rof 1.0.7 → 1.2.0

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA1:
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-  data.tar.gz: 433b2a744b3600fe9dbd15536d95daeb2796f9f1
+  metadata.gz: aa7099ebb75041867fac5b65720c86773fb645e0
+  data.tar.gz: 21ab74ec208d2e2e6b41ef3ffa061b0824e45674
 SHA512:
-  metadata.gz: 4deb205a5a32c0a3c9765bd6e949a8e29063a23e6eb6f366012f71c75636cf0c26a3c298371651d1b646dadc4ef1002d64053c0b5345fd8574e917772d13d3bd
-  data.tar.gz: 173692dabcdee2fbcb720cbdc7a991ddb3d16cd39aa3e681e9370450731e9a51c6f4a093e75df9f59f30ae130dbcd27ad66a65bde412751a3f1fa6e7d9acb253
+  metadata.gz: 3721b89f933f47cf9535718c3d35a1a2cc5664c3eccbb728a39494473f5e8c7411a33fd0171d204501a200c3b6074dea29b92384b97cb3274b69d4cc12511d73
+  data.tar.gz: eff5c5cce4953dcaca174fc0d51d682cbc811250f3b30090679bdce78821599c74c625c04a46bccc37feeab78032b7cc92e15f4bf3d52b8f11efc67e812b385b

data/.travis.yml

@@ -1,16 +1,18 @@
 language: ruby
 rvm:
-  - "2.0.0"
-  - "2.1.1"
-  - "2.2.4"
-  - "2.3.0"
+  - "2.0.0-p648"
+  - "2.1.10"
+  - "2.2.6"
+  - "2.3.3"
+  - "2.4.0"
 
 matrix:
   allow_failures:
-    - rvm: "2.3.0"
-    - rvm: "2.2.4"
+    - rvm: "2.3.3"
+    - rvm: "2.2.6"
+    - rvm: "2.4.0"
 
-script: "bundle exec rspec"
+script: "bundle exec rake"
 
 notifications:
   irc: "irc.freenode.org#ndlib"

data/LICENSE

@@ -1,16 +1,201 @@
-##########################################################################
-#
-# Copyright 2014 Notre Dame
-# Additional copyright may be held by others, as reflected in the commit log
-#
-# Licensed under the Apache License, Version 2.0 (the "License");
-# you may not use this file except in compliance with the License.
-# You may obtain a copy of the License at
-#
-#     http://www.apache.org/licenses/LICENSE-2.0
-#
-# Unless required by applicable law or agreed to in writing, software
-# distributed under the License is distributed on an "AS IS" BASIS,
-# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-# See the License for the specific language governing permissions and
-# limitations under the License.
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data/Rakefile

@@ -1 +1,47 @@
 require "bundler/gem_tasks"
+
+begin
+  require 'rspec/core/rake_task'
+  RSpec::Core::RakeTask.new(:spec) do |t|
+    t.pattern = "./spec/**/*_spec.rb"
+    ENV['COVERAGE'] = 'true'
+  end
+  task default: :spec
+rescue LoadError
+  $stdout.puts "RSpec failed to load; You won't be able to run tests."
+end
+
+namespace :commitment do
+  task :configure_test_for_code_coverage do
+    ENV['COVERAGE'] = 'true'
+  end
+  desc "Check for code that can go faster"
+  task :fasterer do
+    require 'fasterer/file_traverser'
+    file_traverser = Fasterer::FileTraverser.new(nil)
+    file_traverser.traverse
+    if file_traverser.offenses_found?
+      $stderr.puts "You can make the code go faster, see above. You can add exceptions in .fasterer.yml"
+      abort
+    end
+  end
+  task :code_coverage do
+    require 'json'
+    # Our goal is to stay at this coverage level or higher; As the level increases, we bump up the goal
+    COVERAGE_GOAL = 95
+    $stdout.puts "Checking code_coverage"
+    lastrun_filename = File.expand_path('../coverage/.last_run.json', __FILE__)
+    if File.exist?(lastrun_filename)
+      coverage_percentage = JSON.parse(File.read(lastrun_filename)).fetch('result').fetch('covered_percent').to_i
+      if coverage_percentage < COVERAGE_GOAL
+        abort("ERROR: Code Coverage Goal Not Met:\n\t#{coverage_percentage}%\tExpected\n\t#{COVERAGE_GOAL}%\tActual")
+      else
+        $stdout.puts "Code Coverage Goal Met (#{COVERAGE_GOAL}%)"
+      end
+    else
+      abort "Expected #{lastrun_filename} to exist for code coverage"
+    end
+  end
+end
+
+task(default: ['commitment:configure_test_for_code_coverage', :spec, 'commitment:code_coverage'])

