rpipe 0.0.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (104) hide show
  1. data/.document +5 -0
  2. data/.gitignore +23 -0
  3. data/LICENSE +20 -0
  4. data/README +0 -0
  5. data/README.rdoc +33 -0
  6. data/Rakefile +78 -0
  7. data/VERSION +1 -0
  8. data/bin/create_driver.rb +79 -0
  9. data/bin/rpipe +131 -0
  10. data/bin/swallow_batch_run.rb +21 -0
  11. data/lib/core_additions.rb +5 -0
  12. data/lib/custom_methods/JohnsonMerit220Visit1Preproc.m +26 -0
  13. data/lib/custom_methods/JohnsonMerit220Visit1Preproc.rb +43 -0
  14. data/lib/custom_methods/JohnsonMerit220Visit1Preproc_job.m +80 -0
  15. data/lib/custom_methods/JohnsonMerit220Visit1Stats.m +74 -0
  16. data/lib/custom_methods/JohnsonMerit220Visit1Stats.rb +63 -0
  17. data/lib/custom_methods/JohnsonMerit220Visit1Stats_job.m +63 -0
  18. data/lib/custom_methods/JohnsonTbiLongitudinalSnodPreproc.m +26 -0
  19. data/lib/custom_methods/JohnsonTbiLongitudinalSnodPreproc.rb +41 -0
  20. data/lib/custom_methods/JohnsonTbiLongitudinalSnodPreproc_job.m +69 -0
  21. data/lib/custom_methods/JohnsonTbiLongitudinalSnodStats.m +76 -0
  22. data/lib/custom_methods/JohnsonTbiLongitudinalSnodStats.rb +67 -0
  23. data/lib/custom_methods/JohnsonTbiLongitudinalSnodStats_job.m +59 -0
  24. data/lib/custom_methods/ReconWithHello.rb +7 -0
  25. data/lib/default_logger.rb +13 -0
  26. data/lib/default_methods/default_preproc.rb +76 -0
  27. data/lib/default_methods/default_recon.rb +80 -0
  28. data/lib/default_methods/default_stats.rb +94 -0
  29. data/lib/default_methods/recon/physionoise_helper.rb +69 -0
  30. data/lib/default_methods/recon/raw_sequence.rb +109 -0
  31. data/lib/generators/job_generator.rb +36 -0
  32. data/lib/generators/preproc_job_generator.rb +31 -0
  33. data/lib/generators/recon_job_generator.rb +76 -0
  34. data/lib/generators/stats_job_generator.rb +70 -0
  35. data/lib/generators/workflow_generator.rb +128 -0
  36. data/lib/global_additions.rb +18 -0
  37. data/lib/logfile.rb +310 -0
  38. data/lib/matlab_helpers/CreateFunctionalVolumeStruct.m +6 -0
  39. data/lib/matlab_helpers/import_csv.m +32 -0
  40. data/lib/matlab_helpers/matlab_queue.rb +37 -0
  41. data/lib/matlab_helpers/prepare_onsets_xls.m +30 -0
  42. data/lib/rpipe.rb +254 -0
  43. data/rpipe.gemspec +177 -0
  44. data/spec/generators/preproc_job_generator_spec.rb +27 -0
  45. data/spec/generators/recon_job_generator_spec.rb +33 -0
  46. data/spec/generators/stats_job_generator_spec.rb +50 -0
  47. data/spec/generators/workflow_generator_spec.rb +97 -0
  48. data/spec/helper_spec.rb +40 -0
  49. data/spec/integration/johnson.merit220.visit1_spec.rb +47 -0
  50. data/spec/integration/johnson.tbi.longitudinal.snod_spec.rb +48 -0
  51. data/spec/logfile_spec.rb +96 -0
  52. data/spec/matlab_queue_spec.rb +40 -0
  53. data/spec/merit220_stats_spec.rb +81 -0
  54. data/spec/physio_spec.rb +98 -0
  55. data/test/drivers/merit220_workflow_sample.yml +15 -0
  56. data/test/drivers/mrt00000.yml +65 -0
  57. data/test/drivers/mrt00015.yml +62 -0
  58. data/test/drivers/mrt00015_hello.yml +41 -0
  59. data/test/drivers/mrt00015_withphys.yml +81 -0
  60. data/test/drivers/tbi000.yml +129 -0
