rnewick 0.1.0 → 0.1.1

data/VERSION

@@ -1 +1 @@
-0.1.0
+0.1.1

data/lib/rnewick.rb

@@ -1,4 +1,12 @@
 #!/usr/bin/env ruby
+def binary_available(name)
+  available = false
+  ENV['PATH'].split(':').each do |folder|
+    available = true if File.exists?(File.join folder, name)
+  end
+  available
+end
+
 class NewickString
   attr_reader :str
   def initialize(str)
@@ -63,14 +71,15 @@ class NewickFile
     end
   end
   def remove_taxa(taxa, pruned_tree, verbose = false)
-    nw_pruner = File.join ConfigData.bin_dir, "nw_prune"
-    nw_unrooter = File.join ConfigData.bin_dir, "nw_reroot"
+    # assume nw_prune and nw_reroot are in the PATH
+    nw_pruner = "nw_prune"
+    nw_unrooter = "nw_reroot"
     [nw_pruner, nw_unrooter].each do |nw_util|
-      raise "#{nw_util} from newick utilities not available" unless File.exist?(nw_util)
+      raise "#{nw_util} from newick utilities not available" unless binary_available(nw_util)
     end
-    # prune a list of taxa and unroot resulting tree with these nice and fast newick utilities
+    # prune a list of taxa and unroot resulting tree(s) with these nice and fast newick utilities
     system "#{nw_pruner} #{@filename} #{taxa.join ' '} | #{nw_unrooter} -d - > #{pruned_tree}"
-    puts "removed #{taxa.join ','} and saved in #{pruned_tree}, use #{nw_pruner}" if verbose
+    puts "removed #{taxa.join ','} and saved in #{pruned_tree}" if verbose
   end
 end
 

data/rnewick.gemspec

@@ -0,0 +1,66 @@
+# Generated by jeweler
+# DO NOT EDIT THIS FILE DIRECTLY
+# Instead, edit Jeweler::Tasks in Rakefile, and run 'rake gemspec'
+# -*- encoding: utf-8 -*-
+
+Gem::Specification.new do |s|
+  s.name = %q{rnewick}
+  s.version = "0.1.1"
+
+  s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
+  s.authors = [%q{Fernando Izquierdo-Carrasco}]
+  s.date = %q{2012-04-11}
+  s.description = %q{newick utilities}
+  s.email = %q{fer.izquierdo@gmail.com}
+  s.extra_rdoc_files = [
+    "LICENSE.txt",
+    "README.rdoc"
+  ]
+  s.files = [
+    ".document",
+    "Gemfile",
+    "Gemfile.lock",
+    "LICENSE.txt",
+    "README.rdoc",
+    "Rakefile",
+    "VERSION",
+    "lib/rnewick.rb",
+    "rnewick.gemspec",
+    "test/helper.rb",
+    "test/test_rnewick.rb",
+    "test/testdata/20",
+    "test/testdata/20start.nw",
+    "test/testdata/20start.nw.pruned_to.9",
+    "test/testdata/9"
+  ]
+  s.homepage = %q{http://github.com/fizquierdo/rnewick}
+  s.licenses = [%q{MIT}]
+  s.require_paths = [%q{lib}]
+  s.rubygems_version = %q{1.8.6}
+  s.summary = %q{newick utilities}
+
+  if s.respond_to? :specification_version then
+    s.specification_version = 3
+
+    if Gem::Version.new(Gem::VERSION) >= Gem::Version.new('1.2.0') then
+      s.add_development_dependency(%q<shoulda>, [">= 0"])
+      s.add_development_dependency(%q<rdoc>, ["~> 3.12"])
+      s.add_development_dependency(%q<bundler>, ["~> 1.0.0"])
+      s.add_development_dependency(%q<jeweler>, ["~> 1.8.3"])
+      s.add_development_dependency(%q<rcov>, [">= 0"])
+    else
+      s.add_dependency(%q<shoulda>, [">= 0"])
+      s.add_dependency(%q<rdoc>, ["~> 3.12"])
+      s.add_dependency(%q<bundler>, ["~> 1.0.0"])
+      s.add_dependency(%q<jeweler>, ["~> 1.8.3"])
+      s.add_dependency(%q<rcov>, [">= 0"])
+    end
+  else
+    s.add_dependency(%q<shoulda>, [">= 0"])
+    s.add_dependency(%q<rdoc>, ["~> 3.12"])
+    s.add_dependency(%q<bundler>, ["~> 1.0.0"])
+    s.add_dependency(%q<jeweler>, ["~> 1.8.3"])
+    s.add_dependency(%q<rcov>, [">= 0"])
+  end
+end
+

data/test/test_rnewick.rb

@@ -1,7 +1,22 @@
 require 'helper'
 
 class TestRnewick < Test::Unit::TestCase
-  should "probably rename this file and start testing for real" do
-    flunk "hey buddy, you should probably rename this file and start testing for real"
+  should "find binary files for pruning" do
+    assert binary_available("nw_prune")
+    assert binary_available("nw_reroot")
+  end
+  should "be able to prune a newick string corretly" do
+    # prepare data
+    newick_file = NewickFile.new("test/testdata/20start.nw")
+    outliers = ["Seq10", "Seq11", "Seq12", "Seq13", "Seq14", "Seq15", "Seq16", "Seq17", "Seq18", "Seq19", "Seq20"]
+    expected_pruned_newick_file = NewickFile.new("test/testdata/20start.nw.pruned_to.9")
+    # prune
+    pruned = "test/testdata/tmp_pruned.nw"
+    newick_file.remove_taxa(outliers, pruned)
+    # check
+    pruned_file = NewickFile.new(pruned)
+    assert_equal pruned_file.newickStrings.first.str, expected_pruned_newick_file.newickStrings.first.str
+    # clean
+    File.delete(pruned)
   end
 end

