rtp-connect 1.1 → 1.2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- data/CHANGELOG.rdoc +30 -19
- data/COPYING +674 -674
- data/Gemfile +3 -0
- data/Gemfile.lock +35 -0
- data/README.rdoc +12 -6
- data/lib/rtp-connect.rb +24 -22
- data/lib/rtp-connect/constants.rb +57 -57
- data/lib/rtp-connect/control_point.rb +176 -86
- data/lib/rtp-connect/dose_tracking.rb +222 -0
- data/lib/rtp-connect/extended_field.rb +56 -26
- data/lib/rtp-connect/field.rb +163 -43
- data/lib/rtp-connect/logging.rb +155 -158
- data/lib/rtp-connect/methods.rb +3 -4
- data/lib/rtp-connect/plan.rb +136 -52
- data/lib/rtp-connect/plan_to_dcm.rb +503 -0
- data/lib/rtp-connect/prescription.rb +71 -23
- data/lib/rtp-connect/record.rb +18 -2
- data/lib/rtp-connect/ruby_extensions.rb +90 -81
- data/lib/rtp-connect/site_setup.rb +78 -28
- data/lib/rtp-connect/version.rb +5 -5
- data/rakefile.rb +29 -0
- data/rtp-connect.gemspec +29 -0
- metadata +105 -53
@@ -2,10 +2,9 @@ module RTP
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# The SiteSetup class.
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#
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#
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#
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# * Children: none
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# @note Relations:
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# * Parent: Prescription
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# * Children: none
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#
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class SiteSetup < Record
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@@ -26,12 +25,12 @@ module RTP
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attr_reader :couch_angle
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attr_reader :couch_pedestal
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# Creates a new SiteSetup
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#
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# === Parameters
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# Creates a new SiteSetup by parsing a RTPConnect string line.
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#
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#
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#
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# @param [#to_s] string the site setup definition record string line
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# @param [Record] parent a record which is used to determine the proper parent of this instance
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# @return [SiteSetup] the created SiteSetup instance
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# @raise [ArgumentError] if given a string containing an invalid number of elements
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#
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def self.load(string, parent)
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# Get the quote-less values:
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@@ -60,9 +59,7 @@ module RTP
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# Creates a new SiteSetup.
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#
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#
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#
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# * <tt>parent</tt> -- A Record which is used to determine the proper parent of this instance.
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# @param [Record] parent a record which is used to determine the proper parent of this instance
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#
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def initialize(parent)
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# Parent relation (always expecting a Prescription here):
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@keyword = 'SITE_SETUP_DEF'
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end
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#
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# Checks for equality.
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#
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# Other and self are considered equivalent if they are
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# of compatible types and their attributes are equivalent.
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#
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# @param other an object to be compared with self.
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# @return [Boolean] true if self and other are considered equivalent
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#
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def ==(other)
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if other.respond_to?(:to_site_setup)
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alias_method :eql?, :==
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#
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# Gives an empty array, as these instances are child-less by definition.
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#
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# @return [Array] an emtpy array
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#
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def children
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return Array.new
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end
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#
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# Computes a hash code for this object.
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#
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# @note Two objects with the same attributes will have the same hash code.
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#
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# @return [Fixnum] the object's hash code
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#
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def hash
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state.hash
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end
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#
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#
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# Collects the values (attributes) of this instance.
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#
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# @note The CRC is not considered part of the actual values and is excluded.
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# @return [Array<String>] an array of attributes (in the same order as they appear in the RTP string)
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#
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def values
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return [
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]
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end
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#
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# Encodes the SiteSetup object + any hiearchy of child objects,
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# to a properly formatted RTPConnect ascii string.
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#
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# @return [String] an RTP string with a single or multiple lines/records
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#
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def to_s
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str = encode
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if children
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# Returns self.
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#
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# @return [SiteSetup] self
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#
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def to_site_setup
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self
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end
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# Sets the keyword attribute.
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#
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# @note Since only a specific string is accepted, this is more of an argument check than a traditional setter method
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# @param [#to_s] value the new attribute value
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# @raise [ArgumentError] if given an unexpected keyword
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#
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def keyword=(value)
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value = value.to_s.upcase
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raise ArgumentError, "Invalid keyword. Expected 'SITE_SETUP_DEF', got #{value}." unless value == "SITE_SETUP_DEF"
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# Sets the rx_site_name attribute.
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#
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# @param [nil, #to_s] value the new attribute value
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#
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def rx_site_name=(value)
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@rx_site_name = value && value.to_s
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end
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# Sets the patient_orientation attribute.
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#
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# @param [nil, #to_s] value the new attribute value
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#
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def patient_orientation=(value)
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@patient_orientation = value && value.to_s
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end
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# Sets the treatment_machine attribute.
