ro-crate 0.5.0 → 0.5.1

data/test/reader_test.rb

@@ -279,4 +279,28 @@ class ReaderTest < Test::Unit::TestCase
     assert entity.has_type?('RepositoryCollection')
     assert entity.payload.empty?
   end
+
+  test 'reading RO-Crate with absolute URI files/directories' do
+    crate = ROCrate::Reader.read(fixture_file('uri_heavy_crate').path)
+
+    dir = crate.get('nih:sha-256;f70e-eb2e-89d0-b3dc-5c99-8541-fa4b-6e64-a194-cf9d-ebd8-ca58-24e7-c47a-553f-86fa;c/')
+    assert dir
+    assert dir.is_a?(ROCrate::Directory)
+    assert dir.remote?
+    assert_empty dir.payload
+
+    file = crate.get('nih:sha-256;3a2c-8d14-a40b-3755-4abc-5af8-a56d-ba3a-e159-d688-c9b3-f169-6751-4b88-fbd2-6a9f;7')
+    assert file
+    assert file.is_a?(ROCrate::File)
+    assert file.remote?
+    assert_empty file.payload
+
+    real_file = crate.get('main.nf')
+    assert real_file
+    assert real_file.is_a?(ROCrate::File)
+    refute real_file.remote?
+    assert_not_empty real_file.payload
+    refute real_file.payload.values.first.remote?
+    refute real_file.payload.values.first.directory?
+  end
 end

data/test/writer_test.rb

@@ -227,4 +227,39 @@ class WriterTest < Test::Unit::TestCase
       end
     end
   end
+
+  test 'write crate with remote files and directories' do
+    orig = ROCrate::Reader.read(fixture_file('uri_heavy_crate').path)
+      Tempfile.create do |file|
+        ROCrate::Writer.new(orig).write_zip(file)
+
+        Zip::File.open(file) do |zipfile|
+          refute zipfile.find_entry('nih:sha-256;3a2c-8d14-a40b-3755-4abc-5af8-a56d-ba3a-e159-d688-c9b3-f169-6751-4b88-fbd2-6a9f;7')
+        end
+
+        file.rewind
+
+        crate = ROCrate::Reader.read(file)
+
+        dir = crate.get('nih:sha-256;f70e-eb2e-89d0-b3dc-5c99-8541-fa4b-6e64-a194-cf9d-ebd8-ca58-24e7-c47a-553f-86fa;c/')
+        assert dir
+        assert dir.is_a?(ROCrate::Directory)
+        assert dir.remote?
+        assert_empty dir.payload
+
+        file = crate.get('nih:sha-256;3a2c-8d14-a40b-3755-4abc-5af8-a56d-ba3a-e159-d688-c9b3-f169-6751-4b88-fbd2-6a9f;7')
+        assert file
+        assert file.is_a?(ROCrate::File)
+        assert file.remote?
+        assert_empty file.payload
+
+        real_file = crate.get('main.nf')
+        assert real_file
+        assert real_file.is_a?(ROCrate::File)
+        refute real_file.remote?
+        assert_not_empty real_file.payload
+        refute real_file.payload.values.first.remote?
+        refute real_file.payload.values.first.directory?
+      end
+  end
 end

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: ro-crate
 version: !ruby/object:Gem::Version
-  version: 0.5.0
+  version: 0.5.1
 platform: ruby
 authors:
 - Finn Bacall
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2022-09-06 00:00:00.000000000 Z
+date: 2022-12-12 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: addressable
@@ -217,6 +217,9 @@ files:
 - test/fixtures/unlinked_entity_crate/test/test1/input.bed
 - test/fixtures/unlinked_entity_crate/test/test1/output_exp.bed
 - test/fixtures/unlinked_entity_crate/test/test1/sort-and-change-case-test.yml
+- test/fixtures/uri_heavy_crate/main.nf
+- test/fixtures/uri_heavy_crate/ro-crate-metadata.json
+- test/fixtures/uri_heavy_crate/ro-crate-preview.html
 - test/fixtures/workflow-0.2.0.zip
 - test/fixtures/workflow-0.2.0/Dockerfile
 - test/fixtures/workflow-0.2.0/README.md