rof 1.0.7 → 1.2.0

data/lib/rof/utility.rb

@@ -1,5 +1,6 @@
 require 'mime-types'
 require 'zlib'
+require 'rsolr'
 require 'rubygems/package'
 
 module ROF
@@ -63,13 +64,55 @@ module ROF
       s
     end
 
+    # test for embargo xml cases
+    def self.has_embargo_date?(embargo_xml)
+      return false if embargo_xml == '' || embargo_xml.nil?
+      return false unless embargo_xml.elements['machine'].has_elements? && embargo_xml.elements['machine'].elements['date'].has_text?
+      true
+    end
+
+    # @api public
+    # @param fname [String] Path to filename
+    # @param outfile [#puts] Where to write exceptions
+    # @return [Array] The items in the JSON document, coerced into an Array (if a single item was encountered)
+    def self.load_items_from_json_file(fname, outfile = STDERR)
+      items = nil
+      File.open(fname, 'r:UTF-8') do |f|
+        items = JSON.parse(f.read)
+      end
+      items = [items] unless items.is_a? Array
+      items
+    rescue JSON::ParserError => e
+      outfile.puts("Error reading #{fname}:#{e}")
+      exit!(1)
+    end
+
+    # query SOLR for Previous version of OSF Project.
+    # Return its fedora pid if it is found, nil otherwise
+    def self.check_solr_for_previous(config, osf_project_identifier)
+      solr_url = config.fetch('solr_url', nil)
+      return nil if solr_url.nil?
+      solr = RSolr.connect url: "#{solr_url}/curatend"
+      query = solr.get 'select', params: {
+        q: "desc_metadata__osf_project_identifier_ssi:#{osf_project_identifier}",
+        rows: 1,
+        sort_by: 'date_archived',
+        fl: ['id'],
+        wt: 'json'
+      }
+      return nil if (query['response']['numFound']).zero?
+      # should only be 1 SOLR doc (the most recent) in docs[0]
+      query['response']['docs'][0]['id']
+    end
+
     # read file from gzipped tar archive
     def self.file_from_targz(targzfile, file_name)
       File.open(targzfile, 'rb') do |file|
         Zlib::GzipReader.wrap(file) do |gz|
           Gem::Package::TarReader.new(gz) do |tar|
             tar.seek(file_name) do |file_entry|
-              file_dest_dir = File.join(File.dirname(targzfile), File.dirname(file_entry.full_name))
+              file_dest_dir = File.join(File.dirname(targzfile),
+                                        File.dirname(file_entry.full_name))
               FileUtils.mkdir_p(file_dest_dir)
               File.open(File.join(file_dest_dir, File.basename(file_name)), 'wb') do |file_handle|
                 file_handle.write(file_entry.read)

data/lib/rof/version.rb

@@ -1,3 +1,3 @@
 module ROF
-  VERSION="1.0.7"
+  VERSION="1.2.0"
 end

data/rof.gemspec

@@ -22,22 +22,30 @@ Gem::Specification.new do |spec|
 
   spec.add_dependency "rdf", "~> 2.0.1"
   spec.add_dependency "rdf-rdfxml"
-  spec.add_dependency "rdf-turtle"
+  # constrain rdf-turtle since the newer version wants rdf 2.2
+  spec.add_dependency "rdf-turtle", '~> 2.0.0'
   spec.add_dependency "rdf-isomorphic"
   spec.add_dependency "json-ld", "~> 2.0.0"
   spec.add_dependency "mime-types", "~> 2.4"
   spec.add_dependency "rubydora", "~> 1.8.1"
   spec.add_dependency "noids_client"
+  spec.add_dependency "rsolr"
   spec.add_dependency 'deprecation', '~> 0.1'
+  spec.add_dependency 'nokogiri', '~> 1.6.8.1' # Need this version for older rubies
   # only needed because we use ruby < 2.2.2 in production and that doesn't play
   # nice with rails 5
   spec.add_dependency 'activesupport', '< 5.0'
-  spec.add_dependency 'ebnf', '< 1.0.2' 
+  spec.add_dependency 'ebnf', '< 1.0.2'
+  # adding this only because bundler selects version 2.1 and it breaks things
+  spec.add_dependency 'rdf-xsd', '~> 2.0.0'
 
   spec.add_development_dependency "bundler", "~> 1.3"
+  spec.add_development_dependency "codeclimate-test-reporter"
+  spec.add_development_dependency "fasterer"
   spec.add_development_dependency "rake"
   spec.add_development_dependency 'rspec'
   spec.add_development_dependency 'rspec-its'
+  spec.add_development_dependency "simplecov"
   spec.add_development_dependency 'vcr'
   spec.add_development_dependency 'webmock'
   spec.add_development_dependency 'equivalent-xml'