data/bin/csv_to_rof

@@ -22,5 +22,4 @@ end
 
 STDIN.set_encoding("UTF-8")
 csv_contents = STDIN.read
-rof = ROF::TranslateCSV.run(csv_contents)
-puts JSON.pretty_generate(rof)
+ROF::Translators.csv_to_rof(csv_contents, {}, STDOUT)

data/bin/fedora_to_rof

@@ -54,4 +54,10 @@ if fedora_info == nil || pids.empty? then
 end
 
 # perform conversion
-ROF::CLI.convert_to_rof(pids, fedora_info, file_path, config)
+begin
+  config[:fedora_connection_information] = fedora_info
+  ROF::CLI.fedora_to_rof(pids, config, file_path)
+rescue => e
+  STDERR.puts "ERROR: #{e}"
+  exit 1
+end

data/bin/jsonld_to_rof

@@ -0,0 +1,26 @@
+#!/usr/bin/env ruby -Ilib
+
+require 'rof'
+require 'optparse'
+require 'json'
+
+opt = OptionParser.new do |opts|
+  opts.banner = %q{Usage: jsonld_to_rof
+  Reads a JSON-LD file from stdin.
+  Writes a ROF file to stdout.
+
+  In case of an error, a message is written to stderr and the program
+  exits with a non-zero status.
+}
+end
+
+opt.parse!
+
+if ARGV.length != 0
+  abort opt.help
+end
+
+STDIN.set_encoding("UTF-8")
+file_contents = STDIN.read
+jsonld = JSON.parse(file_contents)
+ROF::CLI.jsonld_to_rof(jsonld, {}, STDOUT)

data/bin/osf_to_rof

@@ -10,11 +10,12 @@ file_path = STDOUT
 config['project_file'] = './osf_projects'
 config['package_dir'] = './FROM_OSF'
 config['output_dir'] = '.'
+config['solr_url'] = 'http://localhost:8080/solr'
 
 # parse the command line
 #
 opt = OptionParser.new do |opts|
-  opts.banner = %q{Usage: osf_to_rof --projectfile file --packagedir DIR  --outputdir DIR 
+  opts.banner = %q{Usage: osf_to_rof --solr_url --projectfile file --packagedir DIR  --outputdir DIR
 }
 
   opts.on("", "--project_file project_file", "osf_projects file provided by requestor (required)") do |project_file|
@@ -26,6 +27,9 @@ opt = OptionParser.new do |opts|
   opts.on("", "--output_dir output_dir", "Directory to save ROF to (defaults to .)") do |output_dir|
     config['output_dir'] = output_dir
   end
+  opts.on("", "--solr_url solr_url", "URL of  SOLR to use  (defaults to http://localhost:8080/solr)") do |solr_url|
+    config['solr_url'] = solr_url
+  end
 end
 
 opt.parse!
@@ -37,4 +41,4 @@ if  !FileTest.exists?(config['project_file']) then
 end
 
 # perform conversion
-ROF::CLI.osf_to_rof(config)
+ROF::CLI.osf_to_rof(config['project_file'], config)

data/bin/rof

@@ -47,30 +47,16 @@ fedora_info = nil if fedora_info.empty?
 
