roboneuro 0.1.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +7 -0
- data/.DS_Store +0 -0
- data/.env-example +12 -0
- data/.env.test +8 -0
- data/.github/workflows/docker-image.yml +63 -0
- data/.github/workflows/tests.yml +28 -0
- data/.gitignore +3 -0
- data/Gemfile +3 -0
- data/Gemfile.lock +135 -0
- data/LICENSE +21 -0
- data/README.md +190 -0
- data/Rakefile +13 -0
- data/bin/whedon +131 -0
- data/fixtures/latex_paper/paper.tex +0 -0
- data/fixtures/paper/10.21105.jcon.00017.crossref.xml +88 -0
- data/fixtures/paper/crossref-metadata.yaml +34 -0
- data/fixtures/paper/paper-bib.md +27 -0
- data/fixtures/paper/paper-single-author.md +24 -0
- data/fixtures/paper/paper-with-harder-names.md +27 -0
- data/fixtures/paper/paper-with-missing-affiliations.md +21 -0
- data/fixtures/paper/paper.bib +65 -0
- data/fixtures/paper/paper.html +14 -0
- data/fixtures/paper/paper.md +27 -0
- data/fixtures/paper/paper.pdf +0 -0
- data/fixtures/paper/paper.xml +28 -0
- data/fixtures/paper/paper_with_missing_title.md +26 -0
- data/fixtures/review_body.txt +48 -0
- data/fixtures/test_paper/nested/paper.bib +0 -0
- data/fixtures/test_paper/nested/paper.md +0 -0
- data/fixtures/test_paper/paper.bib +0 -0
- data/fixtures/test_paper/paper.md +0 -0
- data/fixtures/vcr_cassettes/joss-lookup.yml +58 -0
- data/fixtures/vcr_cassettes/review.yml +237 -0
- data/fixtures/vcr_cassettes/reviews.yml +270 -0
- data/lib/whedon/auditor.rb +39 -0
- data/lib/whedon/author.rb +81 -0
- data/lib/whedon/bibtex_parser.rb +103 -0
- data/lib/whedon/compilers.rb +379 -0
- data/lib/whedon/github.rb +12 -0
- data/lib/whedon/orcid_validator.rb +83 -0
- data/lib/whedon/processor.rb +178 -0
- data/lib/whedon/review.rb +25 -0
- data/lib/whedon/reviews.rb +29 -0
- data/lib/whedon/version.rb +3 -0
- data/lib/whedon.rb +387 -0
- data/paperdraft.Dockerfile +48 -0
- data/pkg/roboneuro-0.1.0.gem +0 -0
- data/resources/.DS_Store +0 -0
- data/resources/NeuroLibre/.DS_Store +0 -0
- data/resources/NeuroLibre/aas-logo.png +0 -0
- data/resources/NeuroLibre/apa.csl +1919 -0
- data/resources/NeuroLibre/defaults.yaml +14 -0
- data/resources/NeuroLibre/latex.template +541 -0
- data/resources/NeuroLibre/logo.png +0 -0
- data/resources/NeuroLibre/logo_link.png +0 -0
- data/resources/apa.csl +1919 -0
- data/resources/crossref.template +89 -0
- data/resources/docker-defaults.yaml +42 -0
- data/resources/docker-entrypoint.sh +37 -0
- data/resources/jats.csl +204 -0
- data/resources/jats.template +105 -0
- data/resources/jose/apa.csl +1919 -0
- data/resources/jose/defaults.yaml +14 -0
- data/resources/jose/latex.template +486 -0
- data/resources/jose/logo.png +0 -0
- data/resources/joss/aas-logo.png +0 -0
- data/resources/joss/apa.csl +1919 -0
- data/resources/joss/defaults.yaml +14 -0
- data/resources/joss/latex.template +525 -0
- data/resources/joss/logo.png +0 -0
- data/resources/latex.template +485 -0
- data/resources/time.lua +8 -0
- data/roboneuro.gemspec +39 -0
- data/spec/auditor_spec.rb +22 -0
- data/spec/author_spec.rb +17 -0
- data/spec/bibtex_spec.rb +31 -0
- data/spec/orcid_validator_spec.rb +33 -0
- data/spec/processor_spec.rb +66 -0
- data/spec/review_spec.rb +12 -0
- data/spec/reviews_spec.rb +18 -0
- data/spec/spec_helper.rb +22 -0
- data/spec/whedon_spec.rb +93 -0
- metadata +386 -0
|
@@ -0,0 +1,88 @@
|
|
|
1
|
+