data/spec/coverage_helper.rb

@@ -0,0 +1,17 @@
+## Generation Notes:
+##   This file was generated via the commitment:install generator. You are free
+##   and expected to change this file.
+if ENV['COV'] || ENV['COVERAGE'] || ENV['TRAVIS']
+  if ENV['TRAVIS']
+    require 'simplecov'
+    require "codeclimate-test-reporter"
+    SimpleCov.start do
+      formatter(
+        SimpleCov::Formatter::MultiFormatter.new([SimpleCov::Formatter::HTMLFormatter, CodeClimate::TestReporter::Formatter])
+      )
+    end
+  elsif ENV['COV'] || ENV['COVERAGE']
+    require 'simplecov'
+    SimpleCov.start
+  end
+end

data/spec/fixtures/for_utility_load_items_from_json_file/multiple_items.json

@@ -0,0 +1,8 @@
+[
+  {
+    "hello": "world"
+  },
+  {
+    "good": "bye"
+  }
+]

data/spec/fixtures/for_utility_load_items_from_json_file/parse_error.json

@@ -0,0 +1,3 @@
+{
+  'hello': 'world'
+}

data/spec/fixtures/for_utility_load_items_from_json_file/single_item.json

@@ -0,0 +1,3 @@
+{
+  "hello": "world"
+}

data/spec/fixtures/jsonld_to_rof/0g354f18610.jsonld

@@ -0,0 +1,113 @@
+{
+  "@context": {
+    "und": "https://curate.nd.edu/show/",
+    "bibo": "http://purl.org/ontology/bibo/",
+    "dc": "http://purl.org/dc/terms/",
+    "ebucore": "http://www.ebu.ch/metadata/ontologies/ebucore/ebucore#",
+    "foaf": "http://xmlns.com/foaf/0.1/",
+    "mrel": "http://id.loc.gov/vocabulary/relators/",
+    "nd": "https://library.nd.edu/ns/terms/",
+    "rdfs": "http://www.w3.org/2000/01/rdf-schema#",
+    "vracore": "http://purl.org/vra/",
+    "frels": "info:fedora/fedora-system:def/relations-external#",
+    "ms": "http://www.ndltd.org/standards/metadata/etdms/1.1/",
+    "pav": "http://purl.org/pav/",
+    "fedora-model": "info:fedora/fedora-system:def/model#",
+    "hydra": "http://projecthydra.org/ns/relations#",
+    "hasModel": {
+      "@id": "fedora-model:hasModel",
+      "@type": "@id"
+    },
+    "hasEditor": {
+      "@id": "hydra:hasEditor",
+      "@type": "@id"
+    },
+    "hasEditorGroup": {
+      "@id": "hydra:hasEditorGroup",
+      "@type": "@id"
+    },
+    "isPartOf": {
+      "@id": "frels:isPartOf",
+      "@type": "@id"
+    },
+    "isMemberOfCollection": {
+      "@id": "frels:isMemberOfCollection",
+      "@type": "@id"
+    },
+    "isEditorOf": {
+      "@id": "hydra:isEditorOf",
+      "@type": "@id"
+    },
+    "hasMember": {
+      "@id": "frels:hasMember",
+      "@type": "@id"
+    },
+    "previousVersion": "pav:previousVersion"
+  },
+  "@graph": [{
+    "@id": "_:b0",
+    "dc:contributor": "Maura Ryan",
+    "ms:role": "Research Director"
+  }, {
+    "@id": "_:b1",
+    "dc:contributor": "Jean Porter",
+    "ms:role": "Committee Member"
+  }, {
+    "@id": "_:b2",
+    "dc:contributor": "David Clairmont",
+    "ms:role": "Committee Member"
+  }, {
+    "@id": "_:b3",
+    "dc:contributor": "Andrew S. Park",
+    "ms:role": "Committee Member"
+  }, {
+    "@id": "_:b4",
+    "ms:discipline": ["Philosophy"],
+    "ms:level": "Doctoral Dissertation",
+    "ms:name": "Doctor of Philosophy"
+  }, {
+    "@id": "und:0g354f18610",
+    "dc:contributor": [{
+      "@id": "_:b0"
+    }, {
+      "@id": "_:b1"
+    }, {
+      "@id": "_:b2"
+    }, {
+      "@id": "_:b3"
+    }],
+    "dc:creator": "Joungeun Lee",
+    "dc:date": "2015-06-29",
+    "dc:date#created": "",
+    "dc:dateSubmitted": "2016-02-18Z",
+    "dc:description#abstract": "<p>The goal of this dissertation is to bring together in conversation Aquinas's thoughts on anger and the <i>han</i> (恨)-full anger as a culture-bound syndrome in South Korean people and society, and to make a constructive proposal for working with the anger of the <i>han</i>-filled. Aquinas' ontological cognitivist theory of passion and anger in particular provides a useful hermeneutical tool to analyze and articulate the inner structure of <i>han</i>-full anger and its moral character. The study of <i>han</i>-full anger offers Aquinas’s normative language of anger a chance to encounter the etymological and phenomenological reality of embodied anger and further the life of its bearer living in a marginalized life. Finally, Aquinas’s virtue ethics, taken together with <i>han</i> studies, suggests a modified way to work with the <i>han</i>-full anger. </p>",
+    "dc:description#note": "",
+    "dc:identifier#other": "",
+    "dc:modified": {
+      "@value": "2016-02-19Z",
+      "@type": "http://www.w3.org/2001/XMLSchema#date"
+    },
+    "dc:publisher#country": "",
+    "dc:rights": "All rights reserved",
+    "dc:title": "Anger in Thomas Aquinas and <i>Han</i>-full Anger",
+    "dc:title#alternate": "",
+    "hydra:hasEditor": {
+      "@id": "und:qb98mc9021z"
+    },
+    "hydra:hasEditorGroup": {
+      "@id": "und:q524jm23g92"
+    },
+    "ms:degree": {
+      "@id": "_:b4"
+    },
+    "nd:accessEdit": "curate_batch_user",
+    "nd:accessEmbargoDate": "2016-02-28",
+    "nd:accessRead": "jlee20",
+    "nd:accessReadGroup": "public",
+    "nd:afmodel": "Etd",
+    "nd:depositor": "curate_batch_user",
+    "nd:representativeFile": {
+      "@id": "und:rv042r3997b"
+    }
+  }]
+}