  61. data/test/drivers/tbi000_separatevisits.yml +137 -0
  62. data/test/drivers/tmp.yml +58 -0
  63. data/test/fixtures/faces3_recognitionA.mat +0 -0
  64. data/test/fixtures/faces3_recognitionA.txt +86 -0
  65. data/test/fixtures/faces3_recognitionA_equal.csv +25 -0
  66. data/test/fixtures/faces3_recognitionA_unequal.csv +21 -0
  67. data/test/fixtures/faces3_recognitionB_incmisses.txt +86 -0
  68. data/test/fixtures/physionoise_regressors/EPI__fMRI_Task1_CPd3R_40.txt +13360 -0
  69. data/test/fixtures/physionoise_regressors/EPI__fMRI_Task1_CPd3_40.txt +13360 -0
  70. data/test/fixtures/physionoise_regressors/EPI__fMRI_Task1_CPttl_40.txt +13360 -0
  71. data/test/fixtures/physionoise_regressors/EPI__fMRI_Task1_CRTd3R_40.txt +13360 -0
  72. data/test/fixtures/physionoise_regressors/EPI__fMRI_Task1_CRTd3_40.txt +13360 -0
  73. data/test/fixtures/physionoise_regressors/EPI__fMRI_Task1_CRTttl_40.txt +13360 -0
  74. data/test/fixtures/physionoise_regressors/EPI__fMRI_Task1_HalfTR_CRTd3R_40.txt +334 -0
  75. data/test/fixtures/physionoise_regressors/EPI__fMRI_Task1_HalfTR_CRTd3_40.txt +334 -0
  76. data/test/fixtures/physionoise_regressors/EPI__fMRI_Task1_HalfTR_CRTttl_40.txt +334 -0
  77. data/test/fixtures/physionoise_regressors/EPI__fMRI_Task1_HalfTR_RRT_40.txt +334 -0
  78. data/test/fixtures/physionoise_regressors/EPI__fMRI_Task1_HalfTR_RVT_40.txt +334 -0
  79. data/test/fixtures/physionoise_regressors/EPI__fMRI_Task1_HalfTR_card_spline_40.txt +334 -0
  80. data/test/fixtures/physionoise_regressors/EPI__fMRI_Task1_HalfTR_resp_spline_40.txt +334 -0
  81. data/test/fixtures/physionoise_regressors/EPI__fMRI_Task1_RRT_40.txt +9106 -0
  82. data/test/fixtures/physionoise_regressors/EPI__fMRI_Task1_RVT_40.txt +9106 -0
  83. data/test/fixtures/physionoise_regressors/EPI__fMRI_Task1_TR_CRTd3R_40.txt +167 -0
  84. data/test/fixtures/physionoise_regressors/EPI__fMRI_Task1_TR_CRTd3_40.txt +167 -0
  85. data/test/fixtures/physionoise_regressors/EPI__fMRI_Task1_TR_CRTttl_40.txt +167 -0
  86. data/test/fixtures/physionoise_regressors/EPI__fMRI_Task1_TR_RRT_40.txt +167 -0
  87. data/test/fixtures/physionoise_regressors/EPI__fMRI_Task1_TR_RVT_40.txt +167 -0
  88. data/test/fixtures/physionoise_regressors/EPI__fMRI_Task1_TR_card_spline_40.txt +167 -0
  89. data/test/fixtures/physionoise_regressors/EPI__fMRI_Task1_TR_resp_spline_40.txt +167 -0
  90. data/test/fixtures/physionoise_regressors/EPI__fMRI_Task1_card_spline_40.txt +13360 -0
  91. data/test/fixtures/physionoise_regressors/EPI__fMRI_Task1_resp_spline_40.txt +9106 -0
  92. data/test/fixtures/physionoise_regressors/EPI__fMRI_Task1_resp_spline_downsampled_40.txt +9106 -0
  93. data/test/fixtures/ruport_summary.yml +123 -0
  94. data/test/fixtures/valid_scans.yaml +35 -0
  95. data/test/helper.rb +10 -0
  96. data/test/test_dynamic_method_inclusion.rb +10 -0
  97. data/test/test_includes.rb +11 -0
  98. data/test/test_integrative_johnson.merit220.visit1.rb +31 -0
  99. data/test/test_preproc.rb +11 -0
  100. data/test/test_recon.rb +11 -0
  101. data/test/test_rpipe.rb +19 -0
  102. data/vendor/output_catcher.rb +93 -0
  103. data/vendor/trollop.rb +781 -0
  104. metadata +260 -0