data/test/testdata/20

@@ -0,0 +1,21 @@
+20 1200
+Seq1 ATGACCAACATTCGAAAATCACACCCCCTTATCAAAATCGTTAATCACTCATTCATCGATTTACCCACCCCACCTAACATTTCAGCATGATGAAACTTCGGCTCCCTACTAGGAGTCTGCCTAGTCCTACAGATCCTAACCGGCCTTTTCCTAGCCATACACTACACATCAGACACAATAACCGCCTTTTCATCAGTTACTCACATCTGCCGCGACGTCAACTACGGCTGAATTATTCGATACATGCACGCCAACGGAGCCTCTATATTCTTTATCTGCCTATACATGCATGTAGGACGAGGAATATACTACGGCTCCTACACCTTCTCAGAAACATGAAATATTGGAATCATACTACTACTCACAGTCATAGCCACAGCCTTCATAGGATATGTCTTACCATGAGGTCAAATATCTTTCTGAGGAGCAACTGTAATTACCAACCTCCTATCAGCAATTCCTTACATCGGCACTAATCTAGTAGAGTGAATTTGAGGAGGTTTCTCGGTAGACAAAGCTACCCTGACACGATTCTTTGCCTTCCACTTTATCCTTCCATTCATCATCTCAGCCCTAGCAGCAGTACACCTCTTATTTCTCCACGAGACAGGATCCAATAACCCCTCAGGAATCACATCCGACTCAGACAAAATTCCATTCCACCCATACTACATAATCAAGGACATTCTAGGTCTCCTAATACTAATTTTAATACTCACACTACTCGTCCTCTTCTCACCAGACCTGTTAGGAGATCCAGACAACTACATCCCCGCCAACCCCCTAAACACTCCTCCCCATATTAAACCCGAATGATATTTTTTATTCGCATACGCAATCCTCCGATCCATCCCTAACAAATTAGGAGGAGTCCTAGCCCTAATATTCTCCATCCTAATCCTAGCAATCATTCCAATTTTCCACACCTCCAAACAACGAGGAATAATATTTCGACCACTAAGCCAATGCTTATTCTGACTCCTAGTAGCAGACCTCCTCACCCTAACATGAATTGGCGGCCAACCTGTAGAACACCCCTTTATTACCATCGGCCAACTAGCCTCCATTCTATACTTCTCAACCCTCCTAGTTCTAATACCTATTTCAGGCATCATCGAAAACCGCCTCCTA------AAATGA------------------------------------------------------AGA
+Seq2 ATGAAAATTATACGAAAAACACACCCACTCCTAAAAATCATTAACCATGCATTCGTCGACCTCCCTGCACCCTCCAACATCTCATCATGATGAAACTTCGGCTCTCTATTAGGAGTATGCCTAATAATCCAAATCCTCACAGGACTGTTTCTAGCAATACACTACACCTCAGACACTATAACAGCATTCTCATCCGTAACCCACATCTGCCGAGACGTAAATTACGGTTGACTGATTCGATACCTCCATGCAAACGGAGCCTCCATGTTCTTCATGTGCTTATTCATACACGTAGGACGAGGCATCTACTATGGGTCCTACACCTTTATAGAGACATGAAACCTTGGTATTATTCTACTGTTTGCCGTAATAGCAACTGCATTTATAGGATATGTCCTCCCATGGGGGCAAATATCCTTCTGAGGGGCCACAGTCATCACAAACCTACTTTCAGCCATCCCCTACATCGGTACTAACCTAGTAGAATGAATCTGAGGCGGATTTTCAGTAGACAAAGCCACCCTTACACGCTTCTTCGCATTCCACTTTATCCTCCCCTTTATTATTGCAGCTCTGGCCATGGTACACCTACTTTTTCTCCACGAAACAGGCTCTAATAACCCCACAGGAATGAACTCCGATGCAGACAAAATCCCCTTCCACCCCTACTACACAATCAAAGACCTCTTAGGTGTATTCCTCATACTGTCAGTCCTCCTCCTATTAGTACTTTTCTCCCCAGACCTATTAGGAGACCCCGACAACTATACACCAGCTAACCCCCTAAACACCCCTCCTCACATTAAGCCAGAATGATACTTTCTATTTGCATATGCTATCCTACGCTCTATCCCCAACAAACTAGGAGGCGTATTAGCCCTAGTACTATCCATCCTAATCCTAGCTTTTATACCTCTCACCTACACCTTAAAACAACGAATCTTAATATTCCGCCCAATCAGCCAGACCATATTCTGAATCCTAGCAGCCAACCTACTTATCCTAACCTGAATCGGAGGACAACCCGTAGAACACCCCTTCATCATTATTGGCCAACTAGCTTCAATCAGCTACTTCTCCATCATTTTAATTCTAATACCAATCTCAGGACTAATCGAAAACAAAATACTAAAACTA------AAC---------------------------------------------------T--
+Seq3 ATGAAAATTATACGAAAAACACACCCACTCCTAAAAATCATTAATCACGCATTCGTCGACCTCCCTGCACCCTCTAACATCTCATCATGATGAAACTTCGGCTCCCTATTAGGAGTATGCCTAATAATCCAAATCCTCACAGGACTATTTCTAGCAATACACTACACCTCCGACACTACAACAGCATTCTCATCCGTAACCCACATCTGCCGAGACGTAAACTACGGCTGATTAATTCGATACCTCCATGCAAATGGGGCTTCCATATTCTTCATGTGCTTATTCATACACGTAGGACGAGGCATTTATTATGGGTCTTACACCTTCACAGAGACATGAAACCTTGGTATCATTCTACTGTTTGCCGTAATAGCAACTGCATTTATAGGATATGTCCTTCCATGGGGACAAATATCCTTCTGAGGGGCCACAGTCATTACAAACCTACTCTCAGCCATCCCCTACATCGGCACTGACCTGGTAGAGTGAATCTGAGGCGGGTTTTCAGTAGACAAAGCCACCCTTACACGCTTCTTCGCATTCCACTTTATTCTCCCCTTTATCATTGCAGCCCTAGCCATAGTACACCTACTCTTTCTACACGAAACAGGCTCTAATAACCCCACAGGAGTGAACTCCGATGCAGACAAAATCCCCTTCCACCCCTACTACACAATCAAAGACCTTTTAGGTGTATTCCTCATACTATTAGTCCTCCTCCTATTAGTACTATTCTCCCCAGACCTACTAGGAGACCCCGACAACTACACACCAGCTAACCCCCTGAACACCCCTCCTCACATTAAACCAGAATGATATTTCCTATTCGCATATGCTATTCTACGCTCCATCCCCAACAAACTCGGAGGCGTACTAGCTCTAGTAATATCTATCCTAATCCTAATTTTCATACCCCTCACCCACACCTCAAAACAACGAAGCTTAATATTCCGCCCAATCAGTCAGGCTATATTCTGAATCCTAACAGCTAACCTACTTATCCTAACCTGAATCGGAGGACAACCCGTAGAACACCCCTTTATCATTATCGGCCAACTAGCTTCAATCAGCTATTTCTCCATCATTTTAATCCTAATACCAATCTCAGGACTAATTGAAAACAAAATACTAAAATTA------AAC---------------------------------------------------T--
+Seq4 ATGAAAATTATACGAAAAACACACCCACTCATAAAAATTATCAACCACGCATTCATCGATCTCCCTGCACCCTCCAACATCTCATCATGATGAAACTTTGGTTCTCTATTAGGAGTATGCCTAATAGTCCAAATCCTCACAGGCCTATTCTTAGCAATACACTACACCTCCGACACTATAACAGCATTCACATCCGTAACCCACATCTGCCGAGACGTAAACTACGGCTGATTAATTCGATATCTCCATGCAAACGGAGCCTCCATATTCTTCGTATGCTTGTTTATACACGTAGGACGAGGAATCTACTATGGATCTTACACCTTTACAGAAACATGAAATCTTGGTGTTATTCTACTATTTGCCGTAATAGCAACTGCATTTATAGGATATGTACTTCCATGAGGACAAATATCCTTCTGAGGAGCCACAGTCATTACAAACCTTCTCTCAGCTATTCCCTACATCGGTACTAACCTAGTAGAATGAATTTGAGGGGGGTTCTCAGTAGACAAAGCCACCCTCACACGCTTCTTCGCATTCCACTTTATCCTTCCATTTATCATTGCAGCCCTAGCCATAGTACACCTACTATTCCTCCACGAAACAGGCTCTAATAACCCCACAGGAATGAACTCTGACGCAGATAAAATTCCCTTTCACCCCTACTATACAATCAAAGACCTCTTAGGCGTATTTCTCATACTACTAGTTCTCCTACTATTAGTACTATTTTCCCCAGACTTATTAGGAGACCCCGACAACTACACACCAGCCAACCCCCTAAATACCCCTCCCCACATTAAACCAGAGTGATATTTTCTATT-GCATACGCTATCCTACGCTCTATCCCCAATAAACTTGGAGGCGTACTAGCCCTAGTACTATCTATCCTAATCCTAATTCTCATACCCTTAATCCATACCTCAAAACAACGAAGCTTAATATTCCGTCCAATTAGCCAAATCATATTCTGAATCCTAACAGCTAACCTACTCATCCTGACCTGAATCGGAGGACAACCCGTAGAACATCCCTTTATCATTATCGGCCAACTAGCTTCAATCAGCTATTTCTCCATTATTCTAATCCTAATACCGATCTCAGGACTAATTGAAAATAAAATACTAAAATTA------AAC---------------------------------------------------T--
