_development_dependency('
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s.add_development_dependency('
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s.add_development_dependency('
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s.add_development_dependency('rspec', '~>
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s.add_development_dependency('yard', '~> 0.
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# encoding: UTF-8
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require File.expand_path('../lib/rtp-connect/version', __FILE__)
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Gem::Specification.new do |s|
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s.platform = Gem::Platform::RUBY
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s.name = 'rtp-connect'
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s.version = RTP::VERSION
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s.date = Time.now
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s.summary = 'Library for handling RTPConnect files.'
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s.require_paths = ['lib']
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s.author = 'Christoffer Lervag'
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s.email = 'chris.lervag@gmail.com'
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s.homepage = 'https://github.com/dicom/rtp-connect'
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s.license = 'GPL-3.0'
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s.description = 'RTPConnect is a file format used in radiotherapy for export & import of treatment planning data.'
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s.files = Dir["{lib}/**/*", "[A-Z]*"]
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s.required_ruby_version = '>= 2.2'
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s.add_development_dependency('bundler', '~> 1.11')
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s.add_development_dependency('dicom', '~> 0.9', '>= 0.9.8')
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s.add_development_dependency('mocha', '~> 1.1')
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s.add_development_dependency('rake', '~> 12.3')
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s.add_development_dependency('redcarpet', '~> 3.4')
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s.add_development_dependency('rspec', '~> 3.7')
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s.add_development_dependency('yard', '~> 0.9', '>= 0.9.12')
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end
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metadata
CHANGED
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--- !ruby/object:Gem::Specification
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name: rtp-connect
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version: !ruby/object:Gem::Version
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version: '1.
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prerelease:
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version: '1.11'
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platform: ruby
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authors:
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- Christoffer Lervag
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autorequire:
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bindir: bin
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cert_chain: []
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date:
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date: 2020-09-10 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: bundler
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requirement: !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ~>
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- - "~>"
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- !ruby/object:Gem::Version
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version: '1.
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version: '1.11'
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type: :development
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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none: false
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requirements:
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-
- - ~>
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- - "~>"
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- !ruby/object:Gem::Version
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version: '1.
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version: '1.11'
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- !ruby/object:Gem::Dependency
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name: dicom
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requirement: !ruby/object:Gem::Requirement
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none: false
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requirements:
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35
|
-
- - ~>
|
31
|
+
- - "~>"
|
36
32
|
- !ruby/object:Gem::Version
|
37
|
-
version: 0.9
|
33
|
+
version: '0.9'
|
34
|
+
- - ">="
|
35
|
+
- !ruby/object:Gem::Version
|
36
|
+
version: 0.9.8
|
38
37
|
type: :development
|
39
38
|
prerelease: false
|
40
39
|
version_requirements: !ruby/object:Gem::Requirement
|
41
|
-
none: false
|
42
40
|
requirements:
|
43
|
-
- - ~>
|
41
|
+
- - "~>"
|
42
|
+
- !ruby/object:Gem::Version
|
43
|
+
version: '0.9'
|
44
|
+
- - ">="
|
44
45
|
- !ruby/object:Gem::Version
|
45
|
-
version: 0.9.
|
46
|
+
version: 0.9.8
|
46
47
|
- !ruby/object:Gem::Dependency
|
47
48
|
name: mocha
|
48
49
|
requirement: !ruby/object:Gem::Requirement
|
49
|
-
none: false
|
50
50
|
requirements:
|
51
|
-
- - ~>
|
51
|
+
- - "~>"
|
52
52
|
- !ruby/object:Gem::Version
|
53
|
-
version: '
|
53
|
+
version: '1.1'
|
54
54
|
type: :development
|
55
55
|
prerelease: false
|
56
56
|
version_requirements: !ruby/object:Gem::Requirement
|
57
|
-
none: false
|
58
57
|
requirements:
|
59
|
-
- - ~>
|
58
|
+
- - "~>"
|
60
59
|
- !ruby/object:Gem::Version
|
61
|
-
version: '
|
60
|
+
version: '1.1'
|
62
61
|
- !ruby/object:Gem::Dependency
|
63
62
|
name: rake
|
64
63
|
requirement: !ruby/object:Gem::Requirement
|
65
|
-
none: false
|
66
64
|
requirements:
|
67
|
-
- - ~>
|
65
|
+
- - "~>"
|
66
|
+
- !ruby/object:Gem::Version
|
67
|
+
version: '12.3'
|
68
|
+
type: :development
|
69
|
+
prerelease: false
|
70
|
+
version_requirements: !ruby/object:Gem::Requirement
|
71
|
+
requirements:
|
72
|
+
- - "~>"
|
73
|
+
- !ruby/object:Gem::Version
|
74
|
+
version: '12.3'
|
75
|
+
- !ruby/object:Gem::Dependency
|
76
|
+
name: redcarpet
|
77
|
+
requirement: !ruby/object:Gem::Requirement
|
78
|
+
requirements:
|
79
|
+
- - "~>"
|
68
80
|
- !ruby/object:Gem::Version
|
69
|
-
version:
|
81
|
+
version: '3.4'
|
70
82
|
type: :development
|
71
83
|
prerelease: false
|
72
84
|
version_requirements: !ruby/object:Gem::Requirement
|
73
|
-
none: false
|
74
85
|
requirements:
|
75
|
-
- - ~>
|
86
|
+
- - "~>"
|
76
87
|
- !ruby/object:Gem::Version
|
77
|
-
version:
|
88
|
+
version: '3.4'
|
78
89
|
- !ruby/object:Gem::Dependency
|
79
90
|
name: rspec
|
80
91
|
requirement: !ruby/object:Gem::Requirement
|
81
|
-
none: false
|
82
92
|
requirements:
|
83
|
-
- - ~>
|
93
|
+
- - "~>"
|
84
94
|
- !ruby/object:Gem::Version
|
85
|
-
version: '
|
95
|
+
version: '3.7'
|
86
96
|
type: :development
|
87
97
|
prerelease: false
|
88
98
|
version_requirements: !ruby/object:Gem::Requirement
|
89
|
-
none: false
|
90
99
|
requirements:
|
91
|
-
- - ~>
|
100
|
+
- - "~>"
|
92
101
|
- !ruby/object:Gem::Version
|
93
|
-
version: '
|
102
|
+
version: '3.7'
|
94
103
|
- !ruby/object:Gem::Dependency
|
95
104
|
name: yard
|
96
105
|
requirement: !ruby/object:Gem::Requirement
|
97
|
-
none: false
|
98
106
|
requirements:
|
99
|
-
- - ~>
|
107
|
+
- - "~>"
|
100
108
|
- !ruby/object:Gem::Version
|
101
|
-
version: 0.
