rpipe 0.1.2 → 0.1.3

data/VERSION

@@ -1 +1 @@
-0.1.2
+0.1.3

data/bin/summarize_responses.rb

@@ -0,0 +1,44 @@
+#!/usr/bin/env ruby
+$LOAD_PATH.unshift File.join(File.dirname(__FILE__), '..', 'lib')
+require 'rubygems'
+require 'optparse'
+require 'logfile'
+
+def summarize!
+  # Parse CLI Options and Spec File
+  cli_options = parse_options  
+  begin
+    # Summarize a Directory of Logfiles
+    Logfile.write_summary(cli_options[:filename], cli_options[:directory], cli_options[:grouping])
+  rescue IOError => e
+    puts e
+  end
+end
+
+def parse_options
+  options = { :filename => nil, :directory => nil, :grouping => nil}
+  parser = OptionParser.new do |opts|
+    opts.banner = "Usage: #{File.basename(__FILE__)} [options]"
+
+    opts.on('-f', '--filename FILENAME', "Filename for summary (i.e. summary.csv")     do |filename| 
+      options[:filename] = filename
+    end
+    
+    opts.on('-d', '--directory DIRECTORY', "Directory containing Button-press Response Logfiles")     do |responses_dir| 
+      options[:directory] = File.expand_path(responses_dir)
+    end
+
+    opts.on('-g', '--grouping', "Grouping variable for summary.") do |grouping|
+      options[:grouping] = grouping
+    end
+    
+    opts.on_tail('-h', '--help', "Show this message")  { puts(parser); exit }
+    opts.on_tail("Example: #{File.basename(__FILE__)} -f johnson.predict.visit1.response_summary.csv")
+  end
+  parser.parse!(ARGV)
+  
+  return options
+end
+
+# All that for this.
+summarize!

data/lib/logfile.rb

@@ -99,7 +99,14 @@ class Logfile
     File.stat(@textfile).mtime <=> File.stat(other_logfile.textfile).mtime
   end
   
-  def self.write_summary(filename = 'tmp.csv', directory = Dir.pwd, grouping = 'version')
+  def self.write_summary(filename = nil, directory = nil, grouping = nil)
+    # One usage for this method is from the summarize_responses.rb executible,
+    # which doesn't allow for ordered arguments on the fly.  Therefore,
+    # assign defaults within the method itself, not the signature.
+    filename ||= 'tmp.csv'
+    directory ||= Dir.pwd
+    grouping ||= 'version'
+    
     table = self.summarize_directory(directory)
     File.open(filename, 'w') do |f| 
       f.puts Ruport::Data::Grouping(table, :by => grouping).to_csv

data/rpipe.gemspec

@@ -5,14 +5,14 @@
 
 Gem::Specification.new do |s|
   s.name = %q{rpipe}
-  s.version = "0.1.2"
+  s.version = "0.1.3"
 
   s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
   s.authors = ["Kristopher Kosmatka", "Erik Kastman"]
-  s.date = %q{2011-03-07}
+  s.date = %q{2011-03-24}
   s.description = %q{Neuroimaging preprocessing the Ruby way}
   s.email = %q{kjkosmatka@gmail.com}
-  s.executables = ["swallow_batch_run.rb", "rpipe", "create_driver.rb"]
+  s.executables = ["swallow_batch_run.rb", "rpipe", "summarize_responses.rb", "create_driver.rb"]
   s.extra_rdoc_files = [
     "LICENSE",
     "README",
@@ -28,6 +28,7 @@ Gem::Specification.new do |s|
     "VERSION",
     "bin/create_driver.rb",
     "bin/rpipe",
+    "bin/summarize_responses.rb",
     "bin/swallow_batch_run.rb",
     "lib/core_additions.rb",
     "lib/custom_methods/JohnsonMerit220Visit1Preproc.m",
@@ -155,6 +156,7 @@ Gem::Specification.new do |s|
       s.add_runtime_dependency(%q<rpipe>, [">= 0"])
       s.add_development_dependency(%q<shoulda>, [">= 0"])
       s.add_development_dependency(%q<thoughtbot-shoulda>, [">= 0"])
+      s.add_development_dependency(%q<thoughtbot-shoulda>, [">= 0"])
       s.add_runtime_dependency(%q<metamri>, [">= 0"])
       s.add_runtime_dependency(%q<log4r>, [">= 0"])
       s.add_runtime_dependency(%q<POpen4>, [">= 0"])
@@ -163,6 +165,7 @@ Gem::Specification.new do |s|
       s.add_dependency(%q<rpipe>, [">= 0"])
       s.add_dependency(%q<shoulda>, [">= 0"])
       s.add_dependency(%q<thoughtbot-shoulda>, [">= 0"])
+      s.add_dependency(%q<thoughtbot-shoulda>, [">= 0"])
       s.add_dependency(%q<metamri>, [">= 0"])
       s.add_dependency(%q<log4r>, [">= 0"])
       s.add_dependency(%q<POpen4>, [">= 0"])
@@ -172,6 +175,7 @@ Gem::Specification.new do |s|
     s.add_dependency(%q<rpipe>, [">= 0"])
     s.add_dependency(%q<shoulda>, [">= 0"])
     s.add_dependency(%q<thoughtbot-shoulda>, [">= 0"])
+    s.add_dependency(%q<thoughtbot-shoulda>, [">= 0"])
     s.add_dependency(%q<metamri>, [">= 0"])
     s.add_dependency(%q<log4r>, [">= 0"])
     s.add_dependency(%q<POpen4>, [">= 0"])

