roboneuro 0.1.7 → 0.1.10

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA256:
-  metadata.gz: 178f8979297b26fe80f582a9e6e41e6dd4bdb4eb554fdf42fd7528d991f8efac
-  data.tar.gz: 5b7e8606cc13ac8019ca52e93ecb282e20595c751af9331d72e5b320da35f58a
+  metadata.gz: d6222b1286c8b93307f32a72b4732c7604aaa65d8468f0aade6039e8b4b4fe81
+  data.tar.gz: daf030e38d2271cdcb790d020e8daf15454f211ce86a9669dc3d8a2039d6ec0f
 SHA512:
-  metadata.gz: 93dcbf3a086abcd68d37754c5d4faa9ee8529eb0981b7f845d2fb8af9af803d9fe66eaf145ab739a5b8d0f18c3e7d585002216f171a2037e23a8a4020b0b7ca8
-  data.tar.gz: 723db9876f4f378f183533d2c4f17d14fc01e8f60643fa387c49eb6834f1fb6e2fc194d78e29cef3bba1345aa372f47eccf4906642b095007334fabe66beba65
+  metadata.gz: '039255053135989cd7699d9955f1928dcc1a15dbf7eee584f1852183023e25c2971dd63978f73ed76dd2a30a0f238cc5f2f0b0c47a6344315a7f238c3a3324fd'
+  data.tar.gz: aa7bcdbe4fd862a06302f841936c4304d8bda89c6d8977a66e5c4f5985edd7c30d33718d09a2bb653c742176c8af640d816058dc6514a42d8f712b28ddd9a727

data/Gemfile.lock

@@ -1,7 +1,7 @@
 PATH
   remote: .
   specs:
-    roboneuro (0.1.7)
+    roboneuro (0.1.10)
       bibtex-ruby (~> 6.0.0)
       dotenv
       github-linguist (~> 5.3)
@@ -30,29 +30,10 @@ GEM
       unf (>= 0.0.5, < 1.0.0)
     dotenv (2.7.6)
     escape_utils (1.1.1)
-    faraday (1.10.0)
-      faraday-em_http (~> 1.0)
-      faraday-em_synchrony (~> 1.0)
-      faraday-excon (~> 1.1)
-      faraday-httpclient (~> 1.0)
-      faraday-multipart (~> 1.0)
-      faraday-net_http (~> 1.0)
-      faraday-net_http_persistent (~> 1.0)
-      faraday-patron (~> 1.0)
-      faraday-rack (~> 1.0)
-      faraday-retry (~> 1.0)
+    faraday (2.3.0)
+      faraday-net_http (~> 2.0)
       ruby2_keywords (>= 0.0.4)
-    faraday-em_http (1.0.0)
-    faraday-em_synchrony (1.0.0)
-    faraday-excon (1.1.0)
-    faraday-httpclient (1.0.1)
-    faraday-multipart (1.0.3)
-      multipart-post (>= 1.2, < 3)
-    faraday-net_http (1.0.1)
-    faraday-net_http_persistent (1.2.0)
-    faraday-patron (1.0.0)
-    faraday-rack (1.0.0)
-    faraday-retry (1.0.3)
+    faraday-net_http (2.0.3)
     github-linguist (5.3.3)
       charlock_holmes (~> 0.7.5)
       escape_utils (~> 1.1.0)
@@ -60,7 +41,7 @@ GEM
       rugged (>= 0.25.1)
     hashdiff (1.0.1)
     http-accept (1.7.0)
-    http-cookie (1.0.4)
+    http-cookie (1.0.5)
       domain_name (~> 0.5)
     latex-decode (0.3.2)
     method_source (1.0.0)
@@ -68,13 +49,12 @@ GEM
       mime-types-data (~> 3.2015)
     mime-types-data (3.2022.0105)
     mini_portile2 (2.4.0)
-    multipart-post (2.1.1)
     netrc (0.11.0)
     nokogiri (1.10.8)
       mini_portile2 (~> 2.4.0)
-    octokit (4.22.0)
-      faraday (>= 0.9)
-      sawyer (~> 0.8.0, >= 0.5.3)
+    octokit (4.24.0)
+      faraday (>= 1, < 3)
+      sawyer (~> 0.9)
     openjournals-nameable (1.1.7)
     pry (0.13.1)
       coderay (~> 1.1)
@@ -103,14 +83,14 @@ GEM
     rspec-support (3.10.2)
     ruby2_keywords (0.0.5)
     rugged (1.4.3)
-    sawyer (0.8.2)
+    sawyer (0.9.2)
       addressable (>= 2.3.5)
-      faraday (> 0.8, < 2.0)
+      faraday (>= 0.17.3, < 3)
     thor (0.20.3)
     tilt (2.0.10)
     unf (0.1.4)
       unf_ext
-    unf_ext (0.0.8.1)
+    unf_ext (0.0.8.2)
     unicode (0.4.4.4)
     vcr (6.0.0)
     webmock (3.11.2)

data/lib/whedon/processor.rb

@@ -118,7 +118,9 @@ module Whedon
     end
 
     def deposit
+      puts "GEM - DEPOSITING CROSSREF"
       crossref_deposit
+      puts "GEM - DEPOSITING NEUROLIBRE"
       joss_deposit
 
       puts "p=dat #{@review_issue_id};p.doi='#{paper.formatted_doi}';"\

data/lib/whedon/version.rb

@@ -1,3 +1,3 @@
 module Whedon
-  VERSION = "0.1.7"
+  VERSION = "0.1.10"
 end

data/lib/whedon.rb

@@ -234,8 +234,11 @@ module Whedon
       "#{ENV['JOURNAL_ALIAS']}.#{id}"
     end
 
+    # HARDCODED 
+    # We run into a problem with domain registration for neurolibre.github.io/preperints 
+    # Therefore we decided to add neurolibre.github.io/preprints to xml metadata.
     def pdf_url
-      "http://neurolibre.org/#{paper_repo}/#{joss_id}/#{ENV['DOI_PREFIX']}.#{joss_id}.pdf"
+      "https://neurolibre.github.io/#{paper_repo}/#{joss_id}/#{ENV['DOI_PREFIX']}.#{joss_id}.pdf"
     end
 
     def paper_org
@@ -371,13 +374,6 @@ module Whedon
       "#{ENV['JOURNAL_URL']}/papers/#{formatted_doi}"
     end
 
-    # NeuroLibre journal URL and PDF urls are not identical. 
-    # To properly locate PDFs, the preprints repo is hardcoded below. 
-    def neurolibre_pdf_url
-      "https://neurolibre.github.io/preperints/#{formatted_doi}"
-      #"#{Rails.application.settings["papers_html_url"]}/#{joss_id}/#{doi_to_file}.pdf"
-    end
-
     # Return the Review object associated with the Paper
     def review_issue
       review = Whedon::Review.new(review_issue_id, review_repository)

data/resources/crossref.template

@@ -77,7 +77,7 @@
           <resource>$joss_resource_url$</resource>
           <collection property="text-mining">
             <item>
-              <resource mime_type="application/pdf">$joss_resource_url$.pdf</resource>
+              <resource mime_type="application/pdf">$paper_url$</resource>
             </item>
           </collection>
         </doi_data>

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: roboneuro
 version: !ruby/object:Gem::Version
-  version: 0.1.7
+  version: 0.1.10
 platform: ruby
 authors:
 - Agah Karakuzu
 autorequire:
 bindir: bin
 cert_chain: []
-date: 2022-06-02 00:00:00.000000000 Z
+date: 2022-06-10 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: bibtex-ruby