rnewick 0.1.0 → 0.1.1
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- data/VERSION +1 -1
- data/lib/rnewick.rb +14 -5
- data/rnewick.gemspec +66 -0
- data/test/test_rnewick.rb +17 -2
- data/test/testdata/20 +21 -0
- data/test/testdata/20start.nw +2 -0
- data/test/testdata/20start.nw.pruned_to.9 +1 -0
- data/test/testdata/9 +10 -0
- metadata +9 -4
data/VERSION
CHANGED
@@ -1 +1 @@
|
|
1
|
-
0.1.
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1
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+
0.1.1
|
data/lib/rnewick.rb
CHANGED
@@ -1,4 +1,12 @@
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|
1
1
|
#!/usr/bin/env ruby
|
2
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+
def binary_available(name)
|
3
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+
available = false
|
4
|
+
ENV['PATH'].split(':').each do |folder|
|
5
|
+
available = true if File.exists?(File.join folder, name)
|
6
|
+
end
|
7
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+
available
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8
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+
end
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9
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+
|
2
10
|
class NewickString
|
3
11
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attr_reader :str
|
4
12
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def initialize(str)
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@@ -63,14 +71,15 @@ class NewickFile
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|
63
71
|
end
|
64
72
|
end
|
65
73
|
def remove_taxa(taxa, pruned_tree, verbose = false)
|
66
|
-
|
67
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-
|
74
|
+
# assume nw_prune and nw_reroot are in the PATH
|
75
|
+
nw_pruner = "nw_prune"
|
76
|
+
nw_unrooter = "nw_reroot"
|
68
77
|
[nw_pruner, nw_unrooter].each do |nw_util|
|
69
|
-
raise "#{nw_util} from newick utilities not available" unless
|
78
|
+
raise "#{nw_util} from newick utilities not available" unless binary_available(nw_util)
|
70
79
|
end
|
71
|
-
# prune a list of taxa and unroot resulting tree with these nice and fast newick utilities
|
80
|
+
# prune a list of taxa and unroot resulting tree(s) with these nice and fast newick utilities
|
72
81
|
system "#{nw_pruner} #{@filename} #{taxa.join ' '} | #{nw_unrooter} -d - > #{pruned_tree}"
|
73
|
-
puts "removed #{taxa.join ','} and saved in #{pruned_tree}
|
82
|
+
puts "removed #{taxa.join ','} and saved in #{pruned_tree}" if verbose
|
74
83
|
end
|
75
84
|
end
|
76
85
|
|
data/rnewick.gemspec
ADDED
@@ -0,0 +1,66 @@
|
|
1
|
+
# Generated by jeweler
|
2
|
+
# DO NOT EDIT THIS FILE DIRECTLY
|
3
|
+
# Instead, edit Jeweler::Tasks in Rakefile, and run 'rake gemspec'
|
4
|
+
# -*- encoding: utf-8 -*-
|
5
|
+
|
6
|
+
Gem::Specification.new do |s|
|
7
|
+
s.name = %q{rnewick}
|
8
|
+
s.version = "0.1.1"
|
9
|
+
|
10
|
+
s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
|
11
|
+
s.authors = [%q{Fernando Izquierdo-Carrasco}]
|
12
|
+
s.date = %q{2012-04-11}
|
13
|
+
s.description = %q{newick utilities}