metadata

@@ -1,13 +1,13 @@
 --- !ruby/object:Gem::Specification 
 name: rpipe
 version: !ruby/object:Gem::Version 
-  hash: 31
+  hash: 29
   prerelease: 
   segments: 
   - 0
   - 1
-  - 2
-  version: 0.1.2
+  - 3
+  version: 0.1.3
 platform: ruby
 authors: 
 - Kristopher Kosmatka
@@ -16,7 +16,7 @@ autorequire:
 bindir: bin
 cert_chain: []
 
-date: 2011-03-07 00:00:00 -06:00
+date: 2011-03-24 00:00:00 -05:00
 default_executable: 
 dependencies: 
 - !ruby/object:Gem::Dependency 
@@ -63,8 +63,8 @@ dependencies:
   requirement: *id003
 - !ruby/object:Gem::Dependency 
   prerelease: false
-  name: metamri
-  type: :runtime
+  name: thoughtbot-shoulda
+  type: :development
   version_requirements: &id004 !ruby/object:Gem::Requirement 
     none: false
     requirements: 
@@ -77,7 +77,7 @@ dependencies:
   requirement: *id004
 - !ruby/object:Gem::Dependency 
   prerelease: false
-  name: log4r
+  name: metamri
   type: :runtime
   version_requirements: &id005 !ruby/object:Gem::Requirement 
     none: false
@@ -91,7 +91,7 @@ dependencies:
   requirement: *id005
 - !ruby/object:Gem::Dependency 
   prerelease: false
-  name: POpen4
+  name: log4r
   type: :runtime
   version_requirements: &id006 !ruby/object:Gem::Requirement 
     none: false
@@ -105,7 +105,7 @@ dependencies:
   requirement: *id006
 - !ruby/object:Gem::Dependency 
   prerelease: false
-  name: ruport
+  name: POpen4
   type: :runtime
   version_requirements: &id007 !ruby/object:Gem::Requirement 
     none: false
@@ -117,11 +117,26 @@ dependencies:
         - 0
         version: "0"
   requirement: *id007
+- !ruby/object:Gem::Dependency 
+  prerelease: false
+  name: ruport
+  type: :runtime
+  version_requirements: &id008 !ruby/object:Gem::Requirement 
+    none: false
+    requirements: 
+    - - ">="
+      - !ruby/object:Gem::Version 
+        hash: 3
+        segments: 
+        - 0
+        version: "0"
+  requirement: *id008
 description: Neuroimaging preprocessing the Ruby way
 email: kjkosmatka@gmail.com
 executables: 
 - swallow_batch_run.rb
 - rpipe
+- summarize_responses.rb
 - create_driver.rb
 extensions: []
 
@@ -139,6 +154,7 @@ files:
 - VERSION
 - bin/create_driver.rb
 - bin/rpipe
+- bin/summarize_responses.rb
 - bin/swallow_batch_run.rb
 - lib/core_additions.rb
 - lib/custom_methods/JohnsonMerit220Visit1Preproc.m