data/spec/fixtures/jsonld_to_rof/0g354f18610.rof

@@ -0,0 +1,96 @@
+[
+  {
+    "type": "fobject",
+    "pid": "und:0g354f18610",
+    "af-model": "Etd",
+    "rights": {
+      "read": [
+        "jlee20"
+      ],
+      "edit": [
+        "curate_batch_user"
+      ],
+      "read-groups": [
+        "public"
+      ],
+      "embargo-date": "2016-02-28",
+      "edit-groups": [
+        "und:q524jm23g92"
+      ]
+    },
+    "metadata": {
+      "@context": {
+        "dc": "http://purl.org/dc/terms/",
+        "rdfs": "http://www.w3.org/2000/01/rdf-schema#",
+        "ms": "http://www.ndltd.org/standards/metadata/etdms/1.1/",
+        "ths": "http://id.loc.gov/vocabulary/relators/"
+      },
+      "dc:title#alternate": [
+
+      ],
+      "dc:subject": [
+
+      ],
+      "dc:description#abstract": [
+        "<p>The goal of this dissertation is to bring together in conversation Aquinas's thoughts on anger and the <i>han</i> (恨)-full anger as a culture-bound syndrome in South Korean people and society, and to make a constructive proposal for working with the anger of the <i>han</i>-filled. Aquinas' ontological cognitivist theory of passion and anger in particular provides a useful hermeneutical tool to analyze and articulate the inner structure of <i>han</i>-full anger and its moral character. The study of <i>han</i>-full anger offers Aquinas’s normative language of anger a chance to encounter the etymological and phenomenological reality of embodied anger and further the life of its bearer living in a marginalized life. Finally, Aquinas’s virtue ethics, taken together with <i>han</i> studies, suggests a modified way to work with the <i>han</i>-full anger. </p>"
+      ],
+      "dc:rights": [
+        "All rights reserved"
+      ],
+      "dc:language": [
+
+      ],
+      "dc:date": [
+        "2015-06-29"
+      ],
+      "dc:title": "Anger in Thomas Aquinas and <i>Han</i>-full Anger",
+      "dc:contributor": [
+        {
+          "dc:contributor": "Maura Ryan",
+          "ms:role": "Research Director"
+        },
+        {
+          "dc:contributor": "Jean Porter",
+          "ms:role": "Committee Member"
+        },
+        {
+          "dc:contributor": "David Clairmont",
+          "ms:role": "Committee Member"
+        },
+        {
+          "dc:contributor": "Andrew S. Park",
+          "ms:role": "Committee Member"
+        }
+      ],
+      "ms:degree": {
+        "ms:name": [
+          "Doctor of Philosophy"
+        ],
+        "ms:discipline": [
+          "Philosophy"
+        ],
+        "ms:level": "Doctoral Dissertation"
+      },
+      "dc:creator": [
+        "Joungeun Lee"
+      ],
+      "dc:dateSubmitted": "2016-02-18Z",
+      "dc:modified": "2016-02-19Z"
+    },
+    "rels-ext": {
+      "@context": {
+        "hydramata-rel": "http://projecthydra.org/ns/relations#"
+      },
+      "hydramata-rel:hasEditor": [
+        "und:qb98mc9021z"
+      ],
+      "hydramata-rel:hasEditorGroup": [
+        "und:q524jm23g92"
+      ]
+    },
+    "properties-meta": {
+      "mime-type": "text/xml"
+    },
+    "properties": "<fields><depositor>curate_batch_user</depositor><representative>und:rv042r3997b</representative></fields>"
+  }
+]

