ro-crate 0.4.6 → 0.4.11
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/Gemfile.lock +8 -8
- data/README.md +37 -0
- data/lib/ro_crate.rb +1 -0
- data/lib/ro_crate/model/contextual_entity.rb +2 -14
- data/lib/ro_crate/model/crate.rb +14 -0
- data/lib/ro_crate/model/data_entity.rb +3 -3
- data/lib/ro_crate/model/directory.rb +1 -3
- data/lib/ro_crate/model/entity.rb +24 -2
- data/lib/ro_crate/model/file.rb +1 -3
- data/lib/ro_crate/model/metadata.rb +9 -1
- data/lib/ro_crate/model/organization.rb +1 -1
- data/lib/ro_crate/model/preview.rb +3 -15
- data/lib/ro_crate/model/preview_generator.rb +40 -0
- data/lib/ro_crate/reader.rb +122 -26
- data/ro_crate.gemspec +2 -2
- data/test/crate_test.rb +12 -0
- data/test/entity_test.rb +21 -0
- data/test/fixtures/nested_directory.zip +0 -0
- data/test/fixtures/ro-crate-galaxy-sortchangecase/LICENSE +176 -0
- data/test/fixtures/ro-crate-galaxy-sortchangecase/README.md +6 -0
- data/test/fixtures/ro-crate-galaxy-sortchangecase/ro-crate-metadata.json +133 -0
- data/test/fixtures/ro-crate-galaxy-sortchangecase/sort-and-change-case.ga +118 -0
- data/test/fixtures/ro-crate-galaxy-sortchangecase/test/test1/input.bed +3 -0
- data/test/fixtures/ro-crate-galaxy-sortchangecase/test/test1/output_exp.bed +3 -0
- data/test/fixtures/ro-crate-galaxy-sortchangecase/test/test1/sort-and-change-case-test.yml +8 -0
- data/test/fixtures/sparse_directory_crate/ro-crate-preview.html +60 -59
- data/test/reader_test.rb +56 -0
- data/test/writer_test.rb +22 -2
- metadata +13 -4
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}</script>
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<title>New RO-Crate</title>
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<script type="application/ld+json">{
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"@context": "https://w3id.org/ro/crate/1.0/context",
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"@graph": [
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{
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"@id": "ro-crate-metadata.jsonld",
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"@type": "CreativeWork",
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"about": {
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"@id": "./"
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}
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},
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{
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"@id": "ro-crate-preview.html",
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"@type": "CreativeWork",
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"about": {
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"@id": "./"
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}
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},
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{
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"@id": "./",
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"@type": "Dataset",
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"hasPart": [
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{
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"@id": "listed_file.txt"
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}
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]
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},
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{
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"@id": "listed_file.txt",
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"@type": "File"
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}
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]
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}</script>
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<meta name="generator" content="https://github.com/fbacall/ro-crate-ruby">
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<meta name="keywords" content="RO-Crate">
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</dl>
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<h1>New RO-Crate</h1>
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Some stuff has been added here blablabla
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</dl>
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<h2>Contents</h2>
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<ul>
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<li id="__data_entity_listed_file.txt">
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<strong>listed_file.txt</strong>
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</ul>
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</body>
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</html>
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</html>
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data/test/reader_test.rb
CHANGED
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@@ -195,4 +195,60 @@ class ReaderTest < Test::Unit::TestCase
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assert crate.entries['fish/data/binary.jpg']
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assert_equal ['./', 'listed_file.txt', 'ro-crate-metadata.jsonld', 'ro-crate-preview.html'], crate.entities.map(&:id).sort
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end
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test 'reading a zip from various object types' do
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string_io = StringIO.new
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string_io.write(::File.read(fixture_file('sparse_directory_crate.zip').path))
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string_io.rewind
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assert string_io.is_a?(StringIO)
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assert_equal 11, ROCrate::Reader.read_zip(string_io).entries.count
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path = Pathname.new(fixture_file('sparse_directory_crate.zip').path)
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assert path.is_a?(Pathname)
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assert_equal 11, ROCrate::Reader.read_zip(path).entries.count
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file = ::File.open(fixture_file('sparse_directory_crate.zip').path)
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assert file.is_a?(::File)
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assert_equal 11, ROCrate::Reader.read_zip(file).entries.count
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string = fixture_file('sparse_directory_crate.zip').path
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assert string.is_a?(String)
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assert_equal 11, ROCrate::Reader.read_zip(string).entries.count
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end
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test 'reading from zip where the crate root is nested somewhere within' do
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crate = ROCrate::Reader.read_zip(fixture_file('nested_directory.zip'))
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assert crate.entries['fish/info.txt']
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assert_equal '1234', crate.entries['fish/info.txt'].source.read.chomp
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assert crate.entries['fish/root.txt']
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assert crate.entries['fish/data/info.txt']
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assert crate.entries['fish/data/nested.txt']
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assert crate.entries['fish/data/binary.jpg']
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assert_equal ['./', 'fish/', 'ro-crate-metadata.json', 'ro-crate-preview.html'], crate.entities.map(&:id).sort
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end
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test 'reading preserves any additions to @context' do
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crate = ROCrate::Reader.read_directory(fixture_file('ro-crate-galaxy-sortchangecase').path)
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context = crate.metadata.context
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assert_equal [
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'https://w3id.org/ro/crate/1.1/context',
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{
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'TestSuite' => 'https://w3id.org/ro/terms/test#TestSuite',