+Seq5 ATGAAAAACATACGAAAAACGCAACCACTCCTAAAAATTATTAACCACGAATTCATTGA-TTTCCTGAAACATCCAA-ATCTCATCATGATGAAACTTTGGCTCTCTACTAGGCATCTGCCTAGTAATCCAGATCCTAACAGGCTTATTCCTAGCAATACACTATACCTCCGACACCACCACAGCATTTTCATCTGTAACCCACATTTGCCGAGACGTAAACTACGGCTGACTGATTCGTTACCTCCATGCAAATGGAGCCTCCATATTCTTCATGTGCCTGTTCATACATGTAGGACGGGGAATCTACTACGGATCTTATACCTTCATAGAAACCTGAAATCTCGGCATTATTCTACTGTTCGCCGTAATAGCAACTGCATTTATAGGATATGTACTCCCATGAGGACAGATATCCTTCTGAGGGGCCACAGTCATTACAAATCTACTCTCAGCTATCCCCTACATCGGAACTAATCTAGTAGAGTGAATTTGAGGAGGCTTCTCAGTAGACAAAGCCACTCTAACACGCTTTTTCGCATTCCACTTTATCCTACCCTTTATCATTGCAGCCCTAGCTATAGTCCACCTACTATTCCTCCACGAAACAGGATCTAACAA-CCCACCGGGATAAACTCTGACGCAGATAAAATCCCCTTTCATCCCTACTACACAATTAAAGATCTCCTAGGAGTATTCCTAATATTAACAGCCCTACTCTTATTAGTCCTCTTCTCCCCAGACTTATTAGGAGACCCCGACAACTACACACCAGCCAACCCCCTAAACACCCCTCCCCACATCAAACCAGAATGATATTTCCTATTTGCATACGCCATCCTACGCTCTATTCCTAACAAACTCGGAGGAGTACTAGCCCTAGTGCTATCAATCCTAATCCTAATTTTTTTACCCTTCATCCACACTTCCAAACAACGAAGCCTAATATTCCGCCCAATCAGCCAAACCATATTTTGAATCCTAGCAGCAAATCTTCTTGTCCTAACCTGAATCGGAGGACAACCTGTAGAATACCCCTTCACCATTATTGGCCAACTAGCCTCAATCAGTTATTTCTCTATTATCCTAATCCTACTACCAATCTCAGGTCTAATC-AAAATAAAATAATAAAAATA------AAC---------------------------------------------------T--
+Seq6 ATGAAAATTATACGAAAAACACACCCACTCCTAAAAATCATTAATCACGCATTCGTCGACCTCCCTGCACCCTCTAACATCTCATCATGATGAAACTTCGGCTCCCTATTAGGAGTATGCCTAATAATCCAAATCCTCACAGGACTATTTCTAGCAATACACTACACCTCCGACACTACAACAGCATTCTCATCCGTAACCCACATCTGCCGAGACGTAAACTACGGCTGATTAATTCGATACCTCCATGCAAATGGGGCTTCCATATTCTTCATGTGCTTATTCATACACGTAGGACGAGGCATTTATTATGGGTCTTACACCTTCACAGAGACATGAAACCTTGGTATCATTCTACTGTTTGCCGTAATAGCAACTGCATTTATAGGATATGTCCTTCCATGGGGACAAATATCCTTCTGAGGGGCCACAGTCATTACAAACCTACTCTCAGCCATCCCCTACATCGGCACTGACCTGGTAGAGTGAATCTGAGGCGGGTTTTCAGTAGACAAAGCCACCCTTACACGCTTCTTCGCATTCCACTTTATTCTCCCCTTTATCATTGCAGCCCTAGCCATAGTACACCTACTCTTTCTACACGAAACAGGCTCTAATAACCCCACAGGAGTGAACTCCGATGCAGACAAAATCCCCTTCCACCCCTACTACACAATCAAAGACCTTTTAGGTGTATTCCTCATACTATTAGCCCTCCTCCTATTAGTACTATTCTCCCCAGACCTACTAGGAGACCCCGACAACTACACACCAGCTAACCCCCTGAACACCCCTCCTCACATTAAACCAGAATGATATTTCCTATTCGCATATGCTATTCTACGCTCCATCCCCAACAAACTCGGAGGCGTACTAGCTCTAGTAATATCTATCCTAATCCTAATTTTCATACCCCTCACCCACACCTCAAAACAACGAAGCTTAATATTCCGCCCAATCAGTCAGGCTATATTCTGAATCCTAACAGCTAACCTACTTATCCTAACCTGAATCGGAGGACAACCCGTAGAACACCCCTTTATCATTATCGGCCAACTAGCTTCAATCAGCTATTTCTCCATCATTTTAATCCTAATACCAATCTCAGGACTAATTGAAAACAAAATACTAAAATTA------AAC---------------------------------------------------T--
+Seq7 ATGAAAATTATACGAAAAACACACCCACTCCTAAAAATCATTAATCACGCATTCGTCGACCTCCCTGCACCCTCTAATATCTCATCATGATGAAACTTCGGCTCCCTATTAGGAGTATGCCTAGTAATCCAAATCCTCACAGGATTATTTCTAGCAATACACTACACCTCCGACACTATAACAGCATTCTCATCCGTAACCCACATCTGCCGAGACGTAAACTACGGCTGATTAATTCGATACCTCCATGCAAATGGGGCTTCCATATTCTTCGTGTGCTTATTCATACACGTAGGACGAGGCATTTATTATGGATCTTACACCTTCACAGAGACATGAAACCTTGGTATCATTCTACTGTTTGCCGTAATAGCAACTGCATTTATAGGGTATGTCCTTCCATGGGGACAAATATCCTTCTGAGGGGCCACAGTCATTACAAACCTACTCTCAGCCATCCCCTACATCGGCACTGACCTGGTAGAGTGAATCTGAGGCGGGTTTTCAGTAGACAAAGCCACCCTTACACGCTTCTTCGCATTCCACTTTATTCTCCCCTTTATCATTGCAGCCCTAGCCATAGTACACCTACTCTTTCTACACGAAACAGGCTCTAATAACCCCACAGGAGTAAACTCCGATGCAGACAAAATCCCCTTCCACCCCTACTACACAATCAAAGACCTTTTAGGTGTTTTCCTCATACTATTAGTCCTCCTCCTACTAGTACTATTCTCCCCAGATCTACTAGGAGACCCCGACAACTACACACCAGCTAACCCCCTGAACACCCCTCCTCACATTAAACCAGAATGGTATTTCCTATTCGCATATGCTATTCTACGCTCCATCCCCAACAAACTCGGAGGTGTACTAGCTCTAGTAATATCTATCCTAATCCTAATTTTCATACCCCTCACCCACACCTCAAAACAACGAAGCTTAATATTCCGCCCAATCAGTCAGGCTATATTCTGAATCCTAACAGCTAACCTACTTATCCTAACCTGAATCGGAGGACAACCCGTAGAACACCCCTTTATCATTATCGGCCAACTAGCTTCAATCAGCTACTTCTCCATTATTTTAATCCTAATACCAATCTCAGGACTAATTGAAAACAAAATACTAAAATTA------AAC---------------------------------------------------T--
+Seq8 ATGAAAAACATACGAAAATCACACCCACTACTAAAAATCATTAATCTCGCATTTATTGACCTACCCGCACCATCCAATATCTCATCATGATGAAACTTTGGGTCCCTTCTAGGAGTCTGTCTAGTAGTACAAATTATCACAGGACTATTTCTAGCAATACACTACACCTCTGATACCACAACAGCATTTTCATCTGTAACTCATATCTGCCGAGATGTAAACTACGGTTGATTGATTCGATATCTTCATGCAAACGGAGCCTCAATATTCTTCATGTGCCTATTTATACACGTAGGACGAGGAATCTACTACGGATCCTACACCTTTACAGAAACCTGAAATATTGGCATTATTCTACTGTTCGCCGTAATAGCAACTGCATTTATAGGATATGTGCTTCCCTGAGGACAAATATCCTTCTGAGGAGCCACAGTTATTACTAACCTTCTCTCAGCAGTTCCCTACATCGGTACTAATTTAGTAGAATGAATCTGAGGGGGGTTCTCAGTAGACAAAGCCACTCTTACACGCTTCTTCGCATTCCATTTTATCCTCCCATTCATCATTGCAGCCCTAGCTATAGTCCACCTACTTTTTCTCCACGAAACTGGATCCAATAACCCCACCGGAATCAACTCTGATGCAGACAAAATTCCATTCCATCCGTACTACACTATAAAAGACTTCCTAGGGGCCCTACTCATGTTAGTAGTTCTACTCCTACTTGTTTTATTTTCCCCAGATATTTTAGGCGACCCAGATAATTATACACCAGCTAACCCCCTAAACACACCTCCTCACATCAAACCAGAGTGATATTTCCTATTCGCCTACGCTATCCTACGTTCTATCCCCAATAAACTAGGAGGAGTGTTAGCTTTAGTACTATCCATCCTTGTCCTAGCCTTGCTACCTCTCATGCACACCTCAAAACAACGAAGCCTTATGTTCCGCCCAATTAGCCAAATCCTATTTTGAATACTAACAGCTAATCTTCTAATTCTAACCTGAATTGGGGGACAACCAGTAGAACACCCCTTCATTATCATTGGACAAGTAGCTTCAATCAGCTACTTCTCTATTATTTTAATCCTAATACCAATCTCAGGACTAATCGAAAACAAAATACTAAAACTT------------------------------------------------------------T--