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#
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# @param [nil, #to_s] value the new attribute value
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#
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def treatment_machine=(value)
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@treatment_machine = value && value.to_s
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end
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# Sets the tolerance_table attribute.
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#
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# @param [nil, #to_s] value the new attribute value
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#
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def tolerance_table=(value)
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@tolerance_table = value && value.to_s
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@tolerance_table = value && value.to_s.strip
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end
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# Sets the iso_pos_x attribute.
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#
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# @param [nil, #to_s] value the new attribute value
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#
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def iso_pos_x=(value)
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@iso_pos_x = value && value.to_s
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@iso_pos_x = value && value.to_s.strip
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end
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# Sets the iso_pos_y attribute.
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#
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# @param [nil, #to_s] value the new attribute value
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#
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def iso_pos_y=(value)
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@iso_pos_y = value && value.to_s
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@iso_pos_y = value && value.to_s.strip
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end
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# Sets the iso_pos_z attribute.
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#
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# @param [nil, #to_s] value the new attribute value
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#
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def iso_pos_z=(value)
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@iso_pos_z = value && value.to_s
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@iso_pos_z = value && value.to_s.strip
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end
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# Sets the structure_set_uid attribute.
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#
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# @param [nil, #to_s] value the new attribute value
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#
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def structure_set_uid=(value)
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@structure_set_uid = value && value.to_s
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end
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# Sets the frame_of_ref_uid attribute.
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#
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# @param [nil, #to_s] value the new attribute value
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#
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def frame_of_ref_uid=(value)
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@frame_of_ref_uid = value && value.to_s
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end
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# Sets the couch_vertical attribute.
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#
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# @param [nil, #to_s] value the new attribute value
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#
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def couch_vertical=(value)
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@couch_vertical = value && value.to_s
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@couch_vertical = value && value.to_s.strip
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end
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# Sets the couch_lateral attribute.
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#
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# @param [nil, #to_s] value the new attribute value
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#
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def couch_lateral=(value)
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@couch_lateral = value && value.to_s
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@couch_lateral = value && value.to_s.strip
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end
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# Sets the couch_longitudinal attribute.
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#
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# @param [nil, #to_s] value the new attribute value
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#
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def couch_longitudinal=(value)
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@couch_longitudinal = value && value.to_s
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@couch_longitudinal = value && value.to_s.strip
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end
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# Sets the couch_angle attribute.
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#
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# @param [nil, #to_s] value the new attribute value
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#
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def couch_angle=(value)
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@couch_angle = value && value.to_s
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@couch_angle = value && value.to_s.strip
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end
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# Sets the couch_pedestal attribute.
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#
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# @param [nil, #to_s] value the new attribute value
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#
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def couch_pedestal=(value)
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@couch_pedestal = value && value.to_s
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@couch_pedestal = value && value.to_s.strip
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end
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private
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#
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# Collects the attributes of this instance.
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#
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# @note The CRC is not considered part of the attributes of interest and is excluded
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# @return [Array<String>] an array of attributes
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#
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alias_method :state, :values
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data/lib/rtp-connect/version.rb
CHANGED
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module RTP
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# The RTPConnect library version string.
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VERSION = "1.
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module RTP
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# The RTPConnect library version string.
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VERSION = "1.2"
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end
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data/rakefile.rb
ADDED
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# Available commands:
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# Testing the specification:
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# bundle exec rake spec
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# Building a gem package from source:
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# bundle exec rake package
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# Create html documentation files:
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# bundle exec rake yard
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require 'rubygems/package_task'
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require 'rspec/core/rake_task'
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require 'yard'
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# Build gem:
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gem_spec = eval(File.read('rtp-connect.gemspec'))
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Gem::PackageTask.new(gem_spec) do |pkg|
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pkg.gem_spec = gem_spec
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#pkg.need_tar = true
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end
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# RSpec 2:
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RSpec::Core::RakeTask.new do |t|
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t.rspec_opts = ["-c", "-f progress", "-r ./spec/spec_helper.rb"]
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t.pattern = 'spec/**/*_spec.rb'
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end
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# Build documentation (YARD):
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YARD::Rake::YardocTask.new do |t|
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t.options += ['--title', "RTP-Connect #{RTP::VERSION} Documentation"]
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end
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data/rtp-connect.gemspec
ADDED
@@ -0,0 +1,29 @@
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# encoding: UTF-8
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require File.expand_path('../lib/rtp-connect/version', __FILE__)
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Gem::Specification.new do |s|
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s.platform = Gem::Platform::RUBY
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s.name = 'rtp-connect'
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s.version = RTP::VERSION
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s.date = Time.now
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s.summary = "Library for handling RTPConnect files."