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'TestInstance' => 'https://w3id.org/ro/terms/test#TestInstance',
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'TestService' => 'https://w3id.org/ro/terms/test#TestService',
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'TestDefinition' => 'https://w3id.org/ro/terms/test#TestDefinition',
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'PlanemoEngine' => 'https://w3id.org/ro/terms/test#PlanemoEngine',
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'JenkinsService' => 'https://w3id.org/ro/terms/test#JenkinsService',
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'TravisService' => 'https://w3id.org/ro/terms/test#TravisService',
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'GithubService' => 'https://w3id.org/ro/terms/test#GithubService',
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'instance' => 'https://w3id.org/ro/terms/test#instance',
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'runsOn' => 'https://w3id.org/ro/terms/test#runsOn',
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'resource' => 'https://w3id.org/ro/terms/test#resource',
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'definition' => 'https://w3id.org/ro/terms/test#definition',
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'engineVersion' => 'https://w3id.org/ro/terms/test#engineVersion'
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}
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], context
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end
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end
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data/test/writer_test.rb
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actual_files = Dir.chdir(dir) { Dir.glob('**/*') }
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assert_equal expected_files, actual_files
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expected_files.each do |file|
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next if file == 'ro-crate-metadata.jsonld' # Expected context gets updated.
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next if file == 'ro-crate-preview.html' # RO-Crate preview format changed
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abs_file_path = ::File.join(fixture, file)
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next if ::File.directory?(abs_file_path)
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assert_equal ::File.read(abs_file_path), ::File.read(::File.join(dir, file)), "#{file} didn't match"
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end
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end
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end
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test 'reading/writing multiple times does not change the crate' do
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input_dir = fixture_file('sparse_directory_crate').path
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Dir.mktmpdir do |dir|
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3.times do |i|
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output_dir = ::File.join(dir, "new_directory_#{i}")
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crate = ROCrate::Reader.read(input_dir)
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ROCrate::Writer.new(crate).write(output_dir)
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expected_files = Dir.chdir(input_dir) { Dir.glob('**/*') }
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actual_files = Dir.chdir(output_dir) { Dir.glob('**/*') }
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assert_equal expected_files, actual_files
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expected_files.each do |file|
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abs_file_path = ::File.join(input_dir, file)
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next if ::File.directory?(abs_file_path)
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assert_equal ::File.read(abs_file_path), ::File.read(::File.join(output_dir, file)), "#{file} didn't match"
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end
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input_dir = output_dir
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end
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end
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end
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end
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metadata
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--- !ruby/object:Gem::Specification
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name: ro-crate
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version: !ruby/object:Gem::Version
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version: 0.4.
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version: 0.4.11
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platform: ruby
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authors:
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- Finn Bacall
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autorequire:
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bindir: bin
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cert_chain: []
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date: 2021-
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date: 2021-04-30 00:00:00.000000000 Z
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dependencies:
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name: addressable
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requirements:
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- - "~>"
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version: 0.
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version: 0.21.2
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type: :development
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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requirements:
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version: 0.
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version: 0.21.2
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name: yard
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requirement: !ruby/object:Gem::Requirement
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- lib/ro_crate/model/organization.rb
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- lib/ro_crate/model/person.rb
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- lib/ro_crate/model/preview.rb
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- lib/ro_crate/model/preview_generator.rb
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- lib/ro_crate/model/remote_entry.rb
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- lib/ro_crate/reader.rb
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- lib/ro_crate/ro-crate-preview.html.erb
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- test/fixtures/directory_crate/ro-crate-preview.html
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- test/fixtures/file with spaces.txt
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- test/fixtures/info.txt
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- test/fixtures/nested_directory.zip
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- test/fixtures/ro-crate-galaxy-sortchangecase/LICENSE
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- test/fixtures/ro-crate-galaxy-sortchangecase/README.md
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- test/fixtures/ro-crate-galaxy-sortchangecase/ro-crate-metadata.json
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- test/fixtures/ro-crate-galaxy-sortchangecase/sort-and-change-case.ga
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- test/fixtures/ro-crate-galaxy-sortchangecase/test/test1/input.bed
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- test/fixtures/ro-crate-galaxy-sortchangecase/test/test1/output_exp.bed
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- test/fixtures/ro-crate-galaxy-sortchangecase/test/test1/sort-and-change-case-test.yml
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- test/fixtures/spaces/file with spaces.txt
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- test/fixtures/spaces/ro-crate-metadata.jsonld
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- test/fixtures/sparse_directory_crate.zip
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