|
14
|
+
s.email = %q{fer.izquierdo@gmail.com}
|
15
|
+
s.extra_rdoc_files = [
|
16
|
+
"LICENSE.txt",
|
17
|
+
"README.rdoc"
|
18
|
+
]
|
19
|
+
s.files = [
|
20
|
+
".document",
|
21
|
+
"Gemfile",
|
22
|
+
"Gemfile.lock",
|
23
|
+
"LICENSE.txt",
|
24
|
+
"README.rdoc",
|
25
|
+
"Rakefile",
|
26
|
+
"VERSION",
|
27
|
+
"lib/rnewick.rb",
|
28
|
+
"rnewick.gemspec",
|
29
|
+
"test/helper.rb",
|
30
|
+
"test/test_rnewick.rb",
|
31
|
+
"test/testdata/20",
|
32
|
+
"test/testdata/20start.nw",
|
33
|
+
"test/testdata/20start.nw.pruned_to.9",
|
34
|
+
"test/testdata/9"
|
35
|
+
]
|
36
|
+
s.homepage = %q{http://github.com/fizquierdo/rnewick}
|
37
|
+
s.licenses = [%q{MIT}]
|
38
|
+
s.require_paths = [%q{lib}]
|
39
|
+
s.rubygems_version = %q{1.8.6}
|
40
|
+
s.summary = %q{newick utilities}
|
41
|
+
|
42
|
+
if s.respond_to? :specification_version then
|
43
|
+
s.specification_version = 3
|
44
|
+
|
45
|
+
if Gem::Version.new(Gem::VERSION) >= Gem::Version.new('1.2.0') then
|
46
|
+
s.add_development_dependency(%q<shoulda>, [">= 0"])
|
47
|
+
s.add_development_dependency(%q<rdoc>, ["~> 3.12"])
|
48
|
+
s.add_development_dependency(%q<bundler>, ["~> 1.0.0"])
|
49
|
+
s.add_development_dependency(%q<jeweler>, ["~> 1.8.3"])
|
50
|
+
s.add_development_dependency(%q<rcov>, [">= 0"])
|
51
|
+
else
|
52
|
+
s.add_dependency(%q<shoulda>, [">= 0"])
|
53
|
+
s.add_dependency(%q<rdoc>, ["~> 3.12"])
|
54
|
+
s.add_dependency(%q<bundler>, ["~> 1.0.0"])
|
55
|
+
s.add_dependency(%q<jeweler>, ["~> 1.8.3"])
|
56
|
+
s.add_dependency(%q<rcov>, [">= 0"])
|
57
|
+
end
|
58
|
+
else
|
59
|
+
s.add_dependency(%q<shoulda>, [">= 0"])
|
60
|
+
s.add_dependency(%q<rdoc>, ["~> 3.12"])
|
61
|
+
s.add_dependency(%q<bundler>, ["~> 1.0.0"])
|
62
|
+
s.add_dependency(%q<jeweler>, ["~> 1.8.3"])
|
63
|
+
s.add_dependency(%q<rcov>, [">= 0"])
|
64
|
+
end
|
65
|
+
end
|
66
|
+
|
data/test/test_rnewick.rb
CHANGED
@@ -1,7 +1,22 @@
|
|
1
1
|
require 'helper'
|
2
2
|
|
3
3
|
class TestRnewick < Test::Unit::TestCase
|
4
|
-
should "
|
5
|
-
|
4
|
+
should "find binary files for pruning" do
|
5
|
+
assert binary_available("nw_prune")
|
6
|
+
assert binary_available("nw_reroot")
|
7
|
+
end
|
8
|
+
should "be able to prune a newick string corretly" do
|
9
|
+
# prepare data
|
10
|
+
newick_file = NewickFile.new("test/testdata/20start.nw")
|
11
|
+
outliers = ["Seq10", "Seq11", "Seq12", "Seq13", "Seq14", "Seq15", "Seq16", "Seq17", "Seq18", "Seq19", "Seq20"]
|
12
|
+
expected_pruned_newick_file = NewickFile.new("test/testdata/20start.nw.pruned_to.9")
|
13
|
+
# prune
|
14
|
+
pruned = "test/testdata/tmp_pruned.nw"
|
15
|
+
newick_file.remove_taxa(outliers, pruned)
|
16
|
+
# check
|
17
|
+
pruned_file = NewickFile.new(pruned)
|
18
|
+
assert_equal pruned_file.newickStrings.first.str, expected_pruned_newick_file.newickStrings.first.str
|
19
|
+
# clean
|
20
|
+
File.delete(pruned)
|
6
21
|
end
|
7
22
|
end
|
data/test/testdata/20
ADDED
@@ -0,0 +1,21 @@
|
|
1
|
+
20 1200
|
2
|
+