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s.require_paths = ['lib']
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s.author = "Christoffer Lervag"
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s.email = "chris.lervag@gmail.com"
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s.homepage = "https://github.com/dicom/rtp-connect"
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s.license = "GPLv3"
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s.description = "RTPConnect is a file format used in radiotherapy for export & import of treatment planning data."
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s.files = Dir["{lib}/**/*", "[A-Z]*"]
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s.rubyforge_project = 'rtp-connect'
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s.required_ruby_version = '>= 1.9.2'
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s.required_rubygems_version = '>= 1.8.6'
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s.add_development_dependency('bundler', '>= 1.0.0')
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s.add_development_dependency('dicom', '>= 0.9.3')
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s.add_development_dependency('rake', '>= 0.9.2.2')
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s.add_development_dependency('rspec', '>= 2.9.0')
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s.add_development_dependency('mocha', '>= 0.10.5')
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s.add_development_dependency('yard', '>= 0.8.2')
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end
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metadata
CHANGED
@@ -1,77 +1,128 @@
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-
--- !ruby/object:Gem::Specification
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--- !ruby/object:Gem::Specification
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name: rtp-connect
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version: !ruby/object:Gem::Version
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version: !ruby/object:Gem::Version
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version: '1.2'
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prerelease:
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version: "1.1"
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platform: ruby
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authors:
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authors:
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- Christoffer Lervag
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autorequire:
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bindir: bin
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cert_chain: []
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-
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-
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-
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- !ruby/object:Gem::Dependency
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date: 2012-07-13 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: bundler
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requirement: !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ! '>='
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- !ruby/object:Gem::Version
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version: 1.0.0
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type: :development
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prerelease: false
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-
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version_requirements: !ruby/object:Gem::Requirement
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none: false
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requirements:
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-
- -
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- !ruby/object:Gem::Version
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requirements:
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- - ! '>='
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- !ruby/object:Gem::Version
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version: 1.0.0
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- !ruby/object:Gem::Dependency
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name: dicom
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32
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+
requirement: !ruby/object:Gem::Requirement
|
33
|
+
none: false
|
34
|
+
requirements:
|
35
|
+
- - ! '>='
|
36
|
+
- !ruby/object:Gem::Version
|
37
|
+
version: 0.9.3
|
24
38
|
type: :development
|
25
|
-
version_requirements: *id001
|
26
|
-
- !ruby/object:Gem::Dependency