+Seq9 ATGACAAACATCCGAAAAACACACCCCCTACTTAAAATTATTAATAACGCATTCATTGACCTACCAGCCCCATCCAACATTTCATCATGATGAAACTTCGGGTCTTTACTAGGAATCTGCTTAATCATCCAAATCATCACAGGACTTTTCCTAGCCATACATTACACCTCAGACACCTCAACAGCATTCTCATCTGTTACCCATATTTGCCGAGATGTAAACTACGGTTGACTTATTCGCTATCTTCATGCAAACGGAGCCTCCATATTCTTTGTCTGCTTATTTATACATGTTGGACGAGGAATCTATTACGGATCTTATACCTACATAGAAACATGAAATATCGGCATCATTCTACTGTTCGCCGTAATAGCAACTGCATTTATAGGATATGTACTTCCATGAGGACAAATATCTTTTTGAGGGGCCACAGTCATTACCAACCTACTATCAGCTATCCCTTACATTGGCACTAACTTAGTAGAATGAATTTGAGGTGGATTTTCCGTAGATAAAGCCACCCTAACACGATTCTTCGCCTTCCACTTTATTCTCCCATTTATCATCGCTGCCCTAGCCATAGTTCATCTTCTTTTCCTTCACGAAACAGGATCTAATAATCCTACCGGAATTAACTCCGACACTGACAAAATTCCCTTTCATCCTTACTACACAACAAAAGACCTATTAGGAGCTCTAATACTCATTATAGTCCTACTAGCACTAGTATTATTTTCACCTGACCTCCTAGGAGACCCAGATAACTACACACCAGCTAACCCATTAAATACACCTCCCCATATCAAACCAGAATGATATTTCTTATTCGCCTACGCAATCCTCCGATCCATCCCTAACAAACTAGGAGGAGTCTTAGCCCTGGTCTTATCAATCCTAGTCCTAGCAATCCTCCCACTAATCCACACCTCAAAACAACGAAGCCTCATATTCCGCCCAATTAGCCAAACCCTATTCTGAATCCTAGTGGCCAACCTATTAATCCTTACCTGAATCGGAGGACAACCCGTAGAACACCCCTTCATCATCATCGGCCAACTAGCTTCCATCAGCTACTTCACAATCATCCTAACTCTCATTCCTATCTCAGGCCTAATCGAAAATAAAATAATG------AAATGAAAC---------------------------------------------------T--
+Seq10 ATGACTAACATTCGAAAAACTCACCCACTGATAAAAATTGTAAACAACGCATTTATCGACCTCCCAGCCCCATCAAACATTTCATCATGATGAAACTTTGGCTCCCTACTAGGCATCTGCCTAATCCTGCAAATCTTAACAGGCCTATTCCTAGCGATACACTACACATCCGACACAACAACAGCATTCTCCTCTGTCGCCCACATTTGCCGAGACGTCAATTATGGCTGAATCATCCGATACATACACGCAAACGGAGCATCAATATTTTTTATCTGCCTATTCATACACGTAGGACGAGGCCTCTACTATGGGTCATATACCTTCCTAGAAACATGAAACGTCGGAGTAATCCTCCTATTTACAACAATAGCCACAGCATTTATAGGCTATGTCCTGCCATGAGGACAAATATCATTCTGAGGAGCAACAGTCATCACCAACCTTCTCTCAGCAATCCCATATATCGGCACAGACCTGGTCGAATGAATCTGAGGAGGATTCTCCGTAGACAAAGCAACCCTTACCCGATTTTTCGCCTTCCACTTTATTCTCCCCTTTATTATCGCTGCCCTTGCCATAGTCCATCTACTCTTTCTCCACGAAACAGGCTCCAACAACCCTACAGGAATCTCCTCAGACACAGACAAAATCCCATTCCACCCTTACTATACCATTAAAGACATCTTAGGCGCCCTACTACTAATTCTAGTCCTCATACTACTAGTATTATTCACACCCGACCTACTTGGAGACCCAGACAATTATACCCCAGCAAATCCACTTAGCACGCCCCCTCACATCAAACCTGAATGATATTTCCTATTTGCATACGCAATTCTACGATCAATCCCCAACAAACTAGGAGGAGTTCTAGCCTTAGTCCTCTCAATCCTAATCCTGGTACTCGTACCCGCACTCCACACATCCAAGCAACGAAGCATAATATTTCGACCAATCAGCCAATGCATTTTCTGAATCTTAGTAGCAGACCTATTAACACTCACATGAATCGGAGGACAACCAGTTGAACACCCATACATTATTATTGGACAATTAGCATCTATCACATACTTCCTACTTATCCTAGTACTTATACCAGTAGCCAGTACTATTGAAAATAACCTTCTA------AAATGA------------------------------------------------------AGA
+Seq11 ATGACAAACATCCGAAAAATTCATCCCCTAATAAAAACCATTAACCACTCCTTCATTGATCTCCCCGCACCATCCAACATCTCATCATGATGAAACTTCGGCTCTCTACTAGGAATTTGCTTAATAGTACAAATCATCACAGGTCTATTCTTAGCCATACATTATACATCAGACACAACAACAGCATTTTCATCAGTAACCCATATCTGCCGAGACGTAAATTATGGATGACTAATCCGATATATACATGCAAACGGAGCCTCAATGTTCTTCATCTGCTTATTCCTTCATGTAGGACGAGGAATATACTATGGATCTTATACATTCCTAGAAACATGAAACATCGGAGTGATTTTATTATTTACAGTCATAGCCACTGCATTCATAGGATATGTCCTTCCATGAGGACAAATATCATTCTGAGGGGCCACAGTAATTACAAACTTACTTTCAGCCATCCCATATATTGGCACAATCCTAGTAGAATGAATCTGAGGCGGATTCTCAGTAGACAAGGCTACTTTAACACGCTTTTTCGCATTTCACTTCATCTTACCATTCATTATTGCCGCCTTAGCAATCGTTCACCTACTATTTCTACATGAAACAGGCTCAAATAATCCAACAGGACTTAACTCAGATGCAGACAAAATCCCCTTCCACCCTTACTATACCATCAAAGATATTCTAGGAATCATAATTATACTTCTACTATTAATAATTTTAGTATTATTCTTTCCCGACTTACTAGGAGACCCTGACAATTATATGCCAGCTAACCCACTCAACACCCCTCCACACATCAAACCAGAATGATACTTCCTATTTGCTTACGCCATCCTACGCTCCATCCCTAATAAACTAGGAGGTGTACTTGCCCTAATTCTATCTATCCTTATTCTAGCCTTCCTACCCTTCCTTCACACCTCAAAACAACGCAGCCTAATTTTCCGCCCAATCACCCAAACCCTATACTGACTTCTAGTAGCAAATCTACTCATCCTAACCTGAATCGGAGGGCAACCAGTAGAACACCCATTCATCATTATTGGACAACTAGCCTCCATTAGTTACTTCTCCATTATCCTTATTCTAATACCAATCTCAGGTATAATCGAAAATAAAATACTA------AAATGAAAC------------------------------------------------------
+Seq12 ATGACAAACATCCGAAAAACTCATCCCTTAATAAAAATTATTAATCATTCATTCATTGATCTTCCCGCACCATCCAACATCTCATCATGATGAAATTTCGGCTCCCTATTAGGAATCTGCCTAACAGTACAAATTGCCACAGGCCTATTTCTAGCCATACATTATACATCAGATACAACAACAGCATTCTCATCAGTAGCCCACATTTGCCGAGACGTAAATTACGGATGATTTATCCGATATATACATGCAAACGGAGCTTCCATATTTTTCATATGCCTATTCCTCCACGTAGGACGAGGAATATATTACGGATCCTACACATTTCTAGAAACATGAAATATCGGAGTAATTCTTCTATTTGCAGTTATAGCCACTGCATTCATAGGATATGTCCTTCCATGAGGACAAATATCATTTTGAGGAGCTACAGTAATTACAAATCTACTCTCAGCCATCCCATACATTGGCAGTACTTTAGTAGAGTGAATCTGAGGTGGATTCTCAGTAGACAAAGCTACTTTAACACGCTTTTTCGCATTTCACTTTATCTTACCATTCATCATTGCAGCCCTTGCAATCGTTCATTTATTATTCTTACATGAAACAGGCTCAAATAACCCAATAGGACTAAACTCAGACGCAGACAAAATTCCATTTCACCCCTACTATACTACCAAAGATATTCTAGGAATTTTAATTATACTAACACTACTAATAATCCTAGTATTATTCTTTCCAGACCTACTAGGAGACCCCGACAACTATATACCAGCCAATCCACTCAACACCCCTCCTCATATTAAACCAGAATGATATTTTCTATTTGCCTATGCCATCCTTCGTTCCATCCCTAACAAACTAGGAGGTGTAGTGGCCTTAATCCTATCTATCCTTATCCTAGCCCTCCTACCACTCCTACATACCTCAAAACAACGCAGCCTAATATTCCGCCCAATTACCCAAACTCTTTACTGAATACTAGTAGCAAACTTAATTATCTTAACCTGAATCGGAGGTCAACCCGTAGAACACCCATTCATCATTATTGGCCAACTAGCCTCCATCAGCTACTTCTCTATTATTCTCATTCTAATACCAATCTCAGGCATCATTGAAAACAAAATATTA------AAATGAAAC------------------------------------------------------