data/spec/fixtures/jsonld_to_rof/2j62s467216.jsonld

@@ -0,0 +1,113 @@
+{
+  "@context": {
+    "und": "https://curate.nd.edu/show/",
+    "bibo": "http://purl.org/ontology/bibo/",
+    "dc": "http://purl.org/dc/terms/",
+    "ebucore": "http://www.ebu.ch/metadata/ontologies/ebucore/ebucore#",
+    "foaf": "http://xmlns.com/foaf/0.1/",
+    "mrel": "http://id.loc.gov/vocabulary/relators/",
+    "nd": "https://library.nd.edu/ns/terms/",
+    "rdfs": "http://www.w3.org/2000/01/rdf-schema#",
+    "vracore": "http://purl.org/vra/",
+    "frels": "info:fedora/fedora-system:def/relations-external#",
+    "ms": "http://www.ndltd.org/standards/metadata/etdms/1.1/",
+    "pav": "http://purl.org/pav/",
+    "fedora-model": "info:fedora/fedora-system:def/model#",
+    "hydra": "http://projecthydra.org/ns/relations#",
+    "hasModel": {
+      "@id": "fedora-model:hasModel",
+      "@type": "@id"
+    },
+    "hasEditor": {
+      "@id": "hydra:hasEditor",
+      "@type": "@id"
+    },
+    "hasEditorGroup": {
+      "@id": "hydra:hasEditorGroup",
+      "@type": "@id"
+    },
+    "isPartOf": {
+      "@id": "frels:isPartOf",
+      "@type": "@id"
+    },
+    "isMemberOfCollection": {
+      "@id": "frels:isMemberOfCollection",
+      "@type": "@id"
+    },
+    "isEditorOf": {
+      "@id": "hydra:isEditorOf",
+      "@type": "@id"
+    },
+    "hasMember": {
+      "@id": "frels:hasMember",
+      "@type": "@id"
+    },
+    "previousVersion": "pav:previousVersion"
+  },
+  "@graph": [{
+    "@id": "_:b0",
+    "dc:contributor": "Brad S. Gregory",
+    "ms:role": "Research Director"
+  }, {
+    "@id": "_:b1",
+    "dc:contributor": "John Van Engen",
+    "ms:role": "Committee Member"
+  }, {
+    "@id": "_:b2",
+    "dc:contributor": "Margaret Meserve",
+    "ms:role": "Committee Member"
+  }, {
+    "@id": "_:b3",
+    "dc:contributor": "Thomas Kselman",
+    "ms:role": "Committee Member"
+  }, {
+    "@id": "_:b4",
+    "ms:discipline": ["History"],
+    "ms:level": "Doctoral Dissertation",
+    "ms:name": "Doctor of Philosophy"
+  }, {
+    "@id": "und:2j62s467216",
+    "dc:contributor": [{
+      "@id": "_:b0"
+    }, {
+      "@id": "_:b1"
+    }, {
+      "@id": "_:b2"
+    }, {
+      "@id": "_:b3"
+    }],
+    "dc:creator": "Christopher J. Lane",
+    "dc:date": "2015-06-10",
+    "dc:date#approved": "",
+    "dc:date#created": "",
+    "dc:dateSubmitted": "2016-02-18Z",
+    "dc:description#note": "",
+    "dc:identifier#other": "",
+    "dc:modified": {
+      "@value": "2016-02-19Z",
+      "@type": "http://www.w3.org/2001/XMLSchema#date"
+    },
+    "dc:publisher#country": "",
+    "dc:rights": "All rights reserved",
+    "dc:title": "The Diversity of Vocations: Choosing a State of Life in Early Modern France",
+    "dc:title#alternate": "",
+    "hydra:hasEditor": {
+      "@id": "und:qb98mc9021z"
+    },
+    "hydra:hasEditorGroup": {
+      "@id": "und:q524jm23g92"
+    },
+    "ms:degree": {
+      "@id": "_:b4"
+    },
+    "nd:accessEmbargoDate": "2021-12-31",
+    "nd:accessEdit": "curate_batch_user",
+    "nd:accessRead": "clane",
+    "nd:accessReadGroup": "public",
+    "nd:afmodel": "Etd",
+    "nd:depositor": "curate_batch_user",
+    "nd:representativeFile": {
+      "@id": "und:47429882s8w"
+    }
+  }]
+}