Seq1 ATGACCAACATTCGAAAATCACACCCCCTTATCAAAATCGTTAATCACTCATTCATCGATTTACCCACCCCACCTAACATTTCAGCATGATGAAACTTCGGCTCCCTACTAGGAGTCTGCCTAGTCCTACAGATCCTAACCGGCCTTTTCCTAGCCATACACTACACATCAGACACAATAACCGCCTTTTCATCAGTTACTCACATCTGCCGCGACGTCAACTACGGCTGAATTATTCGATACATGCACGCCAACGGAGCCTCTATATTCTTTATCTGCCTATACATGCATGTAGGACGAGGAATATACTACGGCTCCTACACCTTCTCAGAAACATGAAATATTGGAATCATACTACTACTCACAGTCATAGCCACAGCCTTCATAGGATATGTCTTACCATGAGGTCAAATATCTTTCTGAGGAGCAACTGTAATTACCAACCTCCTATCAGCAATTCCTTACATCGGCACTAATCTAGTAGAGTGAATTTGAGGAGGTTTCTCGGTAGACAAAGCTACCCTGACACGATTCTTTGCCTTCCACTTTATCCTTCCATTCATCATCTCAGCCCTAGCAGCAGTACACCTCTTATTTCTCCACGAGACAGGATCCAATAACCCCTCAGGAATCACATCCGACTCAGACAAAATTCCATTCCACCCATACTACATAATCAAGGACATTCTAGGTCTCCTAATACTAATTTTAATACTCACACTACTCGTCCTCTTCTCACCAGACCTGTTAGGAGATCCAGACAACTACATCCCCGCCAACCCCCTAAACACTCCTCCCCATATTAAACCCGAATGATATTTTTTATTCGCATACGCAATCCTCCGATCCATCCCTAACAAATTAGGAGGAGTCCTAGCCCTAATATTCTCCATCCTAATCCTAGCAATCATTCCAATTTTCCACACCTCCAAACAACGAGGAATAATATTTCGACCACTAAGCCAATGCTTATTCTGACTCCTAGTAGCAGACCTCCTCACCCTAACATGAATTGGCGGCCAACCTGTAGAACACCCCTTTATTACCATCGGCCAACTAGCCTCCATTCTATACTTCTCAACCCTCCTAGTTCTAATACCTATTTCAGGCATCATCGAAAACCGCCTCCTA------AAATGA------------------------------------------------------AGA
|
3
|
+
Seq2 ATGAAAATTATACGAAAAACACACCCACTCCTAAAAATCATTAACCATGCATTCGTCGACCTCCCTGCACCCTCCAACATCTCATCATGATGAAACTTCGGCTCTCTATTAGGAGTATGCCTAATAATCCAAATCCTCACAGGACTGTTTCTAGCAATACACTACACCTCAGACACTATAACAGCATTCTCATCCGTAACCCACATCTGCCGAGACGTAAATTACGGTTGACTGATTCGATACCTCCATGCAAACGGAGCCTCCATGTTCTTCATGTGCTTATTCATACACGTAGGACGAGGCATCTACTATGGGTCCTACACCTTTATAGAGACATGAAACCTTGGTATTATTCTACTGTTTGCCGTAATAGCAACTGCATTTATAGGATATGTCCTCCCATGGGGGCAAATATCCTTCTGAGGGGCCACAGTCATCACAAACCTACTTTCAGCCATCCCCTACATCGGTACTAACCTAGTAGAATGAATCTGAGGCGGATTTTCAGTAGACAAAGCCACCCTTACACGCTTCTTCGCATTCCACTTTATCCTCCCCTTTATTATTGCAGCTCTGGCCATGGTACACCTACTTTTTCTCCACGAAACAGGCTCTAATAACCCCACAGGAATGAACTCCGATGCAGACAAAATCCCCTTCCACCCCTACTACACAATCAAAGACCTCTTAGGTGTATTCCTCATACTGTCAGTCCTCCTCCTATTAGTACTTTTCTCCCCAGACCTATTAGGAGACCCCGACAACTATACACCAGCTAACCCCCTAAACACCCCTCCTCACATTAAGCCAGAATGATACTTTCTATTTGCATATGCTATCCTACGCTCTATCCCCAACAAACTAGGAGGCGTATTAGCCCTAGTACTATCCATCCTAATCCTAGCTTTTATACCTCTCACCTACACCTTAAAACAACGAATCTTAATATTCCGCCCAATCAGCCAGACCATATTCTGAATCCTAGCAGCCAACCTACTTATCCTAACCTGAATCGGAGGACAACCCGTAGAACACCCCTTCATCATTATTGGCCAACTAGCTTCAATCAGCTACTTCTCCATCATTTTAATTCTAATACCAATCTCAGGACTAATCGAAAACAAAATACTAAAACTA------AAC---------------------------------------------------T--
|
4
|
+
Seq3 ATGAAAATTATACGAAAAACACACCCACTCCTAAAAATCATTAATCACGCATTCGTCGACCTCCCTGCACCCTCTAACATCTCATCATGATGAAACTTCGGCTCCCTATTAGGAGTATGCCTAATAATCCAAATCCTCACAGGACTATTTCTAGCAATACACTACACCTCCGACACTACAACAGCATTCTCATCCGTAACCCACATCTGCCGAGACGTAAACTACGGCTGATTAATTCGATACCTCCATGCAAATGGGGCTTCCATATTCTTCATGTGCTTATTCATACACGTAGGACGAGGCATTTATTATGGGTCTTACACCTTCACAGAGACATGAAACCTTGGTATCATTCTACTGTTTGCCGTAATAGCAACTGCATTTATAGGATATGTCCTTCCATGGGGACAAATATCCTTCTGAGGGGCCACAGTCATTACAAACCTACTCTCAGCCATCCCCTACATCGGCACTGACCTGGTAGAGTGAATCTGAGGCGGGTTTTCAGTAGACAAAGCCACCCTTACACGCTTCTTCGCATTCCACTTTATTCTCCCCTTTATCATTGCAGCCCTAGCCATAGTACACCTACTCTTTCTACACGAAACAGGCTCTAATAACCCCACAGGAGTGAACTCCGATGCAGACAAAATCCCCTTCCACCCCTACTACACAATCAAAGACCTTTTAGGTGTATTCCTCATACTATTAGTCCTCCTCCTATTAGTACTATTCTCCCCAGACCTACTAGGAGACCCCGACAACTACACACCAGCTAACCCCCTGAACACCCCTCCTCACATTAAACCAGAATGATATTTCCTATTCGCATATGCTATTCTACGCTCCATCCCCAACAAACTCGGAGGCGTACTAGCTCTAGTAATATCTATCCTAATCCTAATTTTCATACCCCTCACCCACACCTCAAAACAACGAAGCTTAATATTCCGCCCAATCAGTCAGGCTATATTCTGAATCCTAACAGCTAACCTACTTATCCTAACCTGAATCGGAGGACAACCCGTAGAACACCCCTTTATCATTATCGGCCAACTAGCTTCAATCAGCTATTTCTCCATCATTTTAATCCTAATACCAATCTCAGGACTAATTGAAAACAAAATACTAAAATTA------AAC---------------------------------------------------T--