|
109
|
+
version: '0.9'
|
110
|
+
- - ">="
|
111
|
+
- !ruby/object:Gem::Version
|
112
|
+
version: 0.9.12
|
102
113
|
type: :development
|
103
114
|
prerelease: false
|
104
115
|
version_requirements: !ruby/object:Gem::Requirement
|
105
|
-
none: false
|
106
116
|
requirements:
|
107
|
-
- - ~>
|
117
|
+
- - "~>"
|
118
|
+
- !ruby/object:Gem::Version
|
119
|
+
version: '0.9'
|
120
|
+
- - ">="
|
108
121
|
- !ruby/object:Gem::Version
|
109
|
-
version: 0.
|
122
|
+
version: 0.9.12
|
110
123
|
description: RTPConnect is a file format used in radiotherapy for export & import
|
111
124
|
of treatment planning data.
|
112
125
|
email: chris.lervag@gmail.com
|
@@ -114,10 +127,17 @@ executables: []
|
|
114
127
|
extensions: []
|
115
128
|
extra_rdoc_files: []
|
116
129
|
files:
|
130
|
+
- CHANGELOG.md
|
131
|
+
- COPYING
|
132
|
+
- Gemfile
|
133
|
+
- Gemfile.lock
|
134
|
+
- README.md
|
135
|
+
- lib/rtp-connect.rb
|
117
136
|
- lib/rtp-connect/constants.rb
|
118
137
|
- lib/rtp-connect/control_point.rb
|
119
138
|
- lib/rtp-connect/dose_tracking.rb
|
120
139
|
- lib/rtp-connect/extended_field.rb
|
140
|
+
- lib/rtp-connect/extended_plan.rb
|
121
141
|
- lib/rtp-connect/field.rb
|
122
142
|
- lib/rtp-connect/logging.rb
|
123
143
|
- lib/rtp-connect/methods.rb
|
@@ -130,41 +150,30 @@ files:
|
|
130
150
|
- lib/rtp-connect/site_setup.rb
|
131
151
|
- lib/rtp-connect/variables.rb
|
132
152
|
- lib/rtp-connect/version.rb
|
133
|
-
- lib/rtp-connect.rb
|
134
|
-
- CHANGELOG.rdoc
|
135
|
-
- COPYING
|
136
|
-
- Gemfile
|
137
|
-
- Gemfile.lock
|
138
153
|
- rakefile.rb
|
139
|
-
- README.rdoc
|
140
154
|
- rtp-connect.gemspec
|
141
155
|
homepage: https://github.com/dicom/rtp-connect
|
142
156
|
licenses:
|
143
|
-
-
|
157
|
+
- GPL-3.0
|
158
|
+
metadata: {}
|
144
159
|
post_install_message:
|
145
160
|
rdoc_options: []
|
146
161
|
require_paths:
|
147
162
|
- lib
|
148
163
|
required_ruby_version: !ruby/object:Gem::Requirement
|
149
|
-
none: false
|
150
164
|
requirements:
|
151
|
-
- -
|
165
|
+
- - ">="
|
152
166
|
- !ruby/object:Gem::Version
|
153
|
-
version:
|
167
|
+
version: '2.2'
|
154
168
|
required_rubygems_version: !ruby/object:Gem::Requirement
|
155
|
-
none: false
|
156
169
|
requirements:
|
157
|
-
- -
|
170
|
+
- - ">="
|
158
171
|
- !ruby/object:Gem::Version
|
159
172
|
version: '0'
|
160
|
-
segments:
|
161
|
-
- 0
|
162
|
-
hash: -111446803
|
163
173
|
requirements: []
|
164
|
-
rubyforge_project:
|
165
|
-
rubygems_version:
|
174
|
+
rubyforge_project:
|
175
|
+
rubygems_version: 2.6.8
|
166
176
|
signing_key:
|
167
|
-
specification_version:
|
177
|
+
specification_version: 4
|
168
178
|
summary: Library for handling RTPConnect files.
|
169
179
|
test_files: []
|
170
|
-
has_rdoc:
|