rsruby 0.4.0 → 0.4.2

data/test/tc_vars.rb

@@ -1,28 +1,28 @@
 require 'test/unit'
 require 'rsruby'
 
-unless $r
-  $r = RSRuby.instance
-end
-
 class TestVars < Test::Unit::TestCase
 
+  def setup
+    @r = RSRuby.instance
+  end
+
   def test_get_vars
-    $r.eval_R("f<-function(x) x+1")
-    $r.assign('x',100)
-    $r.assign('v',(1..10).to_a)
+    @r.eval_R("f<-function(x) x+1")
+    @r.assign('x',100)
+    @r.assign('v',(1..10).to_a)
     #There is a difference here between RPy and us
     #a final hash argument is treated as named arguments
     #to the original function call (assign) not as a list
     #to be given to the function
-    $r.c.autoconvert(RSRuby::NO_CONVERSION)
-    $r.assign('d',$r.c({'a' => 1, 'b' => 2}))
-    $r.c.autoconvert(RSRuby::BASIC_CONVERSION)
+    @r.c.autoconvert(RSRuby::NO_CONVERSION)
+    @r.assign('d',@r.c({'a' => 1, 'b' => 2}))
+    @r.c.autoconvert(RSRuby::BASIC_CONVERSION)
 
-    assert_equal($r.x, 100)
-    assert_equal($r.v, (1..10).to_a)
-    assert_equal($r.d, $r.c({'a' => 1, 'b' => 2}))
-    assert_equal($r.f.class, $r.c.class)
+    assert_equal(@r.x, 100)
+    assert_equal(@r.v, (1..10).to_a)
+    assert_equal(@r.d, @r.c({'a' => 1, 'b' => 2}))
+    assert_equal(@r.f.class, @r.c.class)
   end
 
 end

data/test/test_all.rb

@@ -0,0 +1,21 @@
+#Tests all test cases for rsruby
+
+require 'test/unit'
+
+require 'tc_array'
+require 'tc_boolean'
+require 'tc_cleanup'
+require 'tc_eval'
+require 'tc_extensions'
+require 'tc_init'
+#require 'tc_io'
+require 'tc_library'
+require 'tc_modes'
+require 'tc_robj'
+#require 'tc_sigint'
+require 'tc_to_ruby'
+require 'tc_to_r'
+require 'tc_util'
+require 'tc_vars'
+
+

metadata

@@ -1,18 +1,18 @@
 --- !ruby/object:Gem::Specification 
-rubygems_version: 0.8.11
+rubygems_version: 0.9.0
 specification_version: 1
 name: rsruby
 version: !ruby/object:Gem::Version 
-  version: 0.4.0
-date: 2006-11-14 00:00:00 +09:00
-summary: An R to Ruby bridge
+  version: 0.4.2
+date: 2007-01-16 00:00:00 +09:00
+summary: RSRuby is a bridge library for Ruby giving Ruby developers access to the full R statistical programming environment. RSRuby embeds a full R interpreter inside the running Ruby script, allowing R methods to be called and data passed between the Ruby script and the R interpreter. Most data conversion is handled automatically, but user-definable conversion routines can also be written to handle any R or Ruby class.
 require_paths: 
 - lib
 - ext
 email: alexg@kuicr.kyoto-u.ac.jp
 homepage: http://web.kuicr.kyoto-u.ac.jp/~alexg/rsruby/
-rubyforge_project: 
-description: 
+rubyforge_project: rsruby
+description: RSRuby is a bridge library for Ruby giving Ruby developers access to the full R statistical programming environment. RSRuby embeds a full R interpreter inside the running Ruby script, allowing R methods to be called and data passed between the Ruby script and the R interpreter. Most data conversion is handled automatically, but user-definable conversion routines can also be written to handle any R or Ruby class.
 autorequire: 
 default_executable: 
 bindir: bin
@@ -26,63 +26,57 @@ required_ruby_version: !ruby/object:Gem::Version::Requirement
 platform: ruby
 signing_key: 
 cert_chain: 
+post_install_message: 
 authors: 
 - Alex Gutteridge
 files: 
-- lib/rsruby.rb
-- lib/rsruby/robj.rb
-- lib/rsruby/erobj.rb
-- lib/rsruby/dataframe.rb
-- ext/rsruby/Converters.c
-- ext/rsruby/rsruby.c
-- ext/rsruby/R_eval.c
-- ext/rsruby/robj.c
-- ext/rsruby/Converters.h
-- ext/rsruby/rsruby.h
-- ext/rsruby/R_eval.h
-- ext/rsruby/extconf.rb
-- test/tc_array.rb
-- test/tc_boolean.rb
-- test/tc_cleanup.rb
-- test/tc_eval.rb
-- test/tc_io.rb
-- test/tc_to_r.rb
-- test/tc_library.rb
-- test/tc_init.rb
-- test/tc_util.rb
-- test/tc_modes.rb
-- test/tc_robj.rb
-- test/tc_sigint.rb
-- test/tc_to_ruby.rb
-- test/tc_vars.rb
+- History.txt
+- License.txt
+- Manifest.txt
+- README.txt
 - examples/arrayfields.rb
 - examples/bioc.rb
 - examples/dataframe.rb
 - examples/erobj.rb
-- README
-test_files: 
+- ext/Converters.c
+- ext/Converters.h
+- ext/R_eval.c
+- ext/R_eval.h
+- ext/extconf.rb
+- ext/robj.c
+- ext/rsruby.c
+- ext/rsruby.h
+- lib/rsruby.rb
+- lib/rsruby/dataframe.rb
+- lib/rsruby/erobj.rb
+- lib/rsruby/robj.rb
+- test/table.txt
 - test/tc_array.rb
 - test/tc_boolean.rb
 - test/tc_cleanup.rb
 - test/tc_eval.rb
+- test/tc_extensions.rb
+- test/tc_init.rb
 - test/tc_io.rb
-- test/tc_to_r.rb
 - test/tc_library.rb
-- test/tc_init.rb
-- test/tc_util.rb
 - test/tc_modes.rb
 - test/tc_robj.rb
 - test/tc_sigint.rb
+- test/tc_to_r.rb
 - test/tc_to_ruby.rb
+- test/tc_util.rb
 - test/tc_vars.rb
+- test/test_all.rb
+test_files: 
+- test/test_all.rb
 rdoc_options: []
 