data/test/drivers/tbi000_separatevisits.yml ADDED
@@ -0,0 +1,137 @@
1
+ ---
2
+ subid: tbi000
3
+ origdir: <%= Dir.mktmpdir('orig') %>
4
+ procdir: <%= Dir.mktmpdir('proc') %>
5
+ statsdir: <%= @statsdir = Dir.mktmpdir('stats_separate') %>
6
+ study_procedure: johnson.tbi.longitudinal.snod
7
+ # task_onsets: /Data/vtrak1/analyses/aparna/tbifmrilongitudinal/johnson.tbi.longitudinal.snod/progs/snod_onsets.yml
8
+ collision: overwrite
9
+
10
+ jobs:
11
+ - step: reconstruct
12
+ rawdir: /Data/vtrak1/raw/test/fixtures/rpipe/johnson.tbi.longitudinal.snod/tbi000_1/raw
13
+ scans:
14
+ - label: v1_snodB
15
+ pfile: P38400.7
16
+ type: func
17
+ volumes_to_skip: 3
18
+ bold_reps: 141
19
+ task: snodB
20
+ - label: v1_snodA
21
+ pfile: P38912.7
22
+ type: func
23
+ volumes_to_skip: 3
24
+ bold_reps: 141
25
+ task: snodA
26
+ - step: reconstruct
27
+ rawdir: /Data/vtrak1/raw/test/fixtures/rpipe/johnson.tbi.longitudinal.snod/tbi000_2/raw
28
+ scans:
29
+ - label: v2_snodC
30
+ pfile: P33280.7
31
+ type: func
32
+ volumes_to_skip: 3
33
+ bold_reps: 141
34
+ task: snodC
35
+ - label: v2_snodD
36
+ pfile: P33792.7
37
+ type: func
38
+ volumes_to_skip: 3
39
+ bold_reps: 141
40
+ task: snodD
41
+ - step: reconstruct
42
+ rawdir: /Data/vtrak1/raw/test/fixtures/rpipe/johnson.tbi.longitudinal.snod/tbi000_3/raw
43
+ scans:
44
+ - label: v3_snodB
45
+ pfile: P61440.7
46
+ type: func
47
+ volumes_to_skip: 3
48
+ bold_reps: 141
49
+ task: snodB
50
+ - label: v3_snodA
51
+ pfile: P61952.7
52
+ type: func
53
+ volumes_to_skip: 3
54
+ bold_reps: 141
55
+ task: snodA
56
+
57
+ - step: preprocess
58
+ method: JohnsonTbiLongitudinalSnodPreproc
59
+ bold_reps:
60
+ - 138
61
+ - 138
62
+ scan_labels:
63
+ - v1_snodB
64
+ - v1_snodA
65
+ - step: preprocess
66
+ method: JohnsonTbiLongitudinalSnodPreproc
67
+ bold_reps:
68
+ - 138
69
+ - 138
70
+ scan_labels:
71
+ - v2_snodC
72
+ - v2_snodD
73
+ - step: preprocess
74
+ method: JohnsonTbiLongitudinalSnodPreproc
75
+ bold_reps:
76
+ - 138
77
+ - 138
78
+ scan_labels:
79
+ - v3_snodB
80
+ - v3_snodA
81
+
82
+ - step: stats
83
+ statsdir: <%= File.join(@statsdir, 'v1') %>
84
+ method: JohnsonTbiLongitudinalSnodStats
85
+ scan_labels:
86
+ - v1_snodB
87
+ - v1_snodA
88
+ onsetsfiles:
89
+ - /Data/vtrak1/analyses/aparna/tbifmrilongitudinal/johnson.tbi.longitudinal.snod/progs/onsets/snodB_vectors.mat
90
+ - /Data/vtrak1/analyses/aparna/tbifmrilongitudinal/johnson.tbi.longitudinal.snod/progs/onsets/snodA_vectors.mat
91
+ regressorsfiles:
92
+ - rp_atbi000_v1_snodB.txt
93
+ - rp_atbi000_v1_snodA.txt
94
+ bold_reps:
95
+ - 138
96
+ - 138
97
+ conditions:
98
+ - new
99
+ - old
100
+
101
+ - step: stats
102
+ statsdir: <%= File.join(@statsdir, 'v2') %>
103
+ method: JohnsonTbiLongitudinalSnodStats
104
+ scan_labels:
105
+ - v2_snodC
106
+ - v2_snodD
107
+ onsetsfiles:
108
+ - /Data/vtrak1/analyses/aparna/tbifmrilongitudinal/johnson.tbi.longitudinal.snod/progs/onsets/snodC_vectors.mat
109
+ - /Data/vtrak1/analyses/aparna/tbifmrilongitudinal/johnson.tbi.longitudinal.snod/progs/onsets/snodD_vectors.mat
110
+ regressorsfiles:
111
+ - rp_atbi000_v2_snodC.txt
112
+ - rp_atbi000_v2_snodD.txt
113
+ bold_reps:
114
+ - 138
115
+ - 138
116
+ conditions:
117
+ - new
118
+ - old
119
+
120
+ - step: stats
121
+ statsdir: <%= File.join(@statsdir, 'v3') %>
122
+ method: JohnsonTbiLongitudinalSnodStats
123
+ scan_labels:
124
+ - v3_snodB
125
+ - v3_snodA
126
+ onsetsfiles:
127
+ - /Data/vtrak1/analyses/aparna/tbifmrilongitudinal/johnson.tbi.longitudinal.snod/progs/onsets/snodB_vectors.mat
128
+ - /Data/vtrak1/analyses/aparna/tbifmrilongitudinal/johnson.tbi.longitudinal.snod/progs/onsets/snodA_vectors.mat
129
+ regressorsfiles:
130
+ - rp_atbi000_v3_snodB.txt
131
+ - rp_atbi000_v3_snodA.txt
132
+ bold_reps:
133
+ - 138
134
+ - 138
135
+ conditions:
136
+ - new
137
+ - old
data/test/drivers/tmp.yml ADDED
@@ -0,0 +1,58 @@
1
+ subid: Swallow003
2
+ rawdir: /Data/mri_studies/swallow/stroke/analyses/kris/pipetest/raw/Swallow003
3
+ origdir: /Data/mri_studies/swallow/stroke/analyses/kris/pipetest/orig/Swallow003
4
+ procdir: /Data/mri_studies/swallow/stroke/analyses/kris/pipetest/proc/Swallow003
5
+ spmdir: /Data/mri_studies/swallow/stroke/analyses/kris/pipetest/spmjobs
6
+
7
+ jobs:
8
+ - step: reconstruct
9
+ rawdir: /Data/mri_studies/swallow/stroke/analyses/kris/pipetest/raw/Swallow003/01
10
+ scans:
11
+ - dir: "002"
12
+ type: anat
13
+ label: v01_T1
14
+ z_slices: 106
15
+ - dir: "003"
16
+ type: func
17
+ label: v01_sw01
18
+ task: bolus
19
+ bold_reps: 148
20
+ z_slices: 30
21
+ - dir: "004"
22
+ type: func
23
+ label: v01_sw02
24
+ task: bolus
25
+ bold_reps: 148
26
+ z_slices: 30
27
+ - dir: "005"
28
+ type: func
29
+ label: v01_sw03
30
+ task: bolus
31
+ bold_reps: 148
32
+ z_slices: 30
33
+ - dir: "006"
34
+ type: func
35
+ label: v01_pr01
36
+ task: press
37
+ bold_reps: 89
38
+ z_slices: 30
39
+ - dir: "007"
40
+ type: func
41
+ label: v01_pr02
42
+ task: press
43
+ bold_reps: 89
44
+ z_slices: 30
45
+
46
+ - step: preprocess
47
+ template_spec:
48
+ job: template_pipetest_spatial_preproc.mat
49
+ subid: Swallow003
50
+
51
+ - step: stats
52
+ onsets_files:
53
+ - Swallow003_v01_sw01_onsets.mat
54
+ - Swallow003_v01_sw02_onsets.mat
55
+ - Swallow003_v01_sw03_onsets.mat
56
+ template_spec:
57
+ job: template_stats.mat
58
+ subid: Swallow003
data/test/fixtures/faces3_recognitionA.txt ADDED
@@ -0,0 +1,86 @@
1
+ Total Count, Hits, Misses, Hit%, Correct, Incorrect, Accuracy%, RT min, RT max, RT avg, RT stdev, old_stimuli, old_hits, old_misses, old_hit_percent, old_correct_count, old_incorrect_count, old_accuracy, old_rt_min, old_rt_max, old_rt_avg, old_rt_stdev, old_correct, old_correct_rt_min, old_correct_rt_max, old_correct_rt_avg, old_correct_rt_stdev, old_incorrect, old_incorrect_rt_min, old_incorrect_rt_max, old_incorrect_rt_avg, old_incorrect_rt_stdev, new_stimuli, new_hits, new_misses, new_hit_percent, new_correct_count, new_incorrect_count, new_accuracy, new_rt_min, new_rt_max, new_rt_avg, new_rt_stdev, new_correct, new_correct_rt_min, new_correct_rt_max, new_correct_rt_avg, new_correct_rt_stdev, new_incorrect, new_incorrect_rt_min, new_incorrect_rt_max, new_incorrect_rt_avg, new_incorrect_rt_stdev,
2