 case ARGV[0]
 when "compare"
-  error_count = ROF::CLI.compare_files(ARGV[1], ARGV[2], STDOUT, fedora_info, bendo_info)
+  error_count = ROF::CLI.compare_files(ARGV[1], ARGV[2], STDOUT)
   exit 1 if error_count > 0
 when "ingest", "validate"
   error_count = ROF::CLI.ingest_file(ARGV[1], search_path, STDOUT, fedora_info, bendo_info)
   exit 1 if error_count > 0
 when "filter"
-  filter = case ARGV[1]
-           when "bendo"
-             ROF::Filters::Bendo.new(bendo_info)
-           when "collections"
-             ROF::Filters::Collections.new
-           when "datestamp"
-             ROF::Filters::DateStamp.new
-           when "file-to-url"
-             ROF::Filters::FileToUrl.new
-           when "label"
-             ROF::Filters::Label.new(prefix, noids)
-           when "work"
-             ROF::Filters::Work.new
-           else
-             STDERR.puts "Unknown filter #{ARGV[1]}"
-             exit 3
-           end
-  ROF::CLI.filter_file(filter, ARGV[2], STDOUT)
+  filter_name = ARGV[1]
+  file_name = ARGV[2]
+  filter = ROF::Filters.for(filter_name, file_name: file_name, bendo_info: bendo_info, prefix: prefix, noids: noids)
+  ROF::CLI.filter_file(filter, file_name, STDOUT)
 else
   STDERR.puts "Unknown command #{ARGV[0]}"
   STDERR.puts opt.help

data/lib/rof.rb

@@ -5,12 +5,8 @@ require "rof/access"
 require "rof/collection"
 require "rof/utility"
 require "rof/rdf_context"
-require "rof/translate_csv"
-require "rof/filters/date_stamp"
-require "rof/filters/file_to_url"
-require "rof/filters/label"
-require "rof/filters/work"
-require "rof/filters/bendo"
+require "rof/translators"
+require "rof/filters"
 
 module ROF
 end

data/lib/rof/access.rb

@@ -1,6 +1,6 @@
 module ROF
   # provide translation between access strings and the ROF access hash
-  # e.g. ("public", owner=dbrower) --> {read-groups: "public", edit: "dbrower"}
+  # e.g. ("public", owner=dbrower) --> Hash.new(read-groups: "public", edit: "dbrower")
   class Access
     class DecodeError < RuntimeError
     end

data/lib/rof/cli.rb

@@ -4,8 +4,8 @@ require 'json'
 require 'rubydora'
 require 'rof/ingest'
 require 'rof/collection'
-require 'rof/get_from_fedora'
-require 'rof/osf_to_rof'
+require 'rof/translators'
+require 'rof/utility'
 module ROF
   module CLI
     # Ingest the file `fname` that is a level 0 rof file. It may contain any
@@ -19,104 +19,141 @@ module ROF
     #
     # Returns the number of errors.
     def self.ingest_file(fname, search_paths = [], outfile = STDOUT, fedora = nil, bendo = nil)
-      items = load_items_from_file(fname, outfile)
+      items = ROF::Utility.load_items_from_json_file(fname, outfile)
       ingest_array(items, search_paths, outfile, fedora, bendo)
     end
 