|
5
|
+
Seq4 ATGAAAATTATACGAAAAACACACCCACTCATAAAAATTATCAACCACGCATTCATCGATCTCCCTGCACCCTCCAACATCTCATCATGATGAAACTTTGGTTCTCTATTAGGAGTATGCCTAATAGTCCAAATCCTCACAGGCCTATTCTTAGCAATACACTACACCTCCGACACTATAACAGCATTCACATCCGTAACCCACATCTGCCGAGACGTAAACTACGGCTGATTAATTCGATATCTCCATGCAAACGGAGCCTCCATATTCTTCGTATGCTTGTTTATACACGTAGGACGAGGAATCTACTATGGATCTTACACCTTTACAGAAACATGAAATCTTGGTGTTATTCTACTATTTGCCGTAATAGCAACTGCATTTATAGGATATGTACTTCCATGAGGACAAATATCCTTCTGAGGAGCCACAGTCATTACAAACCTTCTCTCAGCTATTCCCTACATCGGTACTAACCTAGTAGAATGAATTTGAGGGGGGTTCTCAGTAGACAAAGCCACCCTCACACGCTTCTTCGCATTCCACTTTATCCTTCCATTTATCATTGCAGCCCTAGCCATAGTACACCTACTATTCCTCCACGAAACAGGCTCTAATAACCCCACAGGAATGAACTCTGACGCAGATAAAATTCCCTTTCACCCCTACTATACAATCAAAGACCTCTTAGGCGTATTTCTCATACTACTAGTTCTCCTACTATTAGTACTATTTTCCCCAGACTTATTAGGAGACCCCGACAACTACACACCAGCCAACCCCCTAAATACCCCTCCCCACATTAAACCAGAGTGATATTTTCTATT-GCATACGCTATCCTACGCTCTATCCCCAATAAACTTGGAGGCGTACTAGCCCTAGTACTATCTATCCTAATCCTAATTCTCATACCCTTAATCCATACCTCAAAACAACGAAGCTTAATATTCCGTCCAATTAGCCAAATCATATTCTGAATCCTAACAGCTAACCTACTCATCCTGACCTGAATCGGAGGACAACCCGTAGAACATCCCTTTATCATTATCGGCCAACTAGCTTCAATCAGCTATTTCTCCATTATTCTAATCCTAATACCGATCTCAGGACTAATTGAAAATAAAATACTAAAATTA------AAC---------------------------------------------------T--
|
6
|
+
Seq5 ATGAAAAACATACGAAAAACGCAACCACTCCTAAAAATTATTAACCACGAATTCATTGA-TTTCCTGAAACATCCAA-ATCTCATCATGATGAAACTTTGGCTCTCTACTAGGCATCTGCCTAGTAATCCAGATCCTAACAGGCTTATTCCTAGCAATACACTATACCTCCGACACCACCACAGCATTTTCATCTGTAACCCACATTTGCCGAGACGTAAACTACGGCTGACTGATTCGTTACCTCCATGCAAATGGAGCCTCCATATTCTTCATGTGCCTGTTCATACATGTAGGACGGGGAATCTACTACGGATCTTATACCTTCATAGAAACCTGAAATCTCGGCATTATTCTACTGTTCGCCGTAATAGCAACTGCATTTATAGGATATGTACTCCCATGAGGACAGATATCCTTCTGAGGGGCCACAGTCATTACAAATCTACTCTCAGCTATCCCCTACATCGGAACTAATCTAGTAGAGTGAATTTGAGGAGGCTTCTCAGTAGACAAAGCCACTCTAACACGCTTTTTCGCATTCCACTTTATCCTACCCTTTATCATTGCAGCCCTAGCTATAGTCCACCTACTATTCCTCCACGAAACAGGATCTAACAA-CCCACCGGGATAAACTCTGACGCAGATAAAATCCCCTTTCATCCCTACTACACAATTAAAGATCTCCTAGGAGTATTCCTAATATTAACAGCCCTACTCTTATTAGTCCTCTTCTCCCCAGACTTATTAGGAGACCCCGACAACTACACACCAGCCAACCCCCTAAACACCCCTCCCCACATCAAACCAGAATGATATTTCCTATTTGCATACGCCATCCTACGCTCTATTCCTAACAAACTCGGAGGAGTACTAGCCCTAGTGCTATCAATCCTAATCCTAATTTTTTTACCCTTCATCCACACTTCCAAACAACGAAGCCTAATATTCCGCCCAATCAGCCAAACCATATTTTGAATCCTAGCAGCAAATCTTCTTGTCCTAACCTGAATCGGAGGACAACCTGTAGAATACCCCTTCACCATTATTGGCCAACTAGCCTCAATCAGTTATTTCTCTATTATCCTAATCCTACTACCAATCTCAGGTCTAATC-AAAATAAAATAATAAAAATA------AAC---------------------------------------------------T--
|
7
|
+