<?xml version="1.0" encoding="UTF-8"?>
|
|
2
|
+
<doi_batch xmlns="http://www.crossref.org/schema/4.4.0" xmlns:ai="http://www.crossref.org/AccessIndicators.xsd" xmlns:rel="http://www.crossref.org/relations.xsd" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" version="4.4.0" xsi:schemaLocation="http://www.crossref.org/schema/4.4.0 http://www.crossref.org/schemas/crossref4.4.0.xsd">
|
|
3
|
+
<head>
|
|
4
|
+
<doi_batch_id>439b146bff6f8003738cc5fe6fa9d767</doi_batch_id>
|
|
5
|
+
<timestamp>20190419111505</timestamp>
|
|
6
|
+
<depositor>
|
|
7
|
+
<depositor_name>JOSS Admin</depositor_name>
|
|
8
|
+
<email_address>admin@theoj.org</email_address>
|
|
9
|
+
</depositor>
|
|
10
|
+
<registrant>The Open Journal</registrant>
|
|
11
|
+
</head>
|
|
12
|
+
<body>
|
|
13
|
+
<journal>
|
|
14
|
+
<journal_metadata>
|
|
15
|
+
<full_title>Julia Conference Proceedings</full_title>
|
|
16
|
+
<abbrev_title>JCON</abbrev_title>
|
|
17
|
+
<issn media_type="electronic">2642-4029</issn>
|
|
18
|
+
<doi_data>
|
|
19
|
+
<doi>10.21105/jcon</doi>
|
|
20
|
+
<resource>https://pjc-proceedings.herokuapp.com/</resource>
|
|
21
|
+
</doi_data>
|
|
22
|
+
</journal_metadata>
|
|
23
|
+
<journal_issue>
|
|
24
|
+
<publication_date media_type="online">
|
|
25
|
+
<month>04</month>
|
|
26
|
+
<year>2019</year>
|
|
27
|
+
</publication_date>
|
|
28
|
+
<journal_volume>
|
|
29
|
+
<volume>1</volume>
|
|
30
|
+
</journal_volume>
|
|
31
|
+
<issue>1</issue>
|
|
32
|
+
</journal_issue>
|
|
33
|
+
<journal_article publication_type="full_text">
|
|
34
|
+
<titles>
|
|
35
|
+
<title>Fidgit: An ungodly union of GitHub and figshare</title>
|
|
36
|
+
</titles>
|
|
37
|
+
<contributors>
|
|
38
|
+
<person_name sequence="first" contributor_role="author">
|
|
39
|
+
<given_name>Arfon</given_name>
|
|
40
|
+
<surname>Smith</surname>
|
|
41
|
+
<ORCID>http://orcid.org/0000-0002-3957-2474</ORCID>
|
|
42
|
+
</person_name>
|
|
43
|
+
<person_name sequence="additional" contributor_role="author">
|
|
44
|
+
<given_name>Mickey</given_name>
|
|
45
|
+
<surname>Mouse</surname>
|
|
46
|
+
<ORCID>http://orcid.org/0000-0002-3957-2474</ORCID>
|
|
47
|
+
</person_name>
|
|
48
|
+
</contributors>
|
|
49
|
+
<publication_date>
|
|
50
|
+
<month>04</month>
|
|
51
|
+
<day>19</day>
|
|
52
|
+
<year>2019</year>
|
|
53
|
+
</publication_date>
|
|
54
|
+
<pages>
|
|
55
|
+
<first_page>17</first_page>
|
|
56
|
+
</pages>
|
|
57
|
+
<publisher_item>
|
|
58
|
+
<identifier id_type="doi">10.21105/jcon.00017</identifier>
|
|
59
|
+
</publisher_item>
|
|
60
|
+
<ai:program name="AccessIndicators">
|
|
61
|
+
<ai:license_ref applies_to="vor">http://creativecommons.org/licenses/by/4.0/</ai:license_ref>
|
|
62
|
+
<ai:license_ref applies_to="am">http://creativecommons.org/licenses/by/4.0/</ai:license_ref>
|
|
63
|
+
<ai:license_ref applies_to="tdm">http://creativecommons.org/licenses/by/4.0/</ai:license_ref>
|
|
64
|
+
</ai:program>
|
|
65
|
+
<rel:program>
|
|
66
|
+
<rel:related_item>
|
|
67
|
+
<rel:description>Software archive</rel:description>
|
|
68
|
+
<rel:inter_work_relation relationship-type="references" identifier-type="doi">http://dx.doi.org/10.5281/zenodo.13750</rel:inter_work_relation>
|
|
69
|
+
</rel:related_item>
|
|
70
|
+
<rel:related_item>
|
|
71
|
+
<rel:description>GitHub review issue</rel:description>
|
|
72
|
+