+    # @param [NilClass, String, #write] outfile - where should we write things
+    # @see .with_outfile_handling for details on outfile
     def self.ingest_array(items, search_paths = [], outfile = STDOUT, fedora = nil, bendo = nil)
-      need_close = false
-      if outfile.nil?
-        outfile = File.open('/dev/null', 'w')
-        need_close = true
-      end
       fedora = Rubydora.connect(fedora) if fedora
       item_count = 1
       error_count = 0
       verb = fedora.nil? ? 'Verifying' : 'Ingesting'
-      overall_benchmark = Benchmark.measure do
-        items.each do |item|
-          begin
-            outfile.write("#{item_count}. #{verb} #{item['pid']} ...")
-            item_count += 1
-            individual_benchmark = Benchmark.measure do
-              ROF.Ingest(item, fedora, search_paths, bendo)
-            end
-            outfile.write("ok. %0.3fs\n" % individual_benchmark.real)
-          rescue Exception => e
-            error_count += 1
-            outfile.write("error. #{e}\n")
-            # TODO(dbrower): add option to toggle displaying backtraces
-            if e.backtrace
-              outfile.write(e.backtrace.join("\n\t"))
-              outfile.write("\n")
+      with_outfile_handling(outfile) do |writer|
+        overall_benchmark = Benchmark.measure do
+          items.each do |item|
+            begin
+              writer.write("#{item_count}. #{verb} #{item['pid']} ...")
+              item_count += 1
+              individual_benchmark = Benchmark.measure do
+                ROF.Ingest(item, fedora, search_paths, bendo)
+              end
+              writer.write("ok. %0.3fs\n" % individual_benchmark.real)
+            rescue Exception => e
+              error_count += 1
+              writer.write("error. #{e}\n")
+              # TODO(dbrower): add option to toggle displaying backtraces
+              if e.backtrace
+                writer.write(e.backtrace.join("\n\t"))
+                writer.write("\n")
+              end
             end
           end
         end
+        writer.write("Total time %0.3fs\n" % overall_benchmark.real)
+        writer.write("#{error_count} errors\n")
       end
-      outfile.write("Total time %0.3fs\n" % overall_benchmark.real)
-      outfile.write("#{error_count} errors\n")
       error_count
-    ensure
-      outfile.close if outfile && need_close
     end
 
+    # Responsible for loading the given :fname into an array of items, the processing
+    # those items via the :filter, and finally writing results to the :output
+    #
+    # @param [#process] filter - the object that processes the items loaded from the fname
+    # @param [String] fname - the filename from which to load items
+    # @param [NilClass, String, #write] outfile - where should we write things
+    # @see .with_outfile_handling for details on outfile
+    # @return void
     def self.filter_file(filter, fname, outfile = STDOUT)
-      items = load_items_from_file(fname, STDERR)
-      filter_array(filter, items, fname, outfile)
+      items = ROF::Utility.load_items_from_json_file(fname, STDERR)
+      result = filter.process(items)
+      with_outfile_handling(outfile) do |writer|
+        writer.write(JSON.pretty_generate(result))
+      end
     end
 
-    def self.filter_array(filter, items, fname, outfile = STDOUT)
-      # filter will transform the items array in place
-      result = filter.process(items, fname)
-      outfile.write(JSON.pretty_generate(result))
+    # convert OSF archive tar.gz to rof file
+    # @param [String] project_file - The path to the OSF Project file
+    # @param [Hash] config
+    # @param [NilClass, String, #write] outfile - where should we write things
+    # @see .with_outfile_handling for details on outfile
+    def self.osf_to_rof(project_file, config = {}, outfile = STDOUT)
+      osf_projects = ROF::Utility.load_items_from_json_file(project_file, outfile)
+      result = ROF::Translators::OsfToRof.call(osf_projects[0], config)
+      with_outfile_handling(outfile) do |writer|
+        writer.write(JSON.pretty_generate(result))
+      end
     end
 
-    # retrieve fedora object and convert to ROF
-    def self.convert_to_rof(pids, fedora = nil, outfile = STDOUT, config = {})
-      need_close = false
-      # use outfile is_a String
-      if outfile.is_a?(String)
-        outfile = File.open(outfile, 'w')
-        need_close = true
+    # Convert the given fedora PIDs to ROF JSON document
+    # @param [Array] pids - The path to the OSF Project file
+    # @param [Hash] config
+    # @param [NilClass, String, #write] outfile - where should we write things
+    # @see .with_outfile_handling for details on outfile
+    def self.fedora_to_rof(pids, config = {}, outfile = STDOUT)
+      result = ROF::Translators::FedoraToRof.call(pids, config)
+      with_outfile_handling(outfile) do |writer|
+        writer.write(JSON.pretty_generate(result))
       end
+    end
 