+Seq13 ATGACAAACATCCGAAAAACCCATCCCCTATTCAAAATTATTAATCACTCATTCATTGACCTTCCAGCCCCATCCAACATCTCATCATGATGAAACTTCGGTTCACTTCTTGGAATCTGCTTAATAGTCCAAATTTTAACTGGCTTATTCTTAGCTATACACTACACCTCCGACACACTAACAGCATTCTCATCAGTAACCCACATCTGTCGAGACGTTAATTACGGCTGATTGGTACGATATATACACGCAAATGGAGCCTCAATATTCTTCATCTGCCTATTTATACACGTAGGACGAGGTATATACTACGGATCATACACATTTTTAGAAACATGAAACATCGGGGTAATTCTTTTATTTACAGTAATAGCTACCGCATTTATAGGTTATGTACTCCCATGAGGACAAATATCATTTTGAGGGGCAACAGTAATTACAAACTTACTATCTGCCATTCCATACATTGGAACTACTTTAGTAGAATGAATCTGAGGAGGATTCTCAGTAGATAAAGCCACCCTAACCCGATTCTTCGCATTTCACTTCATTTTACCATTCATCATTACAGCCCTCGTAATTGTTCACCTCTTATTCCTGCACGAAACAGGCTCCAACAACCCAACAGGACTAAATTCAGACGCAGACAAAATTCCATTTCATCCATATTATACCATCAAAGACATTCTAGGGATATTAATTATACTAGTACTCCTAATAATTCTAGTCTTATTCTTTCCAGACTCATTAGGAGACCCAGACAACTATATACCAGCCAACCCACTTAACACCCCCCCACATATCAAACCAGAATGATACTTCCTATTTGCCTACGCTATTCTACGGTCCATCCCTAATAAACTAGGAGGGGTACTAGCTCTAATTATATCCATTCTAATCCTAGTTTTTTTACCTTACCTTCATACCTCAAAACAACGCAGTCTAATATTCCGGCCAATTACTCAAATATTATACTGACTATTAGTAGCAAACTTACTAATTCTAACCTGAATCGGAGGTCAACCTGTAGAACACCCATTTATTATCATTGGTCAACTAGCCTCTATCAGCTATTTCTCCATTATTCTAATCCTCATACCAATTGCAGGCATCATCGAAGACAAAATACTA------AAATGAAAC------------------------------------------------------
+Seq14 ATGATCAACATCCGAAAAACTCATCCATTAGTTAAAATTATCAACAACTCATTCATTGACCTTCCAACACCATCAAACATTTCAACATGATGGAACTTTGGGTCCCTGTTAGGAGTGTGTCTGATCTTGCAAATCTTAACAGGCTTATTTCTAGCCATACACTATACATCAGATACAGCTACAGCCTTTTCATCAGTCGCACACATTTGTCGAGACGTCAACTATGGGTGATTTATCCGATATATACATGCCAATGGGGCCTCTATATTTTTTATCTGCCTATTTATACACGTAGGGCGAGGCTTATACTATGGATCATACCTATTTCCAGAGACATGGAATATCGGAATTATTCTCCTACTTACAATTATAGCCACCGCATTTATAGGATACGTCCTACCCTGAGGCCAAATGTCCTTCTGAGGAGCGACTGTCATCACCAACCTACTATCGGCCATTCCCTACATCGGAACGAACCTAGTAGAATGAATCTGAGGGGGCTTTTCCGTAGATAAGGCGACCCTAACACGATTCTTTGCTTTCCACTTTATCCTTCCATTTATCATCTCAGCACTAGCAATAGTCCATCTATTATTCCTTCACGAAACAGGATCTAATAACCCCTCCGGAATTCCATCTGACCCAGACAAAATCCCATTTTACCCCTATCATACAATTAAAGACATCCTAGGCGTCCTATTTCTTGTCCTCGCCTTAATAACCCTGGCTTTATTCTCACCAGACCTGTTAGGAGACCCTGATAACTATACCCCTGCAAATCCACTAAGTACCCCGCCACATATTAAGCCTGAATGGTACTTTCTATTTGCCTACGCTATCCTGCGATCCATTCCTAATAAACTAGGAGGGGTGCTAGCTCTAATCTTCTCTATTCTAATTCTAACTATTATTCCACTATTACATACATCCAAACAACGAAGCATGATATTCCGACCTCTAAGTCAATGCTTATTCTGACTCCTAGTAGCAGACCTACTCACACTAACATGAATTGGAGGACAGCCAGTAGAACACCCCTTCATTATTATTGGGCAATTGGCCTCTATTCTCTACTTTACAATTCTTCTAGTACTTATACCTATCACTAGCATTATTGAGAATAGCCTCTCA------AAATGA------------------------------------------------------AGA
+Seq15 ATGAAAATTTTACGGAAAAATCACCCGCTACTTAAAATTGTTAATCATTCATTTATTGACCTCCCAACCCCATCTAACATCTCATCTTGATGGAATTTCGGGTCACTACTCGGTGTGTGCCTAGTAATCCAAATTCTGACCGGCCTATTCCTAGCCATACACTACACATCAGACACAACCACAGCATTCTCCTCAGTTGCCCACATTTGCCGAGATGTAAACTACGGATGATTAATTCGCTACCTTCACGCTAACGGAGCCTCCATATTCTTTATCTGCCTTTTCATCCACGTAGGCCGAGGAATCTACTACGGCTCCTATGTCCTCTCAGAAACCTGAAACATCGGTATCATCCTGTTCCTTACAACTATAGCAACAGCATTCGTAGGGTATGTTCTACCGTGGGGACAAATATCCTTCTGAGGAGCTACCGTAATCACAAACCTCCTCTCAGCAATCCCATACATCGGAAGCACCCTTGTTGAATGAATTTGAGGGGGCTTCTCAGTTGATAAAGCCACCCTAACCCGCTTCTTCGCCTTCCATTTTATTCTGCCTTTTATCATCACGGCCTTCGCCTTAGTCCACCTATTATTCCTTCACGAGACAGGATCCAACAACCCATCAGGCTTAAACTCAGACTCCGACAAAATCCCATTCCACCCCTACTACACAATCAAAGATCTCCTGGGCATCTTCCTCCTATTATTAATTCTCATAACTTTAGCCCTATTTTTCCCAGATGTCCTTGGAGACCCAGACAATTTTACCCCAGCAAACCCCCTCAACACTCCAGCACACATCAAGCCAGAATGATATTTCCTATTTGCTTACGCCATCCTTCGGTCTATCCCCAACAAACTTGGAGGTGTGTTAGCCCTTATTCTCTCTATTCTCATTTTAGCAACGTTCCCACTACTAAATACTTCCAAACAACACGGTTTAATTTTCCGACCTATCACACAAACCATTTACTGAACTTTTATCGCCAACCTTCTCGTACTTACATGAATTGGGGGGCAACCCGTTGAATACCCATTCACAACAATTGGACAAATCGCATCAATCACCTACTTCACTATTATTATCATTTTAATGCCAGTCTCTAATACCATCGAGAACAACATCATCAAACTT------------------------------------------------------------TAG
+Seq16 ATGAAAATTTTACGGAAAAACCACCCGCTACTTAAAATTGTTAATCACTCATTTATTGACCTCCCAACCCCATCCAACATCTCATCTTGATGAAATTTTGGGTCACTACTCGGTGTATGCCTAATAATTCAAATTCTGACTGGCCTATTCCTAGCCATACACTACACATCAGACACAACCACAGCATTCTCTTCAGTTGCCCACATTTGCCGAGACGTGAACTACGGATGATTAATCCGCTACCTCCACGCCAACGGAGCCTCCATATTCTTTATCTGCCTTTTTATCCACGTAGGTCGAGGAATCTACTACGGCTCCTATGTCCTCTCAGAAACCTGAAACATCGGCATCATCCTATTCCTTACAACTATGGCAACAGCATTCGTAGGGTATGTACTACCATGAGGACAAATATCTTTCTGAGGGGCTACTGTAATCACAAATCTCCTCTCAGCAATCCCCTACATCGGAAGCACCCTTGTTGAATGAATTTGAGGGGGCTTCTCAGTTGATAAAGCCACCCTGACCCGCTTCTTCGCCTTCCATTTTATTCTGCCTTTTATCATCACGGCCTTCGCTTTAGTCCACCTACTATTCCTCCACGAGACAGGATCTAACAATCCATCGGGCTTAAACTCAGACTCCGACAAAATCCCATTCCACCCCTACTACACAATCAAAGATCTCCTGGGCATCTTCCTCCTATTATTAGCTCTCATAATTTTAGCCCTATTTTTCCCAGATGTCCTCGGGGACCCAGACAATTTTACCCCAGCAAACCCTCTCAACACTCCAGCACACATTAAGCCAGAGTGGTATTTCCTATTTGCTTACGCCATCCTTCGATCTATCCCCAACAAGCTTGGAGGCGTATTAGCCCTTATCCTCTCTATTCTCATTTTAGCAATTTTCCCACTACTGAATGTTTCCAAACAACACGGTTTAATTTTCCGACCTATCACACAAACCATTTACTGAACTTTTATTGCCAACCTTCTCGTACTTACATGAATTGGGGGGCAACCCGTTGAGTACCCATTCACAACAATTGGACAAATCGCATCAATCACATACTTCACTAT-ATTATCATTTTAATGCCAGTCTCTAATACCATCGA-AACAATATCATCAAACTC------------------------------------------------------------TAG