Seq6 ATGAAAATTATACGAAAAACACACCCACTCCTAAAAATCATTAATCACGCATTCGTCGACCTCCCTGCACCCTCTAACATCTCATCATGATGAAACTTCGGCTCCCTATTAGGAGTATGCCTAATAATCCAAATCCTCACAGGACTATTTCTAGCAATACACTACACCTCCGACACTACAACAGCATTCTCATCCGTAACCCACATCTGCCGAGACGTAAACTACGGCTGATTAATTCGATACCTCCATGCAAATGGGGCTTCCATATTCTTCATGTGCTTATTCATACACGTAGGACGAGGCATTTATTATGGGTCTTACACCTTCACAGAGACATGAAACCTTGGTATCATTCTACTGTTTGCCGTAATAGCAACTGCATTTATAGGATATGTCCTTCCATGGGGACAAATATCCTTCTGAGGGGCCACAGTCATTACAAACCTACTCTCAGCCATCCCCTACATCGGCACTGACCTGGTAGAGTGAATCTGAGGCGGGTTTTCAGTAGACAAAGCCACCCTTACACGCTTCTTCGCATTCCACTTTATTCTCCCCTTTATCATTGCAGCCCTAGCCATAGTACACCTACTCTTTCTACACGAAACAGGCTCTAATAACCCCACAGGAGTGAACTCCGATGCAGACAAAATCCCCTTCCACCCCTACTACACAATCAAAGACCTTTTAGGTGTATTCCTCATACTATTAGCCCTCCTCCTATTAGTACTATTCTCCCCAGACCTACTAGGAGACCCCGACAACTACACACCAGCTAACCCCCTGAACACCCCTCCTCACATTAAACCAGAATGATATTTCCTATTCGCATATGCTATTCTACGCTCCATCCCCAACAAACTCGGAGGCGTACTAGCTCTAGTAATATCTATCCTAATCCTAATTTTCATACCCCTCACCCACACCTCAAAACAACGAAGCTTAATATTCCGCCCAATCAGTCAGGCTATATTCTGAATCCTAACAGCTAACCTACTTATCCTAACCTGAATCGGAGGACAACCCGTAGAACACCCCTTTATCATTATCGGCCAACTAGCTTCAATCAGCTATTTCTCCATCATTTTAATCCTAATACCAATCTCAGGACTAATTGAAAACAAAATACTAAAATTA------AAC---------------------------------------------------T--
|
8
|
+
Seq7 ATGAAAATTATACGAAAAACACACCCACTCCTAAAAATCATTAATCACGCATTCGTCGACCTCCCTGCACCCTCTAATATCTCATCATGATGAAACTTCGGCTCCCTATTAGGAGTATGCCTAGTAATCCAAATCCTCACAGGATTATTTCTAGCAATACACTACACCTCCGACACTATAACAGCATTCTCATCCGTAACCCACATCTGCCGAGACGTAAACTACGGCTGATTAATTCGATACCTCCATGCAAATGGGGCTTCCATATTCTTCGTGTGCTTATTCATACACGTAGGACGAGGCATTTATTATGGATCTTACACCTTCACAGAGACATGAAACCTTGGTATCATTCTACTGTTTGCCGTAATAGCAACTGCATTTATAGGGTATGTCCTTCCATGGGGACAAATATCCTTCTGAGGGGCCACAGTCATTACAAACCTACTCTCAGCCATCCCCTACATCGGCACTGACCTGGTAGAGTGAATCTGAGGCGGGTTTTCAGTAGACAAAGCCACCCTTACACGCTTCTTCGCATTCCACTTTATTCTCCCCTTTATCATTGCAGCCCTAGCCATAGTACACCTACTCTTTCTACACGAAACAGGCTCTAATAACCCCACAGGAGTAAACTCCGATGCAGACAAAATCCCCTTCCACCCCTACTACACAATCAAAGACCTTTTAGGTGTTTTCCTCATACTATTAGTCCTCCTCCTACTAGTACTATTCTCCCCAGATCTACTAGGAGACCCCGACAACTACACACCAGCTAACCCCCTGAACACCCCTCCTCACATTAAACCAGAATGGTATTTCCTATTCGCATATGCTATTCTACGCTCCATCCCCAACAAACTCGGAGGTGTACTAGCTCTAGTAATATCTATCCTAATCCTAATTTTCATACCCCTCACCCACACCTCAAAACAACGAAGCTTAATATTCCGCCCAATCAGTCAGGCTATATTCTGAATCCTAACAGCTAACCTACTTATCCTAACCTGAATCGGAGGACAACCCGTAGAACACCCCTTTATCATTATCGGCCAACTAGCTTCAATCAGCTACTTCTCCATTATTTTAATCCTAATACCAATCTCAGGACTAATTGAAAACAAAATACTAAAATTA------AAC---------------------------------------------------T--
|
9
|
+
Seq8 ATGAAAAACATACGAAAATCACACCCACTACTAAAAATCATTAATCTCGCATTTATTGACCTACCCGCACCATCCAATATCTCATCATGATGAAACTTTGGGTCCCTTCTAGGAGTCTGTCTAGTAGTACAAATTATCACAGGACTATTTCTAGCAATACACTACACCTCTGATACCACAACAGCATTTTCATCTGTAACTCATATCTGCCGAGATGTAAACTACGGTTGATTGATTCGATATCTTCATGCAAACGGAGCCTCAATATTCTTCATGTGCCTATTTATACACGTAGGACGAGGAATCTACTACGGATCCTACACCTTTACAGAAACCTGAAATATTGGCATTATTCTACTGTTCGCCGTAATAGCAACTGCATTTATAGGATATGTGCTTCCCTGAGGACAAATATCCTTCTGAGGAGCCACAGTTATTACTAACCTTCTCTCAGCAGTTCCCTACATCGGTACTAATTTAGTAGAATGAATCTGAGGGGGGTTCTCAGTAGACAAAGCCACTCTTACACGCTTCTTCGCATTCCATTTTATCCTCCCATTCATCATTGCAGCCCTAGCTATAGTCCACCTACTTTTTCTCCACGAAACTGGATCCAATAACCCCACCGGAATCAACTCTGATGCAGACAAAATTCCATTCCATCCGTACTACACTATAAAAGACTTCCTAGGGGCCCTACTCATGTTAGTAGTTCTACTCCTACTTGTTTTATTTTCCCCAGATATTTTAGGCGACCCAGATAATTATACACCAGCTAACCCCCTAAACACACCTCCTCACATCAAACCAGAGTGATATTTCCTATTCGCCTACGCTATCCTACGTTCTATCCCCAATAAACTAGGAGGAGTGTTAGCTTTAGTACTATCCATCCTTGTCCTAGCCTTGCTACCTCTCATGCACACCTCAAAACAACGAAGCCTTATGTTCCGCCCAATTAGCCAAATCCTATTTTGAATACTAACAGCTAATCTTCTAATTCTAACCTGAATTGGGGGACAACCAGTAGAACACCCCTTCATTATCATTGGACAAGTAGCTTCAATCAGCTACTTCTCTATTATTTTAATCCTAATACCAATCTCAGGACTAATCGAAAACAAAATACTAAAACTT------------------------------------------------------------T--