<rel:inter_work_relation relationship-type="hasReview" identifier-type="uri">https://github.com/JuliaCon/proceedings-review/issues/17</rel:inter_work_relation>
|
|
73
|
+
</rel:related_item>
|
|
74
|
+
</rel:program>
|
|
75
|
+
<doi_data>
|
|
76
|
+
<doi>10.21105/jcon.00017</doi>
|
|
77
|
+
<resource>https://pjc-proceedings.herokuapp.com//papers/10.21105/jcon.00017</resource>
|
|
78
|
+
<collection property="text-mining">
|
|
79
|
+
<item>
|
|
80
|
+
<resource mime_type="application/pdf">http://www.theoj.org/proceedings-papers/jcon.00017/10.21105.jcon.00017.pdf</resource>
|
|
81
|
+
</item>
|
|
82
|
+
</collection>
|
|
83
|
+
</doi_data>
|
|
84
|
+
<citation_list/>
|
|
85
|
+
</journal_article>
|
|
86
|
+
</journal>
|
|
87
|
+
</body>
|
|
88
|
+
</doi_batch>
|
|
@@ -0,0 +1,34 @@
|
|
|
1
|
+
---
|
|
2
|
+
timestamp: '20201102125108'
|
|
3
|
+
doi_batch_id: 284d9bf1426ea0f102dbc700e62c180e
|
|
4
|
+
formatted_doi: 10.21105/joss.00017
|
|
5
|
+
archive_doi: '"http://dx.doi.org/10.5281/zenodo.13750"'
|
|
6
|
+
review_issue_url: https://github.com/openjournals/joss-reviews/issues/17
|
|
7
|
+
paper_url: http://www.theoj.org/joss-papers/joss.00017/10.21105.joss.00017.pdf
|
|
8
|
+
joss_resource_url: http://joss.theoj.org/papers/10.21105/joss.00017
|
|
9
|
+
journal_alias: joss
|
|
10
|
+
journal_abbrev_title: JOSS
|
|
11
|
+
journal_url: http://joss.theoj.org
|
|
12
|
+
journal_name: Journal of Open Source Software
|
|
13
|
+
journal_issn: 2475-9066
|
|
14
|
+
month: 5
|
|
15
|
+
day: 11
|
|
16
|
+
year: 2016
|
|
17
|
+
issue: -53
|
|
18
|
+
volume: -3
|
|
19
|
+
page: 17
|
|
20
|
+
title: 'Fidgit: An ungodly union of GitHub and figshare'
|
|
21
|
+
crossref_authors: |-
|
|
22
|
+
<contributors>
|
|
23
|
+
<person_name sequence="first" contributor_role="author">
|
|
24
|
+
<given_name>Arfon</given_name>
|
|
25
|
+
<surname>Smith</surname>
|
|
26
|
+
<ORCID>http://orcid.org/0000-0002-3957-2474</ORCID>
|
|
27
|
+
</person_name>
|
|
28
|
+
<person_name sequence="additional" contributor_role="author">
|
|
29
|
+
<given_name>Mickey</given_name>
|
|
30
|
+
<surname>Mouse</surname>
|
|
31
|
+
<ORCID>http://orcid.org/0000-0002-3957-2474</ORCID>
|
|
32
|
+
</person_name>
|
|
33
|
+
</contributors>
|
|
34
|
+
citations: "<citation_list/>"
|
|
@@ -0,0 +1,27 @@
|
|
|
1
|
+
---
|
|
2
|
+
title: 'Fidgit: An ungodly union of GitHub and figshare'
|
|
3
|
+
tags:
|
|
4
|
+
- example
|
|
5
|
+
- tags
|
|
6
|
+
- for the paper
|
|
7
|
+
authors:
|
|
8
|
+
- name: Arfon M Smith
|
|
9
|
+
orcid: 0000-0002-3957-2474
|
|
10
|
+
affiliation: "1,2"
|
|
11
|
+
- name: Mickey Mouse
|
|
12
|
+
orcid: 0000-0002-3957-2474
|
|
13
|
+
affiliation: 2
|
|
14
|
+
affiliations:
|
|
15
|
+
- name: GitHub Inc.
|
|
16
|
+
index: 1
|
|
17
|
+
- name: Disney Inc.
|
|
18
|
+
index: 2
|
|
19
|
+
date: 14 February 2016
|
|
20
|
+
bibliography: weird-bib-path.bib
|
|
21
|
+
---
|
|
22
|
+
|
|
23
|
+
# Summary
|
|
24
|
+
|
|
25
|
+
This is a proof of concept integration between a GitHub [@GitHub] repo and figshare [@figshare] in an effort to get a DOI for a GitHub repository. When a repository is tagged for release on GitHub, Fidgit [@Fidgit] will import the release into figshare thus giving the code bundle a DOI. In a somewhat meta fashion, Fidgit is publishing itself to figshare with DOI 'http://dx.doi.org/10.6084/m9.figshare.828487' [@figshare_archive].