-      # wrap the objects inside a JSON list
-      result = []
-      pids.each do |pid|
-        result << ROF::FedoraToRof.GetFromFedora(pid, fedora, config)
+    # Convert the given CSV to ROF JSON document
+    # @param [String] csv - The contents of a CSV file
+    # @param [Hash] config
+    # @param [NilClass, String, #write] outfile - where should we write things
+    # @see .with_outfile_handling for details on outfile
+    # @see ROF::Translators::CsvToRof.call
+    def self.csv_to_rof(csv, config = {}, outfile = STDOUT)
+      result = ROF::Translators::CsvToRof.call(csv, config)
+      with_outfile_handling(outfile) do |writer|
+        writer.write(JSON.pretty_generate(result))
       end
-      outfile.write(JSON.pretty_generate(result))
-    ensure
-      outfile.close if outfile && need_close
     end
 
-    # convert OSF archive tar.gz to rof file
-    def self.osf_to_rof(config, outfile = STDOUT)
-      osf_projects = load_items_from_file(config['project_file'], outfile) if config.key?('project_file')
-      rof_data = ROF::OsfToRof.osf_to_rof(config, osf_projects[0])
-      outfile.write(JSON.pretty_generate(rof_data))
+    # Convert the given JSON-LD to ROF JSON document
+    # @param [Hash] jsonld - contents of a CSV file
+    # @param [Hash] config
+    # @param [NilClass, String, #write] outfile - where should we write things
+    # @see .with_outfile_handling for details on outfile
+    # @see ROF::Translators::JsonldToRof.call
+    def self.jsonld_to_rof(jsonld, config = {}, outfile = STDOUT)
+      result = ROF::Translators::JsonldToRof.call(jsonld, config)
+      with_outfile_handling(outfile) do |writer|
+        writer.write(JSON.pretty_generate(result))
+      end
     end
 
     # compare two rofs
-    def self.compare_files(file1, file2, outfile = STDOUT, _fedora, _bendo)
-      fedora_rof = load_items_from_file(file1, outfile)
-      bendo_rof =  load_items_from_file(file2, outfile)
+    # @param [String] file1 - path to "left" file in the comparison
+    # @param [String] file2 - path to "right" file in the comparison
+    # @param [#write] outfile - where to write any errors (default STDOUT)
+    # @return [Integer] number of comparisons that failed. If 0, then the two given files are logically equal
+    # @todo Should the outfile default to STDERR
+    def self.compare_files(file1, file2, outfile = STDOUT)
+      fedora_rof = ROF::Utility.load_items_from_json_file(file1, outfile)
+      bendo_rof =  ROF::Utility.load_items_from_json_file(file2, outfile)
 
       ROF::CompareRof.fedora_vs_bendo(fedora_rof, bendo_rof, outfile)
     end
 
-    protected
-
-    def self.load_items_from_file(fname, outfile)
-      items = nil
-      File.open(fname, 'r:UTF-8') do |f|
-        items = JSON.parse(f.read)
+    # Provides a normalized handling of outfiles:
+    #
+    # @param [NilClass, String, #write] outfile - The IO point that we will write to
+    # @yieldparam [#write] writer - An object that can be written to
+    def self.with_outfile_handling(outfile)
+      need_close = false
+      # use outfile is_a String
+      if outfile.is_a?(String)
+        outfile = File.open(outfile, 'w')
+        need_close = true
+      elsif outfile.nil?
+        outfile = File.open('/dev/null', 'w')
+        need_close = true
       end
-      items = [items] unless items.is_a? Array
-      items
-    rescue JSON::ParserError => e
-      outfile.puts("Error reading #{fname}:#{e}")
-      exit!(1)
+      yield(outfile)
+    ensure
+      outfile.close if outfile && (need_close || outfile.respond_to?(:close))
     end
   end
 end