-extra_rdoc_files: 
-- README
+extra_rdoc_files: []
+
 executables: []
 
 extensions: 
-- ext/rsruby/extconf.rb
+- ext/extconf.rb
 requirements: []
 
 dependencies: []

data/README

@@ -1,102 +0,0 @@
-== Introduction
-
-RSRuby is a partial conversion of RPy (http://rpy.sourceforge.net/), the original RSRuby was based on RSPerl (http://www.omegahat.org/RSPerl/) (hence RSRuby), however almost all the code is now from RPy. RSRuby provides the ability to embed a full R interpreter inside a running Ruby script. R methods can then be called from the Ruby script and data passed between the R interpreter and the Ruby script.
-
-== License
-
-Copyright (C) 2006 Alex Gutteridge
-
-The Original Code is the RPy python module.
-
-The Initial Developer of the Original Code is Walter Moreira.
-Portions created by the Initial Developer are Copyright (C) 2002
-the Initial Developer. All Rights Reserved.
-
-Contributor(s):
-Gregory R. Warnes <greg@warnes.net> (RPy Maintainer)
-
-This library is free software; you can redistribute it and/or
-modify it under the terms of the GNU Lesser General Public
-License as published by the Free Software Foundation; either
-version 2.1 of the License, or (at your option) any later version.
-
-This library is distributed in the hope that it will be useful,
-but WITHOUT ANY WARRANTY; without even the implied warranty of
-MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
-Lesser General Public License for more details.
-
-You should have received a copy of the GNU Lesser General Public
-License along with this library; if not, write to the Free Software
-Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301  USA
-
-== Installation
-
-Obviously a working R installation is required. R must have been installed/built with the '--enable-R-shlib' option enabled to provide the R shared library. I have tested on R version 2.2.1, but earlier version might work.
-
-Firstly, on OS X please set the compiler to gcc 3.3
-
-	sudo gcc_select 3.3
-
-Then (on all systems) to install:
-
-1. Set the R_HOME environment variable appropriately:
-
-	R_HOME=/usr/lib/R (on my Ubuntu Linux box)
-	R_HOME=/Library/Frameworks/R.framework/Resources (on OS X)
-
-2. Compile/install the Ruby library using setup.rb. You need to supply the location of your R installation for the libR shared library. This may be the same as R_HOME, e.g. ('/usr/lib/R' on Ubuntu, '/Library/Frameworks/R.framework/Resources' on OS X):
-
-	cd rsruby
-	ruby setup.rb config -- --with-R-dir=/usr/lib/R
-	ruby setup.rb setup
-	sudo ruby setup.rb install
-
-If RSRuby does not compile you may need to configure the path to the R library (this wasn't required on either of my machines, but your mileage may vary). From the RPy README, anyone of the following should be sufficient:
-
-o make a link to RHOME/bin/libR.so in /usr/local/lib or /usr/lib, then
-  run 'ldconfig',
-
-o or, put the following line in your .bashrc (or equivalent):
-
-    export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:RHOME/bin
-
-o or, edit the file /etc/ld.so.conf and add the following line:
-
-    RHOME/bin
-
-  and then, run 'ldconfig'.
-
-3. Test it.
-
-	ruby setup.rb test
-
-Should pass all tests.
-
-== Installation Notes
-
-If you're brave then you can combine the config, setup and install steps into 'sudo ruby setup.rb all -- --with-R-dir=/usr/lib/R'.
-
-You can avoid needing root/sudo access in the install step by providing setup.rb with a suitable install directory (such as home). Please run 'ruby setup.rb --help' for more details.
-
-A Ruby Gem version of RSRuby is also available.
-
-== Usage
-
-To use (read examples and tests for more hints - the RPy manual will also be helpful until I have written something similar myself!):
-
- #Initialize R
- require 'rsruby'
-
- #RSRuby uses Singleton design pattern so call instance rather
- #than new
- r = RSRuby.instance
- #Call R functions
- data = r.rnorm(100)
- r.plot(data)
- sleep(2)
- #Call with named args
- r.plot({'x' => data,
-         'y' => data,
-         'xlab' => 'test',
-         'ylab' => 'test'})
- sleep(2)