|
|
26
|
+
|
|
27
|
+
# References
|
|
@@ -0,0 +1,24 @@
|
|
|
1
|
+
---
|
|
2
|
+
title: 'Fidgit: An ungodly union of GitHub and figshare'
|
|
3
|
+
tags:
|
|
4
|
+
- example
|
|
5
|
+
- tags
|
|
6
|
+
- for the paper
|
|
7
|
+
authors:
|
|
8
|
+
- name: Arfon M Smith
|
|
9
|
+
orcid: 0000-0002-3957-2474
|
|
10
|
+
affiliation: "1,2"
|
|
11
|
+
affiliations:
|
|
12
|
+
- name: GitHub Inc.
|
|
13
|
+
index: 1
|
|
14
|
+
- name: Disney Inc.
|
|
15
|
+
index: 2
|
|
16
|
+
date: 14 February 2016
|
|
17
|
+
bibliography: paper.bib
|
|
18
|
+
---
|
|
19
|
+
|
|
20
|
+
# Summary
|
|
21
|
+
|
|
22
|
+
This is a proof of concept integration between a GitHub [@GitHub] repo and figshare [@figshare] in an effort to get a DOI for a GitHub repository. When a repository is tagged for release on GitHub, Fidgit [@Fidgit] will import the release into figshare thus giving the code bundle a DOI. In a somewhat meta fashion, Fidgit is publishing itself to figshare with DOI 'http://dx.doi.org/10.6084/m9.figshare.828487' [@figshare_archive].
|
|
23
|
+
|
|
24
|
+
# References
|
|
@@ -0,0 +1,27 @@
|
|
|
1
|
+
---
|
|
2
|
+
title: 'Fidgit: An ungodly union of GitHub and figshare'
|
|
3
|
+
tags:
|
|
4
|
+
- example
|
|
5
|
+
- tags
|
|
6
|
+
- for the paper
|
|
7
|
+
authors:
|
|
8
|
+
- name: "Dr Arfon M. Smith Esquire^[Corresponding author: arfon@example.com]"
|
|
9
|
+
orcid: 0000-0002-3957-2474
|
|
10
|
+
affiliation: "1,2"
|
|
11
|
+
- name: James P. van Dishoeck
|
|
12
|
+
orcid: 0000-0002-3957-2474
|
|
13
|
+
affiliation: 2
|
|
14
|
+
affiliations:
|
|
15
|
+
- name: GitHub Inc.
|
|
16
|
+
index: 1
|
|
17
|
+
- name: Disney Inc.
|
|
18
|
+
index: 2
|
|
19
|
+
date: 14 February 2016
|
|
20
|
+
bibliography: paper.bib
|
|
21
|
+
---
|
|
22
|
+
|
|
23
|
+
# Summary
|
|
24
|
+
|
|
25
|
+
This is a proof of concept integration between a GitHub [@GitHub] repo and figshare [@figshare] in an effort to get a DOI for a GitHub repository. When a repository is tagged for release on GitHub, Fidgit [@Fidgit] will import the release into figshare thus giving the code bundle a DOI. In a somewhat meta fashion, Fidgit is publishing itself to figshare with DOI 'http://dx.doi.org/10.6084/m9.figshare.828487' [@figshare_archive].
|
|
26
|
+
|
|
27
|
+
# References
|
|
@@ -0,0 +1,21 @@
|
|
|
1
|
+
---
|
|
2
|
+
title: 'Fidgit: An ungodly union of GitHub and figshare'
|
|
3
|
+
tags:
|
|
4
|
+
- example
|
|
5
|
+
- tags
|
|
6
|
+
- for the paper
|
|
7
|
+
authors:
|
|
8
|
+
- name: Arfon M Smith
|
|
9
|
+
orcid: 0000-0002-3957-2474
|
|
10
|
+
affiliations:
|
|
11
|
+
- name: GitHub Inc.
|
|
12
|
+
- name: Disney Inc.
|
|
13
|
+
date: 14 February 2016
|
|
14
|
+
bibliography: paper.bib
|
|
15
|
+
---
|
|
16
|
+
|
|
17
|
+
# Summary
|
|
18
|
+
|
|
19
|
+
This is a proof of concept integration between a GitHub [@GitHub] repo and figshare [@figshare] in an effort to get a DOI for a GitHub repository. When a repository is tagged for release on GitHub, Fidgit [@Fidgit] will import the release into figshare thus giving the code bundle a DOI. In a somewhat meta fashion, Fidgit is publishing itself to figshare with DOI 'http://dx.doi.org/10.6084/m9.figshare.828487' [@figshare_archive].