|
10
|
+
Seq9 ATGACAAACATCCGAAAAACACACCCCCTACTTAAAATTATTAATAACGCATTCATTGACCTACCAGCCCCATCCAACATTTCATCATGATGAAACTTCGGGTCTTTACTAGGAATCTGCTTAATCATCCAAATCATCACAGGACTTTTCCTAGCCATACATTACACCTCAGACACCTCAACAGCATTCTCATCTGTTACCCATATTTGCCGAGATGTAAACTACGGTTGACTTATTCGCTATCTTCATGCAAACGGAGCCTCCATATTCTTTGTCTGCTTATTTATACATGTTGGACGAGGAATCTATTACGGATCTTATACCTACATAGAAACATGAAATATCGGCATCATTCTACTGTTCGCCGTAATAGCAACTGCATTTATAGGATATGTACTTCCATGAGGACAAATATCTTTTTGAGGGGCCACAGTCATTACCAACCTACTATCAGCTATCCCTTACATTGGCACTAACTTAGTAGAATGAATTTGAGGTGGATTTTCCGTAGATAAAGCCACCCTAACACGATTCTTCGCCTTCCACTTTATTCTCCCATTTATCATCGCTGCCCTAGCCATAGTTCATCTTCTTTTCCTTCACGAAACAGGATCTAATAATCCTACCGGAATTAACTCCGACACTGACAAAATTCCCTTTCATCCTTACTACACAACAAAAGACCTATTAGGAGCTCTAATACTCATTATAGTCCTACTAGCACTAGTATTATTTTCACCTGACCTCCTAGGAGACCCAGATAACTACACACCAGCTAACCCATTAAATACACCTCCCCATATCAAACCAGAATGATATTTCTTATTCGCCTACGCAATCCTCCGATCCATCCCTAACAAACTAGGAGGAGTCTTAGCCCTGGTCTTATCAATCCTAGTCCTAGCAATCCTCCCACTAATCCACACCTCAAAACAACGAAGCCTCATATTCCGCCCAATTAGCCAAACCCTATTCTGAATCCTAGTGGCCAACCTATTAATCCTTACCTGAATCGGAGGACAACCCGTAGAACACCCCTTCATCATCATCGGCCAACTAGCTTCCATCAGCTACTTCACAATCATCCTAACTCTCATTCCTATCTCAGGCCTAATCGAAAATAAAATAATG------AAATGAAAC---------------------------------------------------T--
|
11
|
+
Seq10 ATGACTAACATTCGAAAAACTCACCCACTGATAAAAATTGTAAACAACGCATTTATCGACCTCCCAGCCCCATCAAACATTTCATCATGATGAAACTTTGGCTCCCTACTAGGCATCTGCCTAATCCTGCAAATCTTAACAGGCCTATTCCTAGCGATACACTACACATCCGACACAACAACAGCATTCTCCTCTGTCGCCCACATTTGCCGAGACGTCAATTATGGCTGAATCATCCGATACATACACGCAAACGGAGCATCAATATTTTTTATCTGCCTATTCATACACGTAGGACGAGGCCTCTACTATGGGTCATATACCTTCCTAGAAACATGAAACGTCGGAGTAATCCTCCTATTTACAACAATAGCCACAGCATTTATAGGCTATGTCCTGCCATGAGGACAAATATCATTCTGAGGAGCAACAGTCATCACCAACCTTCTCTCAGCAATCCCATATATCGGCACAGACCTGGTCGAATGAATCTGAGGAGGATTCTCCGTAGACAAAGCAACCCTTACCCGATTTTTCGCCTTCCACTTTATTCTCCCCTTTATTATCGCTGCCCTTGCCATAGTCCATCTACTCTTTCTCCACGAAACAGGCTCCAACAACCCTACAGGAATCTCCTCAGACACAGACAAAATCCCATTCCACCCTTACTATACCATTAAAGACATCTTAGGCGCCCTACTACTAATTCTAGTCCTCATACTACTAGTATTATTCACACCCGACCTACTTGGAGACCCAGACAATTATACCCCAGCAAATCCACTTAGCACGCCCCCTCACATCAAACCTGAATGATATTTCCTATTTGCATACGCAATTCTACGATCAATCCCCAACAAACTAGGAGGAGTTCTAGCCTTAGTCCTCTCAATCCTAATCCTGGTACTCGTACCCGCACTCCACACATCCAAGCAACGAAGCATAATATTTCGACCAATCAGCCAATGCATTTTCTGAATCTTAGTAGCAGACCTATTAACACTCACATGAATCGGAGGACAACCAGTTGAACACCCATACATTATTATTGGACAATTAGCATCTATCACATACTTCCTACTTATCCTAGTACTTATACCAGTAGCCAGTACTATTGAAAATAACCTTCTA------AAATGA------------------------------------------------------AGA
|
12
|
+