+Seq17 ATGAAAATTTTACGGAAAAATCACCCACTACTTAAAATTGTTAATCACTCATTCATTGACCTACCAACCCCATCTAGCATCTCGTCTTGATGGAATTTTGGGTCACTACTTGGTGTGTGTCTGATAATTCAAATTCTGACCGGCCTATTCCTAGCCATACACTACACATCAGACACAACCACAGCATTCTCTTCAGTAGCTCACATCTGTCGAGATGTAAACTACGGATGATTAATCCGCTACCTACATGCTAACGGGGCTTCCATATTCTTTATCTGTCTCTTCATCCACGTAGGCCGAGGGATCTATTACGGTTCCTATGTCCTCTCAGAAACTTGAAACATCGGTATCATTCTATTTCTTACAACTATAGCAACAGCATTCGTAGGCTATGTGTTACCATGAGGACAAATATCTTTCTGAGGGGCCACTGTAATCACAAATCTCCTCTCAGCAATCCCCTACATCGGAAGCACCCTTGTTGAATGAATCTGAGGCGGCTTCTCAGTTGACAAAGCCACCTTAACCCGTTTCTTCGCCTTTCACTTTATCCTACCTTTTATCATCACAGCCTTGGTCCTAGTTCACCTACTGTTTCTTCACGAAACAGGATCCAACAACCCATCAGGTTTAAACTCAGACTCCGACAAAATCCCGTTCCACCCATACTACACAATCAAAGATCTCCTGGGCATCCTCCTTCTATTATTAGCTCTTATAATTCTAGCCTTATTTTTCCCCGATATCCTCGGAGACCCAGACAACTTTACCCCGGCAAACCCCCTCAACACTCCAGCACACATTAAGCCAGAATGGTATTTCCTATTTGCATACGCCATCCTCCGATCTATCCCCAATAAGCTTGGAGGTGTTCTAGCCCTCATCCTCTCTATTCTCATCCTAGCAACATTCCCATTATTAAATACTTCCAAACAACACGGTTTAATTTTCCGACCTATTACACAAACCATCTACTGAACTTTTATTGCTAACCTTCTTGTACTTACATGAATTGGGGGCCAACCTGTCGAATACCCATTCACAACAATTGGACAAATCGCATCAATCACCTACTTCACTATCATTATCATTTTAATGCCAGTCTCTAATACTATCGAAAATAATATCATCAAACTC------------------------------------------------------------TAA
+Seq18 ATGAAAATTTTACGTAAAAATCACCCACTACTCAAAATTATAAATCACTCATTCATTGATCTGCCAGCTCCATCTAACATCTCATCCTGATGGAACTTTGGATCCCTACTTGGTACATGCCTAGTAATCCAAATCCTAACAGGCCTATTCTTAGCTATACACTACACATCAGACACAACCACAGCATTCTCCTCAGTAGCTCATATCTGCCGAGACGTAAACTACGGATGATTAATCCGCTACTTACACGCTAATGGAGCCTCCATATTCTTCATCTGCCTCTTCATCCACGTAGGCCGAGGAATCTACTACGGCTCCTACGTCCTTTCAAAAACTTGAAATATCGGCATTATCTTATTCCTCACAACTATAGCAACAGCATTTGTGGGGTACGTACTTCCATGAGGACAAATATCCTTCTGAGGGGCCACTGTAATTACAAACCTCCTCTCAGCCATCCCCTACATCGGAAGCACCCTAGTTGAATGAATCTGAGGAGGCTTTTCAGTTGACAAAGCTACCCTCACCCGCTTCTTCGCCTTCCACTTCATTCTACCTTTTATCATTGCAGCCTTCACCCTAGTTCACCTATTATTTCTTCACGAAACAGGATCCAACAACCCCTCAGGCTTAAACTCAAACTCTGATAAAATTCCATTCCACCCCTACTACACAACCAAAGATCTTCTAGGCATCTTTCTGCTACTACTAGCTCTCATAATTTTAACCTTATTTTTCCCAGACATCTTAGGAGACCCAGACAATTACACTCCAGCAAACCCTCTCAACACTCCAGCACACATTAAACCAGAGTGATATTTCCTATTTGCCTACGC-ATCCTTCGATCAATTCCTAACAAACTAGGAGGCGTCTTAGCCCTCATCCTTTCCATTCTCATCCTAGCAACATTCCCACTACTGAATAATTCCAAACAACACGGTTTAATTTTCCGACCTATTACACAAACCATCTACTGAATCTTCATTGCTAACCTTCTTGTTCTTACATGAATTGGAGGCCAACCTGTCGAGCTCCCATTCACAACAATTGGACAAATCGCATCAATTACCTACTTCGCTATCATTATCATCCTAATTCCAATCTCTAATGCTATCGAGAACAATATCATCAAGCTT------------------------------------------------------------TAG
+Seq19 ATGAAAATTTTACGGAAAAATCACCCGCTACTCAAAATTGTTAATCACTCATTCATTGACCTACCAACTCCATCTAACATCTCATCCTGATGAAATTTTGGATCCCTACTAGGCATATGCCTAATAATCCAAATTTTAACAGGCCTATTCCTAGCCATACACTACACATCAGACACAACCACAGCATTCTCCTCAGTAGCACATATCTGCCGAGATGTAAACTACGGATGATTAATCCGCTACTTGCACGCTAATGGAGCCTCCATATTCTTTATCTGCCTCTTCATCCACGTAGGCCGAGGTATTTACTATGGTTCCTATACCCTCTCAGAAACCTGAAACATTGGCATCATCTTATTCCTCACAACTATAGCAACAGCATTTGTAGGATATGTACTCCCATGAGGACAAATATCCTTCTGGGGTGCCACCGTAATCACAAACCTCCTCTCAGCTATTCCCTACATCGGAAACACCCTAGTTGAATGAATCTGAGGTGGTTTTTCAGTTGACAAAGCCACCCTCACCCGCTTCTTCGCTTTTCACTTTATCTTACCCTTTATCATCACAGCCTTCGCCCTAGTTCACCTATTATTTCTTCACGAAACAGGGTCCAACAATCCATCAGGCCTAAATTCAGACTCTGACAAAATCCCGTTTCACCCCTACTACACAACCAAAGACCTCCTAGGCATCTTCCTTTTATTATTAGTTCTCATAATTTTAGCCTTATTTTTCCCAGACATTCTCGGAGACCCAGACAATTTTACCCCAGCAAATCCCCTCAACACCCCAGCACACATTAAACCAGAATGGTATTTTCTATTTGCCTATGCCATTCTCCGATCCATTCCCAACAAATTAGGGGGTGT-TTAGCCCTCGTCCTCTCCATTCTTATCCTAGCAGCATTCCCACTATTAAATACTTCCAAACAACACGGTTTAATTTTCCGACCTATCACACAAGTCATTTACTGAATTTTCATTG-TAACCTTCTCGTACTTACATGAATCGGAGGGCAGCCTGTCGAATATCCA-TCACAATAATTGGACAAATCGCATCAATTACATACTTCGCTATCATTATTATTCTTATCCCAGTCTCCAACACTATCGAGAACAATATTATTAAGCTC------------------------------------------------------------TAA
+Seq20 ATGAAAATCTTACGGAAAAATCATCCACTGCTTAAAATTGTTAATCACTCATTCATTGATCTACCAACTCCATCCAACATCTCATCCTGATGGAATTTTGGATCTCTTCTAGGAATATGCTTAGTAATCCAAATTCTAACAGGCCTATTCCTAGCCATACACTACACATCAGACACAACCACAGCATTCTCCTCAGTAGCCCATATCTGCCGAGATGTAAACTACGGATGGCTGATCCGCTACTTACACGCCAACGGGGCCTCCATATTCTTTATCTGCCTTTTCATCCACGTAGGCCGAGGGATTTACTACGGCTCCTACGTCCTCTCAGAAACCTGAAACATCGGCATCATCTTACTTCTCACAACCATAGCAACAGCATTTGTGGGATACGTACTCCCATGAGGACAAATATCTTTTTGAGGGGCTACCGTAATCACAAACCTTCTTTCAGCCATCCCATACATCGGAAACACCCTAGTTGAATGAATCTGAGGTGGCTTTTCAGTCGACAAAGCTACCCTCACTCGCTTTTTCGCTCTCCATTTCATCTTACCCTTTATCATTGCAGCCTTTGCCCTAGTTCACCTCCTGTTTCTCCACGAAACAGGGTCCAATAACCCATCAGGCTTAAACTCAGATTCTGACAAAATTCCATTTCACCCCTACTACACTACCAAAGATCTCTTAGGCATCTTCCTTTTATTATTAGTTCTCATAATTTTAGCCTTATTTTTCCCAGACGTCCTAGGAGACCCAGACAATTTTACCCCAGCAAATCCTCTCAACACCCCAGCACACATTAAACCGGAGTGATATTTTCTATTTGCCTACGCTATCCTCCGATCCATTCCCAACAAATTAGGGGGCGTTCTAGCCCTCGTCCTTTCCATCCTCATCCTAGCAGCATTCCCATTACTAAATACTTCCAAACAACACGGTTTAATTTTCCGACCTGTCACACAAGTCATTTACTGAATCTTTATCGCTAACCTTCTTGTACTTACATGAATCGGAGGCCAACCTGTCGAATACCCATTCACAACAATCGGACAAATCGCGTCAGTTACCTACTTCGCAACTATCATTATCCTAATCCCAGTCTCTAATACTATCGAAAATAATATTATCAAGCTC------------------------------------------------------------TAA