|
|
20
|
+
|
|
21
|
+
# References
|
|
@@ -0,0 +1,65 @@
|
|
|
1
|
+
@inproceedings{SWIFT07,
|
|
2
|
+
title={Swift: Fast, reliable, loosely coupled parallel computation},
|
|
3
|
+
author={Zhao, Yong and Hategan, Mihael and Clifford, Ben and Foster, Ian and Von Laszewski, Gregor and Nefedova, Veronika and Raicu, Ioan and Stef-Praun, Tiberiu and Wilde, Michael},
|
|
4
|
+
booktitle={IEEE Congress on Services},
|
|
5
|
+
pages={199--206},
|
|
6
|
+
year={2007},
|
|
7
|
+
organization={IEEE},
|
|
8
|
+
doi={10.1109/SERVICES.2007.63},
|
|
9
|
+
}
|
|
10
|
+
|
|
11
|
+
@article{SWIFT09,
|
|
12
|
+
author = {Wilde, Michael and Foster, Ian and Iskra, Kamil and Beckman, Pete and Zhang, Zhao and Espinosa, Allan and Hategan, Mihael and Clifford, Ben and Raicu, Ioan},
|
|
13
|
+
title = {Parallel Scripting for Applications at the Petascale and Beyond},
|
|
14
|
+
journal ={Computer},
|
|
15
|
+
volume = {42},
|
|
16
|
+
year = {2009},
|
|
17
|
+
pages = {50-60},
|
|
18
|
+
doi = {10/fm2vqj},
|
|
19
|
+
publisher = {IEEE Computer Society},
|
|
20
|
+
}
|
|
21
|
+
|
|
22
|
+
@ARTICLE{SWIFT11,
|
|
23
|
+
title = {Swift: {A} language for distributed parallel scripting},
|
|
24
|
+
author = {Michael Wilde and Mihael Hategan and Justin M. Wozniak
|
|
25
|
+
and Ben Clifford and Daniel S. Katz and Ian Foster},
|
|
26
|
+
journal = {Par. Comp.},
|
|
27
|
+
month = {September},
|
|
28
|
+
pages={633--652},
|
|
29
|
+
year = {2011},
|
|
30
|
+
doi={10.1016/j.parco.2011.05.005}
|
|
31
|
+
}
|
|
32
|
+
|
|
33
|
+
@article{PEGASUS05,
|
|
34
|
+
author = "E. Deelman and G. Singh and M.-H. Su and J. Blythe and Y. Gil and C. Kesselman and G. Mehta and K. Vahl and G. B. Berriman and J. Good and A. Laity and J. C. Jacob and D. S. Katz",
|
|
35
|
+
title = "Pegasus: A framework for mapping complex scientific workflows onto distributed systems",
|
|
36
|
+
journal = "Scientific Programming Journal",
|
|
37
|
+
volume = "13",
|
|
38
|
+
number = "3",
|
|
39
|
+
pages = "219--237",
|
|
40
|
+
year = "2005",
|
|
41
|
+
doi={10.1155/2005/128026},
|
|
42
|
+
}
|
|
43
|
+
|
|
44
|
+
@incollection{PEGASUS04,
|
|
45
|
+
author = {Deelman, Ewa and Blythe, James and Gil, Yolanda and Kesselman, Carl and Mehta, Gaurang and Patil, Sonal and Su, Mei-Hui and Vahi, Karan and Livny, Miron},
|
|
46
|
+
affiliation = {USC Information Sciences Institute, Marina Del Rey, CA 90292 },
|
|
47
|
+
title = {Pegasus: Mapping Scientific Workflows onto the Grid},
|
|
48
|
+
booktitle = {Grid Computing},
|
|
49
|
+
series = {Lect. Notes in Comp. Sci.},
|
|
50
|
+
editor = {Dikaiakos, Marios D.},
|
|
51
|
+
publisher = {Springer},
|
|
52
|
+
pages = {131-140},
|
|
53
|
+
volume = {3165},
|
|
54
|
+
year = {2004},
|
|
55
|
+
doi={10.1007/978-3-540-28642-4_2},
|
|
56
|
+
}
|
|
57
|
+
|
|
58
|
+
@article{AIMES15,
|
|
59
|
+
title={Integrating Abstractions to Enhance the Execution of Distributed Applications},