+ 48,48,0,100,35,13,72.9166667,799.4,2400.8,1378.85208,357.924556,24,24,0,100,20,4,83.3333333,799.4,2067.6,1306.27083,301.032812,20,799.4,1801.4,1244.575,241.838353,4,1150.3,2067.6,1614.75,370.275982,24,24,0,100,15,9,62.5,945.6,2400.8,1451.43333,393.78058,15,1087.9,2400.8,1464.65333,414.191973,9,945.6,2123.4,1429.4,356.089861,
3
+
4
+
5
+
6
+ Condition, Count, Hits, Misses, Hit%, Correct, Incorrect, Accuracy%, RT min, RT max, RT avg, RT stdev
7
+ Total,48,48,0,100,35,13,72.9166667,799.4,2400.8,1378.85208,357.924556
8
+ New,24,24,0,100,15,9,62.5,945.6,2400.8,1451.43333,393.78058
9
+ New(Correct),15,,,,,,,1087.9,2400.8,1464.65333,414.191973
10
+ New(Inorrect),9,,,,,,,945.6,2123.4,1429.4,356.089861
11
+ Old,24,24,0,100,20,4,83.3333333,799.4,2067.6,1306.27083,301.032812
12
+ Old(Correct),20,,,,,,,799.4,1801.4,1244.575,241.838353
13
+ Old(Inorrect),4,,,,,,,1150.3,2067.6,1614.75,370.275982
14
+
15
+
16
+
17
+ All Stimuli:,time1,12124.7,18129.8,23120.1,30123.3,38124.6,44129.7,50134.8,57138,63143.1,67135.4,73140.5,81141.7,85150.7,94150,105144.3,112148.7,120166.6,124158.9,131162.1,137167.2,142174.2,151173.5,157178.7,161171,167176.1,172183.1,183178.6,189183.7,195188.8,206184.3,214184.5,218194.5,224199.6,233198.9,238205.9,245209.1,252212.3,258217.4,264205.9,274219.9,282221.2,287228.2,295229.5,301217.9,306224.9,315224.3,323225.5,328232.6,
18
+ All Hits:,time1,12124.7,18129.8,23120.1,30123.3,38124.6,44129.7,50134.8,57138,63143.1,67135.4,73140.5,81141.7,85150.7,94150,105144.3,112148.7,120166.6,124158.9,131162.1,137167.2,142174.2,151173.5,157178.7,161171,167176.1,172183.1,183178.6,189183.7,195188.8,206184.3,214184.5,218194.5,224199.6,233198.9,238205.9,245209.1,252212.3,258217.4,264205.9,274219.9,282221.2,287228.2,295229.5,301217.9,306224.9,315224.3,323225.5,328232.6,
19
+ All Misses:,time1,
20
+ Old:,time1,12124.7,30123.3,57138,63143.1,94150,105144.3,120166.6,131162.1,151173.5,157178.7,167176.1,172183.1,183178.6,195188.8,206184.3,224199.6,233198.9,238205.9,245209.1,264205.9,274219.9,295229.5,301217.9,306224.9,
21
+ Old(Correct):,time1,30123.3,57138,63143.1,94150,105144.3,120166.6,131162.1,157178.7,167176.1,172183.1,183178.6,195188.8,206184.3,224199.6,233198.9,238205.9,245209.1,264205.9,295229.5,306224.9,
22
+ Old(Incorrect):,time1,12124.7,151173.5,274219.9,301217.9,
23
+ Old(Misses):,time1,
24
+ New:,time1,18129.8,23120.1,38124.6,44129.7,50134.8,67135.4,73140.5,81141.7,85150.7,112148.7,124158.9,137167.2,142174.2,161171,189183.7,214184.5,218194.5,252212.3,258217.4,282221.2,287228.2,315224.3,323225.5,328232.6,
25
+ New(Correct):,time1,23120.1,44129.7,50134.8,67135.4,73140.5,85150.7,112148.7,142174.2,189183.7,214184.5,252212.3,258217.4,282221.2,315224.3,328232.6,
26
+ New(Incorrect):,time1,18129.8,38124.6,81141.7,124158.9,137167.2,161171,218194.5,287228.2,323225.5,
27
+ New(Misses):,time1,
28
+
29
+
30
+
31
+ pair_type,code1,time1,code2,time2,time_diff
32
+ old_incorrect,o_m14,12124.7,2,14192.3,2067.6
33
+ new_incorrect,n_f36,18129.8,1,19856.8,1727
34
+ new_correct,n_f45,23120.1,2,24545.2,1425.1
35
+ old_correct,o_f02,30123.3,1,31924.7,1801.4
36
+ new_incorrect,n_m37,38124.6,1,39270.2,1145.6
37
+ new_correct,n_f46,44129.7,2,45486.8,1357.1
38
+ new_correct,n_m45,50134.8,2,52148.5,2013.7
39
+ old_correct,o_f17,57138,1,58283.3,1145.3
40