Seq11 ATGACAAACATCCGAAAAATTCATCCCCTAATAAAAACCATTAACCACTCCTTCATTGATCTCCCCGCACCATCCAACATCTCATCATGATGAAACTTCGGCTCTCTACTAGGAATTTGCTTAATAGTACAAATCATCACAGGTCTATTCTTAGCCATACATTATACATCAGACACAACAACAGCATTTTCATCAGTAACCCATATCTGCCGAGACGTAAATTATGGATGACTAATCCGATATATACATGCAAACGGAGCCTCAATGTTCTTCATCTGCTTATTCCTTCATGTAGGACGAGGAATATACTATGGATCTTATACATTCCTAGAAACATGAAACATCGGAGTGATTTTATTATTTACAGTCATAGCCACTGCATTCATAGGATATGTCCTTCCATGAGGACAAATATCATTCTGAGGGGCCACAGTAATTACAAACTTACTTTCAGCCATCCCATATATTGGCACAATCCTAGTAGAATGAATCTGAGGCGGATTCTCAGTAGACAAGGCTACTTTAACACGCTTTTTCGCATTTCACTTCATCTTACCATTCATTATTGCCGCCTTAGCAATCGTTCACCTACTATTTCTACATGAAACAGGCTCAAATAATCCAACAGGACTTAACTCAGATGCAGACAAAATCCCCTTCCACCCTTACTATACCATCAAAGATATTCTAGGAATCATAATTATACTTCTACTATTAATAATTTTAGTATTATTCTTTCCCGACTTACTAGGAGACCCTGACAATTATATGCCAGCTAACCCACTCAACACCCCTCCACACATCAAACCAGAATGATACTTCCTATTTGCTTACGCCATCCTACGCTCCATCCCTAATAAACTAGGAGGTGTACTTGCCCTAATTCTATCTATCCTTATTCTAGCCTTCCTACCCTTCCTTCACACCTCAAAACAACGCAGCCTAATTTTCCGCCCAATCACCCAAACCCTATACTGACTTCTAGTAGCAAATCTACTCATCCTAACCTGAATCGGAGGGCAACCAGTAGAACACCCATTCATCATTATTGGACAACTAGCCTCCATTAGTTACTTCTCCATTATCCTTATTCTAATACCAATCTCAGGTATAATCGAAAATAAAATACTA------AAATGAAAC------------------------------------------------------
|
13
|
+
Seq12 ATGACAAACATCCGAAAAACTCATCCCTTAATAAAAATTATTAATCATTCATTCATTGATCTTCCCGCACCATCCAACATCTCATCATGATGAAATTTCGGCTCCCTATTAGGAATCTGCCTAACAGTACAAATTGCCACAGGCCTATTTCTAGCCATACATTATACATCAGATACAACAACAGCATTCTCATCAGTAGCCCACATTTGCCGAGACGTAAATTACGGATGATTTATCCGATATATACATGCAAACGGAGCTTCCATATTTTTCATATGCCTATTCCTCCACGTAGGACGAGGAATATATTACGGATCCTACACATTTCTAGAAACATGAAATATCGGAGTAATTCTTCTATTTGCAGTTATAGCCACTGCATTCATAGGATATGTCCTTCCATGAGGACAAATATCATTTTGAGGAGCTACAGTAATTACAAATCTACTCTCAGCCATCCCATACATTGGCAGTACTTTAGTAGAGTGAATCTGAGGTGGATTCTCAGTAGACAAAGCTACTTTAACACGCTTTTTCGCATTTCACTTTATCTTACCATTCATCATTGCAGCCCTTGCAATCGTTCATTTATTATTCTTACATGAAACAGGCTCAAATAACCCAATAGGACTAAACTCAGACGCAGACAAAATTCCATTTCACCCCTACTATACTACCAAAGATATTCTAGGAATTTTAATTATACTAACACTACTAATAATCCTAGTATTATTCTTTCCAGACCTACTAGGAGACCCCGACAACTATATACCAGCCAATCCACTCAACACCCCTCCTCATATTAAACCAGAATGATATTTTCTATTTGCCTATGCCATCCTTCGTTCCATCCCTAACAAACTAGGAGGTGTAGTGGCCTTAATCCTATCTATCCTTATCCTAGCCCTCCTACCACTCCTACATACCTCAAAACAACGCAGCCTAATATTCCGCCCAATTACCCAAACTCTTTACTGAATACTAGTAGCAAACTTAATTATCTTAACCTGAATCGGAGGTCAACCCGTAGAACACCCATTCATCATTATTGGCCAACTAGCCTCCATCAGCTACTTCTCTATTATTCTCATTCTAATACCAATCTCAGGCATCATTGAAAACAAAATATTA------AAATGAAAC------------------------------------------------------
|
14
|
+
Seq13 ATGACAAACATCCGAAAAACCCATCCCCTATTCAAAATTATTAATCACTCATTCATTGACCTTCCAGCCCCATCCAACATCTCATCATGATGAAACTTCGGTTCACTTCTTGGAATCTGCTTAATAGTCCAAATTTTAACTGGCTTATTCTTAGCTATACACTACACCTCCGACACACTAACAGCATTCTCATCAGTAACCCACATCTGTCGAGACGTTAATTACGGCTGATTGGTACGATATATACACGCAAATGGAGCCTCAATATTCTTCATCTGCCTATTTATACACGTAGGACGAGGTATATACTACGGATCATACACATTTTTAGAAACATGAAACATCGGGGTAATTCTTTTATTTACAGTAATAGCTACCGCATTTATAGGTTATGTACTCCCATGAGGACAAATATCATTTTGAGGGGCAACAGTAATTACAAACTTACTATCTGCCATTCCATACATTGGAACTACTTTAGTAGAATGAATCTGAGGAGGATTCTCAGTAGATAAAGCCACCCTAACCCGATTCTTCGCATTTCACTTCATTTTACCATTCATCATTACAGCCCTCGTAATTGTTCACCTCTTATTCCTGCACGAAACAGGCTCCAACAACCCAACAGGACTAAATTCAGACGCAGACAAAATTCCATTTCATCCATATTATACCATCAAAGACATTCTAGGGATATTAATTATACTAGTACTCCTAATAATTCTAGTCTTATTCTTTCCAGACTCATTAGGAGACCCAGACAACTATATACCAGCCAACCCACTTAACACCCCCCCACATATCAAACCAGAATGATACTTCCTATTTGCCTACGCTATTCTACGGTCCATCCCTAATAAACTAGGAGGGGTACTAGCTCTAATTATATCCATTCTAATCCTAGTTTTTTTACCTTACCTTCATACCTCAAAACAACGCAGTCTAATATTCCGGCCAATTACTCAAATATTATACTGACTATTAGTAGCAAACTTACTAATTCTAACCTGAATCGGAGGTCAACCTGTAGAACACCCATTTATTATCATTGGTCAACTAGCCTCTATCAGCTATTTCTCCATTATTCTAATCCTCATACCAATTGCAGGCATCATCGAAGACAAAATACTA------AAATGAAAC------------------------------------------------------