|
|
60
|
+
author={Turilli, Matteo and Zhang, Zhao and Merzky, Andre and Wilde, Michael and Weissman, Jon and Katz, Daniel S and Jha, Shantenu and others},
|
|
61
|
+
journal={arXiv preprint arXiv:1504.04720},
|
|
62
|
+
year={2015}
|
|
63
|
+
}
|
|
64
|
+
|
|
65
|
+
@comment{x-kbibtex-personnameformatting=<%l><, %f>}
|
|
@@ -0,0 +1,14 @@
|
|
|
1
|
+
<div id="refs" class="references">
|
|
2
|
+
<div id="ref-figshare">
|
|
3
|
+
<p>figshare. 2016. “Figshare - Credit for All Your Research.” <a href="https://figshare.com" class="uri">https://figshare.com</a>.</p>
|
|
4
|
+
</div>
|
|
5
|
+
<div id="ref-figshare_archive">
|
|
6
|
+
<p>figshare Archive. n.d. “Fidgit: An Ungodly Union of GitHub and Figshare.” <a href="http://dx.doi.org/10.6084/m9.figshare.828487" class="uri">http://dx.doi.org/10.6084/m9.figshare.828487</a>. doi:<a href="https://doi.org/10.6084/m9.figshare.828487">10.6084/m9.figshare.828487</a>.</p>
|
|
7
|
+
</div>
|
|
8
|
+
<div id="ref-GitHub">
|
|
9
|
+
<p>GitHub. 2008. “GitHub.com.” <a href="https://github.com" class="uri">https://github.com</a>.</p>
|
|
10
|
+
</div>
|
|
11
|
+
<div id="ref-Fidgit">
|
|
12
|
+
<p>Smith, Arfon M. 2013. “Fidgit: An Ungodly Union of GitHub and Figshare.” <a href="https://github.com/arfon/fidgit" class="uri">https://github.com/arfon/fidgit</a>.</p>
|
|
13
|
+
</div>
|
|
14
|
+
</div>
|
|
@@ -0,0 +1,27 @@
|
|
|
1
|
+
---
|
|
2
|
+
title: 'Fidgit: An ungodly union of GitHub and figshare'
|
|
3
|
+
tags:
|
|
4
|
+
- example
|
|
5
|
+
- tags
|
|
6
|
+
- for the paper
|
|
7
|
+
authors:
|
|
8
|
+
- name: Arfon M Smith
|
|
9
|
+
orcid: 0000-0002-3957-2474
|
|
10
|
+
affiliation: "1,2"
|
|
11
|
+
- name: Mickey Mouse
|
|
12
|
+
orcid: 0000-0002-3957-2474
|
|
13
|
+
affiliation: 2
|
|
14
|
+
affiliations:
|
|
15
|
+
- name: GitHub Inc.
|
|
16
|
+
index: 1
|
|
17
|
+
- name: Disney Inc.
|
|
18
|
+
index: 2
|
|
19
|
+
date: 14 February 2016
|
|
20
|
+
bibliography: paper.bib
|
|
21
|
+
---
|
|
22
|
+
|
|
23
|
+
# Summary
|
|
24
|
+
|
|
25
|
+
This is a proof of concept integration between a GitHub [@GitHub] repo and figshare [@figshare] in an effort to get a DOI for a GitHub repository. When a repository is tagged for release on GitHub, Fidgit [@Fidgit] will import the release into figshare thus giving the code bundle a DOI. In a somewhat meta fashion, Fidgit is publishing itself to figshare with DOI 'http://dx.doi.org/10.6084/m9.figshare.828487' [@figshare_archive].
|
|
26
|
+
|
|
27
|
+
# References
|
|
Binary file
|
|
@@ -0,0 +1,28 @@
|
|
|
1
|
+
<?xml version="1.0" encoding="utf-8" ?>
|
|
2
|
+
<article>
|
|
3
|
+
<articleinfo>
|
|
4
|
+
<title>Fidgit: An ungodly union of GitHub and figshare</title>
|
|
5
|
+
<authors>
|
|
6
|
+
<author>
|
|
7
|
+
<name>Arfon M Smith</name>
|
|
8
|
+
<orcid>0000-0002-3957-2474</orcid>
|
|
9
|
+
<affiliation>
|
|
10
|
+
<orgname>
|
|
11
|
+
GitHub Inc.