data/test/testdata/20start.nw

@@ -0,0 +1,2 @@
+((Seq14,Seq10),((Seq18,((Seq20,Seq19),(Seq17,(Seq15,Seq16)))),((Seq13,(Seq11,Seq12)),((Seq5,(Seq4,(Seq2,(Seq7,(Seq3,Seq6))))),(Seq9,Seq8)))),Seq1);
+((Seq14,Seq10),((Seq18,((Seq20,Seq19),(Seq17,(Seq15,Seq16)))),((Seq13,(Seq11,Seq12)),((Seq5,(Seq4,(Seq2,(Seq7,(Seq3,Seq6))))),(Seq9,Seq8)))),Seq1);

data/test/testdata/20start.nw.pruned_to.9

@@ -0,0 +1 @@
+((Seq5,(Seq4,(Seq2,(Seq7,(Seq3,Seq6))))),(Seq9,Seq8),Seq1);

data/test/testdata/9

@@ -0,0 +1,10 @@
+9 1200
+Seq1 ATGACCAACATTCGAAAATCACACCCCCTTATCAAAATCGTTAATCACTCATTCATCGATTTACCCACCCCACCTAACATTTCAGCATGATGAAACTTCGGCTCCCTACTAGGAGTCTGCCTAGTCCTACAGATCCTAACCGGCCTTTTCCTAGCCATACACTACACATCAGACACAATAACCGCCTTTTCATCAGTTACTCACATCTGCCGCGACGTCAACTACGGCTGAATTATTCGATACATGCACGCCAACGGAGCCTCTATATTCTTTATCTGCCTATACATGCATGTAGGACGAGGAATATACTACGGCTCCTACACCTTCTCAGAAACATGAAATATTGGAATCATACTACTACTCACAGTCATAGCCACAGCCTTCATAGGATATGTCTTACCATGAGGTCAAATATCTTTCTGAGGAGCAACTGTAATTACCAACCTCCTATCAGCAATTCCTTACATCGGCACTAATCTAGTAGAGTGAATTTGAGGAGGTTTCTCGGTAGACAAAGCTACCCTGACACGATTCTTTGCCTTCCACTTTATCCTTCCATTCATCATCTCAGCCCTAGCAGCAGTACACCTCTTATTTCTCCACGAGACAGGATCCAATAACCCCTCAGGAATCACATCCGACTCAGACAAAATTCCATTCCACCCATACTACATAATCAAGGACATTCTAGGTCTCCTAATACTAATTTTAATACTCACACTACTCGTCCTCTTCTCACCAGACCTGTTAGGAGATCCAGACAACTACATCCCCGCCAACCCCCTAAACACTCCTCCCCATATTAAACCCGAATGATATTTTTTATTCGCATACGCAATCCTCCGATCCATCCCTAACAAATTAGGAGGAGTCCTAGCCCTAATATTCTCCATCCTAATCCTAGCAATCATTCCAATTTTCCACACCTCCAAACAACGAGGAATAATATTTCGACCACTAAGCCAATGCTTATTCTGACTCCTAGTAGCAGACCTCCTCACCCTAACATGAATTGGCGGCCAACCTGTAGAACACCCCTTTATTACCATCGGCCAACTAGCCTCCATTCTATACTTCTCAACCCTCCTAGTTCTAATACCTATTTCAGGCATCATCGAAAACCGCCTCCTA------AAATGA------------------------------------------------------AGA
+Seq2 ATGAAAATTATACGAAAAACACACCCACTCCTAAAAATCATTAACCATGCATTCGTCGACCTCCCTGCACCCTCCAACATCTCATCATGATGAAACTTCGGCTCTCTATTAGGAGTATGCCTAATAATCCAAATCCTCACAGGACTGTTTCTAGCAATACACTACACCTCAGACACTATAACAGCATTCTCATCCGTAACCCACATCTGCCGAGACGTAAATTACGGTTGACTGATTCGATACCTCCATGCAAACGGAGCCTCCATGTTCTTCATGTGCTTATTCATACACGTAGGACGAGGCATCTACTATGGGTCCTACACCTTTATAGAGACATGAAACCTTGGTATTATTCTACTGTTTGCCGTAATAGCAACTGCATTTATAGGATATGTCCTCCCATGGGGGCAAATATCCTTCTGAGGGGCCACAGTCATCACAAACCTACTTTCAGCCATCCCCTACATCGGTACTAACCTAGTAGAATGAATCTGAGGCGGATTTTCAGTAGACAAAGCCACCCTTACACGCTTCTTCGCATTCCACTTTATCCTCCCCTTTATTATTGCAGCTCTGGCCATGGTACACCTACTTTTTCTCCACGAAACAGGCTCTAATAACCCCACAGGAATGAACTCCGATGCAGACAAAATCCCCTTCCACCCCTACTACACAATCAAAGACCTCTTAGGTGTATTCCTCATACTGTCAGTCCTCCTCCTATTAGTACTTTTCTCCCCAGACCTATTAGGAGACCCCGACAACTATACACCAGCTAACCCCCTAAACACCCCTCCTCACATTAAGCCAGAATGATACTTTCTATTTGCATATGCTATCCTACGCTCTATCCCCAACAAACTAGGAGGCGTATTAGCCCTAGTACTATCCATCCTAATCCTAGCTTTTATACCTCTCACCTACACCTTAAAACAACGAATCTTAATATTCCGCCCAATCAGCCAGACCATATTCTGAATCCTAGCAGCCAACCTACTTATCCTAACCTGAATCGGAGGACAACCCGTAGAACACCCCTTCATCATTATTGGCCAACTAGCTTCAATCAGCTACTTCTCCATCATTTTAATTCTAATACCAATCTCAGGACTAATCGAAAACAAAATACTAAAACTA------AAC---------------------------------------------------T--
+Seq3 ATGAAAATTATACGAAAAACACACCCACTCCTAAAAATCATTAATCACGCATTCGTCGACCTCCCTGCACCCTCTAACATCTCATCATGATGAAACTTCGGCTCCCTATTAGGAGTATGCCTAATAATCCAAATCCTCACAGGACTATTTCTAGCAATACACTACACCTCCGACACTACAACAGCATTCTCATCCGTAACCCACATCTGCCGAGACGTAAACTACGGCTGATTAATTCGATACCTCCATGCAAATGGGGCTTCCATATTCTTCATGTGCTTATTCATACACGTAGGACGAGGCATTTATTATGGGTCTTACACCTTCACAGAGACATGAAACCTTGGTATCATTCTACTGTTTGCCGTAATAGCAACTGCATTTATAGGATATGTCCTTCCATGGGGACAAATATCCTTCTGAGGGGCCACAGTCATTACAAACCTACTCTCAGCCATCCCCTACATCGGCACTGACCTGGTAGAGTGAATCTGAGGCGGGTTTTCAGTAGACAAAGCCACCCTTACACGCTTCTTCGCATTCCACTTTATTCTCCCCTTTATCATTGCAGCCCTAGCCATAGTACACCTACTCTTTCTACACGAAACAGGCTCTAATAACCCCACAGGAGTGAACTCCGATGCAGACAAAATCCCCTTCCACCCCTACTACACAATCAAAGACCTTTTAGGTGTATTCCTCATACTATTAGTCCTCCTCCTATTAGTACTATTCTCCCCAGACCTACTAGGAGACCCCGACAACTACACACCAGCTAACCCCCTGAACACCCCTCCTCACATTAAACCAGAATGATATTTCCTATTCGCATATGCTATTCTACGCTCCATCCCCAACAAACTCGGAGGCGTACTAGCTCTAGTAATATCTATCCTAATCCTAATTTTCATACCCCTCACCCACACCTCAAAACAACGAAGCTTAATATTCCGCCCAATCAGTCAGGCTATATTCTGAATCCTAACAGCTAACCTACTTATCCTAACCTGAATCGGAGGACAACCCGTAGAACACCCCTTTATCATTATCGGCCAACTAGCTTCAATCAGCTATTTCTCCATCATTTTAATCCTAATACCAATCTCAGGACTAATTGAAAACAAAATACTAAAATTA------AAC---------------------------------------------------T--
+Seq4 ATGAAAATTATACGAAAAACACACCCACTCATAAAAATTATCAACCACGCATTCATCGATCTCCCTGCACCCTCCAACATCTCATCATGATGAAACTTTGGTTCTCTATTAGGAGTATGCCTAATAGTCCAAATCCTCACAGGCCTATTCTTAGCAATACACTACACCTCCGACACTATAACAGCATTCACATCCGTAACCCACATCTGCCGAGACGTAAACTACGGCTGATTAATTCGATATCTCCATGCAAACGGAGCCTCCATATTCTTCGTATGCTTGTTTATACACGTAGGACGAGGAATCTACTATGGATCTTACACCTTTACAGAAACATGAAATCTTGGTGTTATTCTACTATTTGCCGTAATAGCAACTGCATTTATAGGATATGTACTTCCATGAGGACAAATATCCTTCTGAGGAGCCACAGTCATTACAAACCTTCTCTCAGCTATTCCCTACATCGGTACTAACCTAGTAGAATGAATTTGAGGGGGGTTCTCAGTAGACAAAGCCACCCTCACACGCTTCTTCGCATTCCACTTTATCCTTCCATTTATCATTGCAGCCCTAGCCATAGTACACCTACTATTCCTCCACGAAACAGGCTCTAATAACCCCACAGGAATGAACTCTGACGCAGATAAAATTCCCTTTCACCCCTACTATACAATCAAAGACCTCTTAGGCGTATTTCTCATACTACTAGTTCTCCTACTATTAGTACTATTTTCCCCAGACTTATTAGGAGACCCCGACAACTACACACCAGCCAACCCCCTAAATACCCCTCCCCACATTAAACCAGAGTGATATTTTCTATT-GCATACGCTATCCTACGCTCTATCCCCAATAAACTTGGAGGCGTACTAGCCCTAGTACTATCTATCCTAATCCTAATTCTCATACCCTTAATCCATACCTCAAAACAACGAAGCTTAATATTCCGTCCAATTAGCCAAATCATATTCTGAATCCTAACAGCTAACCTACTCATCCTGACCTGAATCGGAGGACAACCCGTAGAACATCCCTTTATCATTATCGGCCAACTAGCTTCAATCAGCTATTTCTCCATTATTCTAATCCTAATACCGATCTCAGGACTAATTGAAAATAAAATACTAAAATTA------AAC---------------------------------------------------T--
+Seq5 ATGAAAAACATACGAAAAACGCAACCACTCCTAAAAATTATTAACCACGAATTCATTGA-TTTCCTGAAACATCCAA-ATCTCATCATGATGAAACTTTGGCTCTCTACTAGGCATCTGCCTAGTAATCCAGATCCTAACAGGCTTATTCCTAGCAATACACTATACCTCCGACACCACCACAGCATTTTCATCTGTAACCCACATTTGCCGAGACGTAAACTACGGCTGACTGATTCGTTACCTCCATGCAAATGGAGCCTCCATATTCTTCATGTGCCTGTTCATACATGTAGGACGGGGAATCTACTACGGATCTTATACCTTCATAGAAACCTGAAATCTCGGCATTATTCTACTGTTCGCCGTAATAGCAACTGCATTTATAGGATATGTACTCCCATGAGGACAGATATCCTTCTGAGGGGCCACAGTCATTACAAATCTACTCTCAGCTATCCCCTACATCGGAACTAATCTAGTAGAGTGAATTTGAGGAGGCTTCTCAGTAGACAAAGCCACTCTAACACGCTTTTTCGCATTCCACTTTATCCTACCCTTTATCATTGCAGCCCTAGCTATAGTCCACCTACTATTCCTCCACGAAACAGGATCTAACAA-CCCACCGGGATAAACTCTGACGCAGATAAAATCCCCTTTCATCCCTACTACACAATTAAAGATCTCCTAGGAGTATTCCTAATATTAACAGCCCTACTCTTATTAGTCCTCTTCTCCCCAGACTTATTAGGAGACCCCGACAACTACACACCAGCCAACCCCCTAAACACCCCTCCCCACATCAAACCAGAATGATATTTCCTATTTGCATACGCCATCCTACGCTCTATTCCTAACAAACTCGGAGGAGTACTAGCCCTAGTGCTATCAATCCTAATCCTAATTTTTTTACCCTTCATCCACACTTCCAAACAACGAAGCCTAATATTCCGCCCAATCAGCCAAACCATATTTTGAATCCTAGCAGCAAATCTTCTTGTCCTAACCTGAATCGGAGGACAACCTGTAGAATACCCCTTCACCATTATTGGCCAACTAGCCTCAATCAGTTATTTCTCTATTATCCTAATCCTACTACCAATCTCAGGTCTAATC-AAAATAAAATAATAAAAATA------AAC---------------------------------------------------T--
