roboneuro 0.1.3 → 0.1.6

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA256:
-  metadata.gz: 8c5144858281c93c49bf4c84aa8fc29d298561539e10e3eb65adc45d0b60bc8f
-  data.tar.gz: a591afde7412ff24427f952ddb992ab6e2f629d78d4e1c8a46d0a2a1672ef79e
+  metadata.gz: 9aa647ce0e8e11588b02b420a4a5330fcb446d8f4beaabcf459b70494b164cfe
+  data.tar.gz: af598cb0098015d93fdf1f14ceda621c5689b711bad25100c7233a6071e0e76f
 SHA512:
-  metadata.gz: 01177b8a7791aab9f2b583b711e7057bb3637befdd53ba22dc2a4756f51f1918976e810ff649fce96cd4d51e685eeb8ab29375072cd003fabb814b65905b436d
-  data.tar.gz: 87a1b4fda0aadf51fedc64c4dd34e8ad09411297a4301bc962cca173a726cdf7603fc28c607c6c07a331e797cdb5e35a8fd331358fe18a6f3e4caf1e2f7592d3
+  metadata.gz: 80be1c276d6c72b64fd39815508796f4d02f3cd155ca7cd502a25bff638274b391e3813f2366ea9f47735c4624c87a1c8ad1a2537eeb466fa6c3a0d09ce97b9f
+  data.tar.gz: b8abf45080ce33e30bd912141fc9a972b8742373b34d46083ed1c7fb66d7463b9eb45f79bf64c57a523185679051116b0ae80ef4c9388c22a1f522562c2c1160

data/Gemfile.lock

@@ -1,7 +1,7 @@
 PATH
   remote: .
   specs:
-    roboneuro (0.1.3)
+    roboneuro (0.1.5)
       bibtex-ruby (~> 6.0.0)
       dotenv
       github-linguist (~> 5.3)

data/README.md

@@ -1,3 +1,5 @@
+Modified for NeuroLibre.
+
 # What is Whedon?
 
 Whedon is a collection of command-line utilities to manage JOSS submissions. Whedon is used by the [Whedon-API bot](https://github.com/openjournals/whedon-api) to interact with authors and reviewers during the review process on https://github.com/openjournals/joss-reviews

data/fixtures/paper/paper-single-author.md

@@ -5,8 +5,8 @@ tags:
   - tags
   - for the paper
 authors:
- - name: Agah Karakuzu
-   orcid: 0000-0001-7283-271X
+ - name: Arfon M Smith
+   orcid: 0000-0002-3957-2474
    affiliation: "1,2"
 affiliations:
  - name: GitHub Inc.

data/fixtures/paper/paper.md

@@ -5,8 +5,8 @@ tags:
   - tags
   - for the paper
 authors:
- - name: Agah Karakuzu
-   orcid: 0000-0001-7283-271X
+ - name: Arfon M Smith
+   orcid: 0000-0002-3957-2474
    affiliation: "1,2"
  - name: Mickey Mouse
    orcid: 0000-0002-3957-2474

data/lib/whedon/compilers.rb

@@ -114,7 +114,7 @@ module Compilers
     published = parsed['accepted']
 
     # TODO - remove this once JOSE has their editors hooked up in the system
-    if ENV['JOURNAL_ALIAS'] == "joss" && !paper.editor.nil?
+    if ENV['JOURNAL_ALIAS'] == "neurolibre" && !paper.editor.nil?
       editor_lookup_url = "#{ENV['JOURNAL_URL']}/editors/lookup/#{paper.editor}"
       response = RestClient.get(editor_lookup_url)
       parsed = JSON.parse(response)
@@ -227,7 +227,7 @@ module Compilers
     -V paper_url=#{paper.pdf_url} \
     -V joss_resource_url=#{paper.joss_resource_url} \
     -V journal_alias=#{ENV['JOURNAL_ALIAS']} \
-    -V journal_abbrev_title=#{ENV['JOURNAL_ALIAS'].upcase} \
+    -V journal_abbrev_title=#{ENV['JOURNAL_ABBRV_TITLE']} \
     -V journal_url=#{ENV['JOURNAL_URL']} \
     -V journal_name='#{ENV['JOURNAL_NAME']}' \
     -V journal_issn=#{ENV['JOURNAL_ISSN']} \
@@ -297,7 +297,7 @@ module Compilers
       "paper_url" => paper.pdf_url,
       "joss_resource_url" => paper.joss_resource_url,
       "journal_alias" => ENV['JOURNAL_ALIAS'],
-      "journal_abbrev_title" => ENV['JOURNAL_ALIAS'].upcase,
+      "journal_abbrev_title" => ENV['JOURNAL_ABBRV_TITLE'],
       "journal_url" => ENV['JOURNAL_URL'],
       "journal_name" => ENV['JOURNAL_NAME'],
       "journal_issn"=> ENV['JOURNAL_ISSN'],