|
|
12
|
+
</orgname>
|
|
13
|
+
</affiliation>
|
|
14
|
+
</author>
|
|
15
|
+
</authors>
|
|
16
|
+
<tags>
|
|
17
|
+
<tag>example</tag>
|
|
18
|
+
<tag>tags</tag>
|
|
19
|
+
<tag>for the paper</tag>
|
|
20
|
+
</tags>
|
|
21
|
+
<date>14 February 2016</date>
|
|
22
|
+
</articleinfo>
|
|
23
|
+
<body>
|
|
24
|
+
<h1 id="summary">Summary</h1>
|
|
25
|
+
<p>This is a proof of concept integration between a GitHub <span class="citation">[@GitHub]</span> repo and figshare <span class="citation">[@figshare]</span> in an effort to get a DOI for a GitHub repository. When a repository is tagged for release on GitHub, Fidgit <span class="citation">[@Fidgit]</span> will import the release into figshare thus giving the code bundle a DOI. In a somewhat meta fashion, Fidgit is publishing itself to figshare with DOI 'http://dx.doi.org/10.6084/m9.figshare.828487' <span class="citation">[@figshare_archive]</span>.</p>
|
|
26
|
+
<h1 id="references">References</h1>
|
|
27
|
+
</body>
|
|
28
|
+
</article>
|
|
@@ -0,0 +1,26 @@
|
|
|
1
|
+
---
|
|
2
|
+
tags:
|
|
3
|
+
- example
|
|
4
|
+
- tags
|
|
5
|
+
- for the paper
|
|
6
|
+
authors:
|
|
7
|
+
- name: Arfon M Smith
|
|
8
|
+
orcid: 0000-0002-3957-2474
|
|
9
|
+
affiliation: 1
|
|
10
|
+
- name: Mickey Mouse
|
|
11
|
+
orcid: 0000-0000-0000-1234
|
|
12
|
+
affiliation: 2
|
|
13
|
+
affiliations:
|
|
14
|
+
- name: GitHub Inc.
|
|
15
|
+
index: 1
|
|
16
|
+
- name: Disney Inc.
|
|
17
|
+
index: 2
|
|
18
|
+
date: 14 February 2016
|
|
19
|
+
bibliography: paper.bib
|
|
20
|
+
---
|
|
21
|
+
|
|
22
|
+
# Summary
|
|
23
|
+
|
|
24
|
+
This is a proof of concept integration between a GitHub [@GitHub] repo and figshare [@figshare] in an effort to get a DOI for a GitHub repository. When a repository is tagged for release on GitHub, Fidgit [@Fidgit] will import the release into figshare thus giving the code bundle a DOI. In a somewhat meta fashion, Fidgit is publishing itself to figshare with DOI 'http://dx.doi.org/10.6084/m9.figshare.828487' [@figshare_archive].
|
|
25
|
+
|
|
26
|
+
# References
|
|
@@ -0,0 +1,48 @@
|
|
|
1
|
+
**Submitting author:** @zhaozhang (<a href="http://orcid.org/0000-0001-5921-0035">Zhao Zhang</a>)
|
|
2
|
+
**Repository:** <a href="https://github.com/applicationskeleton/Skeleton" target ="_blank">https://github.com/applicationskeleton/Skeleton</a>
|
|
3
|
+
**Version:** v1.2
|
|
4
|
+
**Archive:** <a href="http://dx.doi.org/10.5281/zenodo.13750" target ="_blank">http://dx.doi.org/10.5281/zenodo.13750</a>
|
|
5
|
+
|
|
6
|
+
## Status
|
|
7
|
+
|
|
8
|
+
[](http://joss.theoj.org/papers/6b34fdbf8215c1ecd4941afc8be7a7e6)
|
|
9
|
+
|
|
10
|
+
Status badge code:
|
|
11
|
+
|
|
12
|
+
```
|
|
13
|
+
HTML: <a href="http://joss.theoj.org/papers/6b34fdbf8215c1ecd4941afc8be7a7e6"><img src="http://joss.theoj.org/papers/6b34fdbf8215c1ecd4941afc8be7a7e6/status.svg"></a>
|
|
14
|
+
Markdown: []http://joss.theoj.org/papers/6b34fdbf8215c1ecd4941afc8be7a7e6
|
|
15
|
+
```
|
|
16
|
+
|
|
17
|
+
## Reviewer questions
|
|
18
|
+
|
|
19
|
+
### General checks
|
|
20
|
+
|
|
21
|
+
- [x] **Repository:** Is the source code for this software available at the <a target="_blank" href="https://github.com/applicationskeleton/Skeleton">repository url</a>?
|
|
22
|
+
- [x] **License:** Does the repository contain a plain-text LICENSE file with the contents of an [OSI approved](https://opensource.org/licenses/alphabetical) software license?
|
|
23
|
+
- [x] **Version:** Does the release version given match the GitHub release (v1.2)?
|
|
24
|
+
- [x] **Archive:** Does the <a target="_blank" href="http://dx.doi.org/10.5281/zenodo.13750">software archive</a> resolve?
|
|
25
|
+
|
|
26
|
+
### Functionality
|
|
27
|
+
|
|
28
|
+
- [x] **Installation:** Does installation proceed as outlined in the documentation?
|
|
29
|
+
- [x] **Functionality:** Have the functional claims of the software been confirmed?