+ old_correct,o_m11,63143.1,1,64629,1485.9
41
+ new_correct,n_m29,67135.4,2,69536.2,2400.8
42
+ new_correct,n_f33,73140.5,2,74313.2,1172.7
43
+ new_incorrect,n_f40,81141.7,1,82790.7,1649
44
+ new_correct,n_f35,85150.7,2,87455,2304.3
45
+ old_correct,o_f18,94150,1,95723.7,1573.7
46
+ old_correct,o_f12,105144.3,1,106580.7,1436.4
47
+ new_correct,n_f31,112148.7,2,113708.5,1559.8
48
+ old_correct,o_f01,120166.6,1,121326.5,1159.9
49
+ new_incorrect,n_m40,124158.9,1,125261.6,1102.7
50
+ old_correct,o_m15,131162.1,1,132198.2,1036.1
51
+ new_incorrect,n_m30,137167.2,1,138375,1207.8
52
+ new_correct,n_f47,142174.2,2,143366.9,1192.7
53
+ old_incorrect,o_f24,151173.5,2,153046.6,1873.1
54
+ old_correct,o_f21,157178.7,1,158371.1,1192.4
55
+ new_incorrect,n_m41,161171,1,163294.4,2123.4
56
+ old_correct,o_m05,167176.1,1,168225.9,1049.8
57
+ old_correct,o_f06,172183.1,1,173244.3,1061.2
58
+ old_correct,o_m01,183178.6,1,184139,960.4
59
+ new_correct,n_f42,189183.7,2,190504.3,1320.6
60
+ old_correct,o_f19,195188.8,1,196292.4,1103.6
61
+ old_correct,o_m23,206184.3,1,207791.6,1607.3
62
+ new_correct,n_m47,214184.5,2,215577.6,1393.1
63
+ new_incorrect,n_f34,218194.5,1,219523.2,1328.7
64
+ old_correct,o_f14,224199.6,1,225464.7,1265.1
65
+ old_correct,o_m16,233198.9,1,234346,1147.1
66
+ old_correct,o_m22,238205.9,1,239005.3,799.4
67
+ old_correct,o_m20,245209.1,1,246232,1022.9
68
+ new_correct,n_m32,252212.3,2,253309,1096.7
69
+ new_correct,n_f25,258217.4,2,259544.5,1327.1
70
+ old_correct,o_f05,264205.9,1,265561.1,1355.2
71
+ old_incorrect,o_m19,274219.9,2,275587.9,1368
72
+ new_correct,n_m25,282221.2,2,283368.8,1147.6
73
+ new_incorrect,n_m48,287228.2,1,288173.8,945.6
74
+ old_correct,o_m24,295229.5,1,296573.2,1343.7
75
+ old_incorrect,o_m06,301217.9,2,302368.2,1150.3
76
+ old_correct,o_f10,306224.9,1,307569.6,1344.7
77
+ new_correct,n_m39,315224.3,2,316394.9,1170.6
78
+ new_incorrect,n_f44,323225.5,1,324860.3,1634.8
79
+ new_correct,n_m31,328232.6,2,329320.5,1087.9
80
+
81
+
82
+
83
+
84
+ Scan Log Percentages
85
+ Hit%:100
86
+ Accuracy%:72.9166667
data/test/fixtures/faces3_recognitionA_equal.csv ADDED
@@ -0,0 +1,25 @@
1
+ old,new
2
+ 0,3.00255
3
+ 8.9993,5.4977
4
+ 22.50665,12.99995
5
+ 25.5092,16.0025
6
+ 41.01265,19.00505
7
+ 46.5098,27.50535
8
+ 54.02095,30.5079
9
+ 59.5187,34.5085
10
+ 69.5244,36.513
11
+ 72.527,50.012
12
+ 77.5257,56.0171
13
+ 80.0292,62.52125
14
+ 85.52695,65.02475
15
+ 91.53205,74.52315
16
+ 97.0298,88.5295
17
+ 106.03745,101.0299
18
+ 110.5371,103.0349
19
+ 113.0406,120.0438
20
+ 116.5422,123.04635
21
+ 126.0406,135.04825
22
+ 131.0476,137.55175
23
+ 141.5524,151.5498
24
+ 144.5466,155.5504
25
+ 147.0501,158.05395
data/test/fixtures/faces3_recognitionA_unequal.csv ADDED
@@ -0,0 +1,21 @@
1
+ new_correct, new_incorrect, old_correct, old_incorrect
2
+ 11.55905, 9.0639, 15.06065, 150.60795
3
+ 22.06385, 19.0613, 28.568, 0.0
4
+ 25.0664, 40.56985, 31.57055, 151.1831
5
+ 33.5667, 62.07845, 47.074, 0.57415
6
+ 36.56925, 68.5826, 52.57115,
7
+ 42.57435, 80.5845, 60.0823,
8
+ 56.07335, 109.09625, 65.58005,
9
+ 71.0861, 143.6131, 78.58835,
10
+ 94.59085, 161.61175, 83.58705,
11
+ 107.09125, , 86.09055,
12
+ 126.10515, , 91.5883,
13