|
27
|
-
name: rake
|
28
39
|
prerelease: false
|
29
|
-
|
40
|
+
version_requirements: !ruby/object:Gem::Requirement
|
30
41
|
none: false
|
31
|
-
requirements:
|
32
|
-
- -
|
33
|
-
- !ruby/object:Gem::Version
|
42
|
+
requirements:
|
43
|
+
- - ! '>='
|
44
|
+
- !ruby/object:Gem::Version
|
45
|
+
version: 0.9.3
|
46
|
+
- !ruby/object:Gem::Dependency
|
47
|
+
name: rake
|
48
|
+
requirement: !ruby/object:Gem::Requirement
|
49
|
+
none: false
|
50
|
+
requirements:
|
51
|
+
- - ! '>='
|
52
|
+
- !ruby/object:Gem::Version
|
34
53
|
version: 0.9.2.2
|
35
54
|
type: :development
|
36
|
-
version_requirements: *id002
|
37
|
-
- !ruby/object:Gem::Dependency
|
38
|
-
name: rspec
|
39
55
|
prerelease: false
|
40
|
-
|
56
|
+
version_requirements: !ruby/object:Gem::Requirement
|
57
|
+
none: false
|
58
|
+
requirements:
|
59
|
+
- - ! '>='
|
60
|
+
- !ruby/object:Gem::Version
|
61
|
+
version: 0.9.2.2
|
62
|
+
- !ruby/object:Gem::Dependency
|
63
|
+
name: rspec
|
64
|
+
requirement: !ruby/object:Gem::Requirement
|
41
65
|
none: false
|
42
|
-
requirements:
|
43
|
-
- -
|
44
|
-
- !ruby/object:Gem::Version
|
66
|
+
requirements:
|
67
|
+
- - ! '>='
|
68
|
+
- !ruby/object:Gem::Version
|
45
69
|
version: 2.9.0
|
46
70
|
type: :development
|
47
|
-
|
48
|
-
|
71
|
+
prerelease: false
|
72
|
+
version_requirements: !ruby/object:Gem::Requirement
|
73
|
+
none: false
|
74
|
+
requirements:
|
75
|
+
- - ! '>='
|
76
|
+
- !ruby/object:Gem::Version
|
77
|
+
version: 2.9.0
|
78
|
+
- !ruby/object:Gem::Dependency
|
49
79
|
name: mocha
|
80
|
+
requirement: !ruby/object:Gem::Requirement
|
81
|
+
none: false
|
82
|
+
requirements:
|
83
|
+
- - ! '>='
|
84
|
+
- !ruby/object:Gem::Version
|
85
|
+
version: 0.10.5
|
86
|
+
type: :development
|
50
87
|
prerelease: false
|
51
|
-
|
88
|
+
version_requirements: !ruby/object:Gem::Requirement
|
52
89
|
none: false
|
53
|
-
requirements:
|
54
|
-
- -
|
55
|
-
- !ruby/object:Gem::Version
|
90
|
+
requirements:
|
91
|
+
- - ! '>='
|
92
|
+
- !ruby/object:Gem::Version
|
56
93
|
version: 0.10.5
|
94
|
+
- !ruby/object:Gem::Dependency
|
95
|
+
name: yard
|
96
|
+
requirement: !ruby/object:Gem::Requirement
|
97
|
+
none: false
|
98
|
+
requirements:
|
99
|
+
- - ! '>='
|
100
|
+
- !ruby/object:Gem::Version
|
101
|
+
version: 0.8.2
|
57
102
|
type: :development
|
58
|
-
|
59
|
-
|
103
|
+
prerelease: false
|
104
|
+
version_requirements: !ruby/object:Gem::Requirement
|
105
|
+
none: false
|
106
|
+
requirements:
|
107
|
+
- - ! '>='
|
108
|
+
- !ruby/object:Gem::Version
|
109
|
+
version: 0.8.2
|
110
|
+
description: RTPConnect is a file format used in radiotherapy for export & import
|
111
|
+
of treatment planning data.
|
60
112
|
email: chris.lervag@gmail.com
|
61
113
|
executables: []
|
62
|
-
|
63
114
|
extensions: []
|
64
|
-
|
65
115
|
extra_rdoc_files: []
|
66
|
-
|
67
|
-
files:
|
116
|
+
files:
|
68
117
|
- lib/rtp-connect/constants.rb
|
69
118
|
- lib/rtp-connect/control_point.rb
|
119
|
+
- lib/rtp-connect/dose_tracking.rb
|
70
120
|
- lib/rtp-connect/extended_field.rb
|
71
121
|
- lib/rtp-connect/field.rb
|
72
122
|
- lib/rtp-connect/logging.rb
|
73
123
|
- lib/rtp-connect/methods.rb
|
74
124
|
- lib/rtp-connect/plan.rb
|
125
|
+
- lib/rtp-connect/plan_to_dcm.rb
|
75
126
|
- lib/rtp-connect/prescription.rb
|
76
127
|
- lib/rtp-connect/record.rb
|
77
128
|
- lib/rtp-connect/ruby_extensions.rb
|
@@ -81,33 +132,34 @@ files:
|
|
81
132
|
- lib/rtp-connect.rb
|
82
133
|
- CHANGELOG.rdoc
|
83
134
|
- COPYING
|
135
|
+
- Gemfile
|
136
|
+
- Gemfile.lock
|
137
|
+
- rakefile.rb
|
84
138
|
- README.rdoc
|
139
|
+
- rtp-connect.gemspec
|
85
140
|
homepage: https://github.com/dicom/rtp-connect
|
86
|
-
licenses:
|
87
|
-
-
|
141
|
+
licenses:
|
142
|
+
- GPLv3
|
88
143
|
post_install_message:
|
89
144
|
rdoc_options: []
|
90
|
-
|
91
|
-
require_paths:
|
145
|
+
require_paths:
|
92
146
|
- lib
|
93
|
-
required_ruby_version: !ruby/object:Gem::Requirement
|
147
|
+
required_ruby_version: !ruby/object:Gem::Requirement
|
94
148
|
none: false
|
95
|
-
requirements:
|
96
|
-
- -
|
97
|
-
- !ruby/object:Gem::Version
|
149
|
+
requirements:
|
150
|
+
- - ! '>='
|
151
|
+
- !ruby/object:Gem::Version
|
98
152
|
version: 1.9.2
|
99
|
-
required_rubygems_version: !ruby/object:Gem::Requirement
|
153
|
+
required_rubygems_version: !ruby/object:Gem::Requirement
|
100
154
|
none: false
|
101
|
-
requirements:
|
102
|
-
- -
|
103
|
-
- !ruby/object:Gem::Version
|
155
|
+
requirements:
|
156
|
+
- - ! '>='
|
157
|
+
- !ruby/object:Gem::Version
|
104
158
|
version: 1.8.6
|
105
159
|
requirements: []
|
106
|
-
|
107
160
|
rubyforge_project: rtp-connect
|
108
|
-
rubygems_version: 1.8.
|
161
|
+
rubygems_version: 1.8.24
|
109
162
|
signing_key:
|
110
163
|
specification_version: 3
|
111
164
|
summary: Library for handling RTPConnect files.
|
112
165
|
test_files: []
|
113
|
-
|