|
|
30
|
+
- [x] **Performance:** Have the performance claims of the software been confirmed?
|
|
31
|
+
|
|
32
|
+
### Documentation
|
|
33
|
+
|
|
34
|
+
- [x] **A statement of need:** Do the authors clearly state what problems the software is designed to solve and who the target audience is?
|
|
35
|
+
- [x] **Installation instructions:** Is there a clearly-stated list of dependencies? Ideally these should be handled with an automated package management solution.
|
|
36
|
+
- [x] **Example usage:** Do the authors include examples of how to use the software (ideally to solve real-world analysis problems).
|
|
37
|
+
- [x] **Functionality documentation:** Is the functionality of the software documented to a satisfactory level (e.g. API method documentation)?
|
|
38
|
+
- [x] **Automated tests:** Are there automated tests or manual steps described so that the function of the software can be verified?
|
|
39
|
+
- [x] **Community guidelines:** Are there clear guidelines for third parties wishing to 1) Contribute to the software 2) Report issues or problems with the software 3) Seek support
|
|
40
|
+
|
|
41
|
+
### Software paper
|
|
42
|
+
|
|
43
|
+
Compiled paper PDF: [paper.pdf](https://github.com/openjournals/joss-reviews/files/259667/paper.pdf)
|
|
44
|
+
|
|
45
|
+
|
|
46
|
+
- [x] **Authors:** Does the `paper.md` file include a list of authors with their affiliations?
|
|
47
|
+
- [x] **A statement of need:** Do the authors clearly state what problems the software is designed to solve and who the target audience is?
|
|
48
|
+
- [x] **References:** Do all archival references that should have a DOI list one (e.g. papers, datasets, software)?
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
@@ -0,0 +1,58 @@
|
|
|
1
|
+
---
|
|
2
|
+
http_interactions:
|
|
3
|
+
- request:
|
|
4
|
+
method: get
|
|
5
|
+
uri: http://joss.theoj.org/papers/lookup/17
|
|
6
|
+
body:
|
|
7
|
+
encoding: US-ASCII
|
|
8
|
+
string: ''
|
|
9
|
+
headers:
|
|
10
|
+
Accept:
|
|
11
|
+
- "*/*"
|
|
12
|
+
Accept-Encoding:
|
|
13
|
+
- gzip, deflate
|
|
14
|
+
User-Agent:
|
|
15
|
+
- rest-client/2.0.2 (darwin18.2.0 x86_64) ruby/2.4.1p111
|
|
16
|
+
Host:
|
|
17
|
+
- joss.theoj.org
|
|
18
|
+
response:
|
|
19
|
+
status:
|
|
20
|
+
code: 200
|
|
21
|
+
message: OK
|
|
22
|
+
headers:
|
|
23
|
+
Server:
|
|
24
|
+
- Cowboy
|
|
25
|
+
Connection:
|
|
26
|
+
- close
|
|
27
|
+
Date:
|
|
28
|
+
- Fri, 10 May 2019 19:24:48 GMT
|
|
29
|
+
X-Frame-Options:
|
|
30
|
+
- SAMEORIGIN
|
|
31
|
+
X-Xss-Protection:
|
|
32
|
+
- 1; mode=block
|
|
33
|
+
X-Content-Type-Options:
|
|
34
|
+
- nosniff
|
|
35
|
+
X-Download-Options:
|
|
36
|
+
- noopen
|
|
37
|
+
X-Permitted-Cross-Domain-Policies:
|
|
38
|
+
- none
|
|
39
|
+
Referrer-Policy:
|
|
40
|
+
- strict-origin-when-cross-origin
|
|
41
|
+
Content-Type:
|
|
42
|
+
- application/json; charset=utf-8
|
|
43
|
+
Etag:
|
|
44
|
+
- W/"05d1856d3f337cd56308f89f66165b9e"
|
|
45
|
+
Cache-Control:
|
|
46
|
+
- max-age=0, private, must-revalidate
|
|
47
|
+
X-Request-Id:
|
|
48
|
+
- 1ae0f4bc-d03f-4e02-af78-7cf89d6ab7c8
|
|
49
|
+
X-Runtime:
|
|
50
|
+
- '0.012129'
|
|
51
|
+
Via:
|
|
52
|
+
- 1.1 vegur
|
|
53
|
+
body:
|
|
54
|
+
encoding: UTF-8
|
|
55
|
+
string: '{"submitted":"11 May 2016","accepted":"11 May 2016"}'
|
|
56
|
+
http_version:
|
|
57
|
+
recorded_at: Fri, 10 May 2019 19:24:48 GMT
|
|
58
|
+
recorded_with: VCR 4.0.0
|