+Seq6 ATGAAAATTATACGAAAAACACACCCACTCCTAAAAATCATTAATCACGCATTCGTCGACCTCCCTGCACCCTCTAACATCTCATCATGATGAAACTTCGGCTCCCTATTAGGAGTATGCCTAATAATCCAAATCCTCACAGGACTATTTCTAGCAATACACTACACCTCCGACACTACAACAGCATTCTCATCCGTAACCCACATCTGCCGAGACGTAAACTACGGCTGATTAATTCGATACCTCCATGCAAATGGGGCTTCCATATTCTTCATGTGCTTATTCATACACGTAGGACGAGGCATTTATTATGGGTCTTACACCTTCACAGAGACATGAAACCTTGGTATCATTCTACTGTTTGCCGTAATAGCAACTGCATTTATAGGATATGTCCTTCCATGGGGACAAATATCCTTCTGAGGGGCCACAGTCATTACAAACCTACTCTCAGCCATCCCCTACATCGGCACTGACCTGGTAGAGTGAATCTGAGGCGGGTTTTCAGTAGACAAAGCCACCCTTACACGCTTCTTCGCATTCCACTTTATTCTCCCCTTTATCATTGCAGCCCTAGCCATAGTACACCTACTCTTTCTACACGAAACAGGCTCTAATAACCCCACAGGAGTGAACTCCGATGCAGACAAAATCCCCTTCCACCCCTACTACACAATCAAAGACCTTTTAGGTGTATTCCTCATACTATTAGCCCTCCTCCTATTAGTACTATTCTCCCCAGACCTACTAGGAGACCCCGACAACTACACACCAGCTAACCCCCTGAACACCCCTCCTCACATTAAACCAGAATGATATTTCCTATTCGCATATGCTATTCTACGCTCCATCCCCAACAAACTCGGAGGCGTACTAGCTCTAGTAATATCTATCCTAATCCTAATTTTCATACCCCTCACCCACACCTCAAAACAACGAAGCTTAATATTCCGCCCAATCAGTCAGGCTATATTCTGAATCCTAACAGCTAACCTACTTATCCTAACCTGAATCGGAGGACAACCCGTAGAACACCCCTTTATCATTATCGGCCAACTAGCTTCAATCAGCTATTTCTCCATCATTTTAATCCTAATACCAATCTCAGGACTAATTGAAAACAAAATACTAAAATTA------AAC---------------------------------------------------T--
+Seq7 ATGAAAATTATACGAAAAACACACCCACTCCTAAAAATCATTAATCACGCATTCGTCGACCTCCCTGCACCCTCTAATATCTCATCATGATGAAACTTCGGCTCCCTATTAGGAGTATGCCTAGTAATCCAAATCCTCACAGGATTATTTCTAGCAATACACTACACCTCCGACACTATAACAGCATTCTCATCCGTAACCCACATCTGCCGAGACGTAAACTACGGCTGATTAATTCGATACCTCCATGCAAATGGGGCTTCCATATTCTTCGTGTGCTTATTCATACACGTAGGACGAGGCATTTATTATGGATCTTACACCTTCACAGAGACATGAAACCTTGGTATCATTCTACTGTTTGCCGTAATAGCAACTGCATTTATAGGGTATGTCCTTCCATGGGGACAAATATCCTTCTGAGGGGCCACAGTCATTACAAACCTACTCTCAGCCATCCCCTACATCGGCACTGACCTGGTAGAGTGAATCTGAGGCGGGTTTTCAGTAGACAAAGCCACCCTTACACGCTTCTTCGCATTCCACTTTATTCTCCCCTTTATCATTGCAGCCCTAGCCATAGTACACCTACTCTTTCTACACGAAACAGGCTCTAATAACCCCACAGGAGTAAACTCCGATGCAGACAAAATCCCCTTCCACCCCTACTACACAATCAAAGACCTTTTAGGTGTTTTCCTCATACTATTAGTCCTCCTCCTACTAGTACTATTCTCCCCAGATCTACTAGGAGACCCCGACAACTACACACCAGCTAACCCCCTGAACACCCCTCCTCACATTAAACCAGAATGGTATTTCCTATTCGCATATGCTATTCTACGCTCCATCCCCAACAAACTCGGAGGTGTACTAGCTCTAGTAATATCTATCCTAATCCTAATTTTCATACCCCTCACCCACACCTCAAAACAACGAAGCTTAATATTCCGCCCAATCAGTCAGGCTATATTCTGAATCCTAACAGCTAACCTACTTATCCTAACCTGAATCGGAGGACAACCCGTAGAACACCCCTTTATCATTATCGGCCAACTAGCTTCAATCAGCTACTTCTCCATTATTTTAATCCTAATACCAATCTCAGGACTAATTGAAAACAAAATACTAAAATTA------AAC---------------------------------------------------T--
+Seq8 ATGAAAAACATACGAAAATCACACCCACTACTAAAAATCATTAATCTCGCATTTATTGACCTACCCGCACCATCCAATATCTCATCATGATGAAACTTTGGGTCCCTTCTAGGAGTCTGTCTAGTAGTACAAATTATCACAGGACTATTTCTAGCAATACACTACACCTCTGATACCACAACAGCATTTTCATCTGTAACTCATATCTGCCGAGATGTAAACTACGGTTGATTGATTCGATATCTTCATGCAAACGGAGCCTCAATATTCTTCATGTGCCTATTTATACACGTAGGACGAGGAATCTACTACGGATCCTACACCTTTACAGAAACCTGAAATATTGGCATTATTCTACTGTTCGCCGTAATAGCAACTGCATTTATAGGATATGTGCTTCCCTGAGGACAAATATCCTTCTGAGGAGCCACAGTTATTACTAACCTTCTCTCAGCAGTTCCCTACATCGGTACTAATTTAGTAGAATGAATCTGAGGGGGGTTCTCAGTAGACAAAGCCACTCTTACACGCTTCTTCGCATTCCATTTTATCCTCCCATTCATCATTGCAGCCCTAGCTATAGTCCACCTACTTTTTCTCCACGAAACTGGATCCAATAACCCCACCGGAATCAACTCTGATGCAGACAAAATTCCATTCCATCCGTACTACACTATAAAAGACTTCCTAGGGGCCCTACTCATGTTAGTAGTTCTACTCCTACTTGTTTTATTTTCCCCAGATATTTTAGGCGACCCAGATAATTATACACCAGCTAACCCCCTAAACACACCTCCTCACATCAAACCAGAGTGATATTTCCTATTCGCCTACGCTATCCTACGTTCTATCCCCAATAAACTAGGAGGAGTGTTAGCTTTAGTACTATCCATCCTTGTCCTAGCCTTGCTACCTCTCATGCACACCTCAAAACAACGAAGCCTTATGTTCCGCCCAATTAGCCAAATCCTATTTTGAATACTAACAGCTAATCTTCTAATTCTAACCTGAATTGGGGGACAACCAGTAGAACACCCCTTCATTATCATTGGACAAGTAGCTTCAATCAGCTACTTCTCTATTATTTTAATCCTAATACCAATCTCAGGACTAATCGAAAACAAAATACTAAAACTT------------------------------------------------------------T--
+Seq9 ATGACAAACATCCGAAAAACACACCCCCTACTTAAAATTATTAATAACGCATTCATTGACCTACCAGCCCCATCCAACATTTCATCATGATGAAACTTCGGGTCTTTACTAGGAATCTGCTTAATCATCCAAATCATCACAGGACTTTTCCTAGCCATACATTACACCTCAGACACCTCAACAGCATTCTCATCTGTTACCCATATTTGCCGAGATGTAAACTACGGTTGACTTATTCGCTATCTTCATGCAAACGGAGCCTCCATATTCTTTGTCTGCTTATTTATACATGTTGGACGAGGAATCTATTACGGATCTTATACCTACATAGAAACATGAAATATCGGCATCATTCTACTGTTCGCCGTAATAGCAACTGCATTTATAGGATATGTACTTCCATGAGGACAAATATCTTTTTGAGGGGCCACAGTCATTACCAACCTACTATCAGCTATCCCTTACATTGGCACTAACTTAGTAGAATGAATTTGAGGTGGATTTTCCGTAGATAAAGCCACCCTAACACGATTCTTCGCCTTCCACTTTATTCTCCCATTTATCATCGCTGCCCTAGCCATAGTTCATCTTCTTTTCCTTCACGAAACAGGATCTAATAATCCTACCGGAATTAACTCCGACACTGACAAAATTCCCTTTCATCCTTACTACACAACAAAAGACCTATTAGGAGCTCTAATACTCATTATAGTCCTACTAGCACTAGTATTATTTTCACCTGACCTCCTAGGAGACCCAGATAACTACACACCAGCTAACCCATTAAATACACCTCCCCATATCAAACCAGAATGATATTTCTTATTCGCCTACGCAATCCTCCGATCCATCCCTAACAAACTAGGAGGAGTCTTAGCCCTGGTCTTATCAATCCTAGTCCTAGCAATCCTCCCACTAATCCACACCTCAAAACAACGAAGCCTCATATTCCGCCCAATTAGCCAAACCCTATTCTGAATCCTAGTGGCCAACCTATTAATCCTTACCTGAATCGGAGGACAACCCGTAGAACACCCCTTCATCATCATCGGCCAACTAGCTTCCATCAGCTACTTCACAATCATCCTAACTCTCATTCCTATCTCAGGCCTAATCGAAAATAAAATAATG------AAATGAAAC---------------------------------------------------T--

metadata

@@ -1,13 +1,13 @@
 --- !ruby/object:Gem::Specification 
 name: rnewick
 version: !ruby/object:Gem::Version 
-  hash: 27
+  hash: 25
   prerelease: 
   segments: 
   - 0
   - 1
-  - 0
-  version: 0.1.0
+  - 1
+  version: 0.1.1
 platform: ruby
 authors: 
 - Fernando Izquierdo-Carrasco
@@ -15,7 +15,7 @@ autorequire:
 bindir: bin
 cert_chain: []
 
-date: 2012-03-27 00:00:00 Z
+date: 2012-04-11 00:00:00 Z
 dependencies: 
 - !ruby/object:Gem::Dependency 
   type: :development
@@ -110,8 +110,13 @@ files:
 - Rakefile
 - VERSION
 - lib/rnewick.rb
+- rnewick.gemspec
 - test/helper.rb
 - test/test_rnewick.rb
+- test/testdata/20
+- test/testdata/20start.nw
+- test/testdata/20start.nw.pruned_to.9
+- test/testdata/9
 homepage: http://github.com/fizquierdo/rnewick
 licenses: 
 - MIT