+ 129.1077, , 97.5934,
14
+ 141.1096, , 103.09115,
15
+ 157.61115, , 112.0988,
16
+ 164.1153, , 116.59845,
17
+ , , 119.10195,
18
+ , , 122.60355,
19
+ , , 132.10195,
20
+ , , 147.61375,
21
+ , , 153.11145,
data/test/fixtures/faces3_recognitionB_incmisses.txt ADDED
@@ -0,0 +1,86 @@
1
+ Total Count, Hits, Misses, Hit%, Correct, Incorrect, Accuracy%, RT min, RT max, RT avg, RT stdev, old_stimuli, old_hits, old_misses, old_hit_percent, old_correct_count, old_incorrect_count, old_accuracy, old_rt_min, old_rt_max, old_rt_avg, old_rt_stdev, old_correct, old_correct_rt_min, old_correct_rt_max, old_correct_rt_avg, old_correct_rt_stdev, old_incorrect, old_incorrect_rt_min, old_incorrect_rt_max, old_incorrect_rt_avg, old_incorrect_rt_stdev, new_stimuli, new_hits, new_misses, new_hit_percent, new_correct_count, new_incorrect_count, new_accuracy, new_rt_min, new_rt_max, new_rt_avg, new_rt_stdev, new_correct, new_correct_rt_min, new_correct_rt_max, new_correct_rt_avg, new_correct_rt_stdev, new_incorrect, new_incorrect_rt_min, new_incorrect_rt_max, new_incorrect_rt_avg, new_incorrect_rt_stdev,
2
+ 48,44,4,91.6666667,38,6,79.1666667,835.4,3509.9,1578.19773,519.319037,24,20,4,83.3333333,15,5,62.5,881.7,3509.9,1721.365,596.218537,15,881.7,3509.9,1743.86667,597.488977,5,1013.7,2595.6,1653.86,587.240191,24,24,0,100,23,1,95.8333333,835.4,2274.5,1458.89167,408.522584,23,835.4,2274.5,1436.4,402.499463,1,1976.2,1976.2,1976.2,0,
3
+
4
+
5
+
6
+ Condition, Count, Hits, Misses, Hit%, Correct, Incorrect, Accuracy%, RT min, RT max, RT avg, RT stdev
7
+ Total,48,44,4,91.6666667,38,6,79.1666667,835.4,3509.9,1578.19773,519.319037
8
+ New,24,24,0,100,23,1,95.8333333,835.4,2274.5,1458.89167,408.522584
9
+ New(Correct),23,,,,,,,835.4,2274.5,1436.4,402.499463
10
+ New(Inorrect),1,,,,,,,1976.2,1976.2,1976.2,0
11
+ Old,24,20,4,83.3333333,15,5,62.5,881.7,3509.9,1721.365,596.218537
12
+ Old(Correct),15,,,,,,,881.7,3509.9,1743.86667,597.488977
13
+ Old(Inorrect),5,,,,,,,1013.7,2595.6,1653.86,587.240191
14
+
15
+
16
+
17
+ All Stimuli:,time1,7966.1,13954.6,18961.7,25965,33966.3,39953.7,45960,52963.3,58968.4,62960.8,68966,76967.3,80959.7,89959.1,100971.4,107958,115959.3,119968.3,126971.6,132960.1,137967.2,146966.6,152971.8,156964.1,162969.3,167959.8,178972,184960.5,190965.7,201961.3,209962.7,213971.7,219960.2,229009.5,234016.6,241069.8,248189.5,254194.6,260183.2,270696.4,278681.1,283738.1,291739.4,297794.5,302801.6,311801,319802.4,324791.7,
18
+ All Hits:,time1,7966.1,13954.6,18961.7,25965,33966.3,39953.7,45960,52963.3,58968.4,62960.8,68966,76967.3,80959.7,89959.1,100971.4,107958,115959.3,119968.3,126971.6,132960.1,137967.2,146966.6,152971.8,156964.1,162969.3,167959.8,178972,184960.5,190965.7,201961.3,209962.7,213971.7,219960.2,229009.5,234016.6,248189.5,260183.2,283738.1,291739.4,297794.5,302801.6,311801,319802.4,324791.7,
19
+ All Misses:,time1,241069.8,254194.6,270696.4,278681.1,
20
+ Old:,time1,18961.7,25965,33966.3,45960,52963.3,62960.8,76967.3,107958,115959.3,126971.6,132960.1,152971.8,184960.5,190965.7,213971.7,219960.2,241069.8,248189.5,254194.6,270696.4,278681.1,283738.1,291739.4,302801.6,
21