data/lib/whedon/processor.rb

@@ -133,7 +133,8 @@ module Whedon
       puts "Depositing with JOSS..."
       request = RestClient::Request.new(
                 :method => :post,
-                :url => "#{ENV['JOURNAL_URL']}/papers/api_deposit",
+                :url => "http://neurolibre.herokuapp.com/papers/api_deposit",
+                verify_ssl: false,
                 :payload => {
                   :id => paper.review_issue_id,
                   :metadata => Base64.encode64(paper.deposit_payload.to_json),
@@ -149,6 +150,7 @@ module Whedon
                 })
 
       response = request.execute
+      puts response.body
       if response.code == 201
         puts "Deposit looks good."
       else
@@ -161,6 +163,7 @@ module Whedon
         puts "Depositing with Crossref..."
         request = RestClient::Request.new(
                   :method => :post,
+                  #:url => "https://test.crossref.org/servlet/deposit",
                   :url => "https://doi.crossref.org/servlet/deposit",
                   :payload => {
                     :multipart => true,
@@ -170,6 +173,7 @@ module Whedon
                   })
 
         response = request.execute
+        puts response.body
         if response.code == 200
           puts "Deposit looks good. Check your email!"
         else

data/lib/whedon/version.rb

@@ -1,3 +1,3 @@
 module Whedon
-  VERSION = "0.1.3"
+  VERSION = "0.1.6"
 end

data/lib/whedon.rb

@@ -185,6 +185,7 @@ module Whedon
       payload['paper']['data_doi'] = review_issue_body[ARCHIVE_DATA_REGEX].gsub('"', '')
       payload['paper']['book_doi'] = review_issue_body[ARCHIVE_BOOK_REGEX].gsub('"', '')
       payload['paper']['docker_doi'] = review_issue_body[ARCHIVE_DOCKER_REGEX].gsub('"', '')
+      payload['paper']['book_exec_url'] = review_issue_body[BOOK_EXEC_REGEX].gsub('"', '')
       payload['paper']['repository_address'] = review_issue_body[REPO_REGEX].gsub('"', '')
       payload['paper']['editor'] = "@#{editor}"
       payload['paper']['reviewers'] = reviewers.collect(&:strip)
@@ -234,7 +235,7 @@ module Whedon
     end
 
     def pdf_url
-      "http://www.theoj.org/#{paper_repo}/#{joss_id}/#{ENV['DOI_PREFIX']}.#{joss_id}.pdf"
+      "http://neurolibre.org/#{paper_repo}/#{joss_id}/#{ENV['DOI_PREFIX']}.#{joss_id}.pdf"
     end
 
     def paper_org

data/resources/{NeuroLibre → neurolibre}/latex.template

@@ -472,7 +472,7 @@ $endif$
   {\bfseries Editor:} \href{$editor_url$}{\color{red}$editor_name$} \ExternalLink \\
   \vspace{1mm}
   $if(reviewers)$
-  {\bfseries Reviewers:}
+  {\bfseries Reviewer(s):}
   \begin{itemize}
   \setlength\itemsep{0em}
   $for(reviewers)$

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: roboneuro
 version: !ruby/object:Gem::Version
-  version: 0.1.3
+  version: 0.1.6
 platform: ruby
 authors:
 - Agah Karakuzu
 autorequire:
 bindir: bin
 cert_chain: []
-date: 2022-04-19 00:00:00.000000000 Z
+date: 2022-04-20 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: bibtex-ruby
@@ -315,12 +315,6 @@ files:
 - lib/whedon/version.rb
 - paperdraft.Dockerfile
 - pkg/roboneuro-0.1.0.gem
-- resources/NeuroLibre/aas-logo.png
-- resources/NeuroLibre/apa.csl
-- resources/NeuroLibre/defaults.yaml
-- resources/NeuroLibre/latex.template
-- resources/NeuroLibre/logo.png
-- resources/NeuroLibre/logo_link.png
 - resources/apa.csl
 - resources/crossref.template
 - resources/docker-defaults.yaml
@@ -337,6 +331,12 @@ files:
 - resources/joss/latex.template
 - resources/joss/logo.png
 - resources/latex.template
+- resources/neurolibre/aas-logo.png
+- resources/neurolibre/apa.csl
+- resources/neurolibre/defaults.yaml
+- resources/neurolibre/latex.template
+- resources/neurolibre/logo.png
+- resources/neurolibre/logo_link.png
 - resources/time.lua
 - roboneuro.gemspec
 - spec/auditor_spec.rb