+ Old(Correct):,time1,25965,33966.3,45960,52963.3,76967.3,107958,115959.3,126971.6,184960.5,190965.7,213971.7,248189.5,283738.1,291739.4,302801.6,
22
+ Old(Incorrect):,time1,18961.7,62960.8,132960.1,152971.8,219960.2,
23
+ Old(Misses):,time1,241069.8,270696.4,278681.1,
24
+ New:,time1,7966.1,13954.6,39953.7,58968.4,68966,80959.7,89959.1,100971.4,119968.3,137967.2,146966.6,156964.1,162969.3,167959.8,178972,201961.3,209962.7,229009.5,234016.6,260183.2,297794.5,311801,319802.4,324791.7,
25
+ New(Correct):,time1,7966.1,13954.6,39953.7,58968.4,68966,80959.7,89959.1,100971.4,119968.3,137967.2,146966.6,156964.1,162969.3,167959.8,178972,201961.3,209962.7,229009.5,234016.6,297794.5,311801,319802.4,324791.7,
26
+ New(Incorrect):,time1,260183.2,
27
+ New(Misses):,time1,254194.6,
28
+
29
+
30
+
31
+ pair_type,code1,time1,code2,time2,time_diff
32
+ new_correct,n_m43,7966.1,2,9178.1,1212
33
+ new_correct,n_m44,13954.6,2,15568.6,1614
34
+ old_incorrect,o_f09,18961.7,2,20706.6,1744.9
35
+ old_correct,o_m02,25965,1,27173.6,1208.6
36
+ old_correct,o_f04,33966.3,1,35646.1,1679.8
37
+ new_correct,n_f37,39953.7,2,41458.3,1504.6
38
+ old_correct,o_f20,45960,1,47536.8,1576.8
39
+ old_correct,o_m03,52963.3,1,54443.1,1479.8
40
+ new_correct,n_f38,58968.4,2,60089,1120.6
41
+ old_incorrect,o_m08,62960.8,2,64832,1871.2
42
+ new_correct,n_f26,68966,2,70849.3,1883.3
43
+ old_correct,o_f08,76967.3,1,79144.6,2177.3
44
+ new_correct,n_m42,80959.7,2,82804.9,1845.2
45
+ new_correct,n_f48,89959.1,2,91080.8,1121.7
46
+ new_correct,n_m28,100971.4,2,102032.3,1060.9
47
+ old_correct,o_m17,107958,1,109707.7,1749.7
48
+ old_correct,o_m09,115959.3,1,117993.4,2034.1
49
+ new_correct,n_f43,119968.3,2,120843.6,875.3
50
+ old_correct,o_m07,126971.6,1,129059.3,2087.7
51
+ old_incorrect,o_f22,132960.1,2,133973.8,1013.7
52
+ new_correct,n_f41,137967.2,2,140126.8,2159.6
53
+ new_correct,n_m46,146966.6,2,148350.6,1384
54
+ old_incorrect,o_m10,152971.8,2,155567.4,2595.6
55
+ new_correct,n_m34,156964.1,2,158827.8,1863.7
56
+ new_correct,n_f39,162969.3,2,164964.8,1995.5
57
+ new_correct,n_m27,167959.8,2,169538.8,1579
58
+ new_correct,n_f30,178972,2,181246.5,2274.5
59
+ old_correct,o_f16,184960.5,1,186789.4,1828.9
60
+ old_correct,o_f03,190965.7,1,192790.7,1825
61
+ new_correct,n_m26,201961.3,2,203013.4,1052.1
62
+ new_correct,n_m33,209962.7,2,210798.1,835.4
63
+ old_correct,o_m18,213971.7,1,215315.5,1343.8
64
+ old_incorrect,o_f15,219960.2,2,221004.1,1043.9
65
+ new_correct,n_f28,229009.5,2,230058.1,1048.6
66
+ new_correct,n_m38,234016.6,2,235308,1291.4
67
+ miss,o_f07,241069.8,,-1,-241070.8
68
+ old_correct,o_m13,248189.5,1,251699.4,3509.9
69
+ miss,o_f13,254194.6,,-1,-254195.6
70
+ new_incorrect,n_m35,260183.2,1,262159.4,1976.2
71
+ miss,o_f23,270696.4,,-1,-270697.4
72
+ miss,o_m12,278681.1,,-1,-278682.1
73
+ old_correct,o_m04,283738.1,1,284619.8,881.7
74
+ old_correct,o_f11,291739.4,1,292748.6,1009.2
75
+ new_correct,n_f32,297794.5,2,299142.9,1348.4
76
+ old_correct,o_m21,302801.6,1,304567.3,1765.7
77
+ new_correct,n_f27,311801,2,312877.4,1076.4
78
+ new_correct,n_f29,319802.4,2,321416.2,1613.8
79
+ new_correct,n_m36,324791.7,2,326068.9,1277.2
80
+
81
+
82
+
83
+
84
+ Scan Log Percentages
85
+ Hit%:91.6666667
86
+ Accuracy%:79.1666667