|
15
|
+
Seq14 ATGATCAACATCCGAAAAACTCATCCATTAGTTAAAATTATCAACAACTCATTCATTGACCTTCCAACACCATCAAACATTTCAACATGATGGAACTTTGGGTCCCTGTTAGGAGTGTGTCTGATCTTGCAAATCTTAACAGGCTTATTTCTAGCCATACACTATACATCAGATACAGCTACAGCCTTTTCATCAGTCGCACACATTTGTCGAGACGTCAACTATGGGTGATTTATCCGATATATACATGCCAATGGGGCCTCTATATTTTTTATCTGCCTATTTATACACGTAGGGCGAGGCTTATACTATGGATCATACCTATTTCCAGAGACATGGAATATCGGAATTATTCTCCTACTTACAATTATAGCCACCGCATTTATAGGATACGTCCTACCCTGAGGCCAAATGTCCTTCTGAGGAGCGACTGTCATCACCAACCTACTATCGGCCATTCCCTACATCGGAACGAACCTAGTAGAATGAATCTGAGGGGGCTTTTCCGTAGATAAGGCGACCCTAACACGATTCTTTGCTTTCCACTTTATCCTTCCATTTATCATCTCAGCACTAGCAATAGTCCATCTATTATTCCTTCACGAAACAGGATCTAATAACCCCTCCGGAATTCCATCTGACCCAGACAAAATCCCATTTTACCCCTATCATACAATTAAAGACATCCTAGGCGTCCTATTTCTTGTCCTCGCCTTAATAACCCTGGCTTTATTCTCACCAGACCTGTTAGGAGACCCTGATAACTATACCCCTGCAAATCCACTAAGTACCCCGCCACATATTAAGCCTGAATGGTACTTTCTATTTGCCTACGCTATCCTGCGATCCATTCCTAATAAACTAGGAGGGGTGCTAGCTCTAATCTTCTCTATTCTAATTCTAACTATTATTCCACTATTACATACATCCAAACAACGAAGCATGATATTCCGACCTCTAAGTCAATGCTTATTCTGACTCCTAGTAGCAGACCTACTCACACTAACATGAATTGGAGGACAGCCAGTAGAACACCCCTTCATTATTATTGGGCAATTGGCCTCTATTCTCTACTTTACAATTCTTCTAGTACTTATACCTATCACTAGCATTATTGAGAATAGCCTCTCA------AAATGA------------------------------------------------------AGA
|
16
|
+
Seq15 ATGAAAATTTTACGGAAAAATCACCCGCTACTTAAAATTGTTAATCATTCATTTATTGACCTCCCAACCCCATCTAACATCTCATCTTGATGGAATTTCGGGTCACTACTCGGTGTGTGCCTAGTAATCCAAATTCTGACCGGCCTATTCCTAGCCATACACTACACATCAGACACAACCACAGCATTCTCCTCAGTTGCCCACATTTGCCGAGATGTAAACTACGGATGATTAATTCGCTACCTTCACGCTAACGGAGCCTCCATATTCTTTATCTGCCTTTTCATCCACGTAGGCCGAGGAATCTACTACGGCTCCTATGTCCTCTCAGAAACCTGAAACATCGGTATCATCCTGTTCCTTACAACTATAGCAACAGCATTCGTAGGGTATGTTCTACCGTGGGGACAAATATCCTTCTGAGGAGCTACCGTAATCACAAACCTCCTCTCAGCAATCCCATACATCGGAAGCACCCTTGTTGAATGAATTTGAGGGGGCTTCTCAGTTGATAAAGCCACCCTAACCCGCTTCTTCGCCTTCCATTTTATTCTGCCTTTTATCATCACGGCCTTCGCCTTAGTCCACCTATTATTCCTTCACGAGACAGGATCCAACAACCCATCAGGCTTAAACTCAGACTCCGACAAAATCCCATTCCACCCCTACTACACAATCAAAGATCTCCTGGGCATCTTCCTCCTATTATTAATTCTCATAACTTTAGCCCTATTTTTCCCAGATGTCCTTGGAGACCCAGACAATTTTACCCCAGCAAACCCCCTCAACACTCCAGCACACATCAAGCCAGAATGATATTTCCTATTTGCTTACGCCATCCTTCGGTCTATCCCCAACAAACTTGGAGGTGTGTTAGCCCTTATTCTCTCTATTCTCATTTTAGCAACGTTCCCACTACTAAATACTTCCAAACAACACGGTTTAATTTTCCGACCTATCACACAAACCATTTACTGAACTTTTATCGCCAACCTTCTCGTACTTACATGAATTGGGGGGCAACCCGTTGAATACCCATTCACAACAATTGGACAAATCGCATCAATCACCTACTTCACTATTATTATCATTTTAATGCCAGTCTCTAATACCATCGAGAACAACATCATCAAACTT------------------------------------------------------------TAG
|
17
|
+
Seq16 ATGAAAATTTTACGGAAAAACCACCCGCTACTTAAAATTGTTAATCACTCATTTATTGACCTCCCAACCCCATCCAACATCTCATCTTGATGAAATTTTGGGTCACTACTCGGTGTATGCCTAATAATTCAAATTCTGACTGGCCTATTCCTAGCCATACACTACACATCAGACACAACCACAGCATTCTCTTCAGTTGCCCACATTTGCCGAGACGTGAACTACGGATGATTAATCCGCTACCTCCACGCCAACGGAGCCTCCATATTCTTTATCTGCCTTTTTATCCACGTAGGTCGAGGAATCTACTACGGCTCCTATGTCCTCTCAGAAACCTGAAACATCGGCATCATCCTATTCCTTACAACTATGGCAACAGCATTCGTAGGGTATGTACTACCATGAGGACAAATATCTTTCTGAGGGGCTACTGTAATCACAAATCTCCTCTCAGCAATCCCCTACATCGGAAGCACCCTTGTTGAATGAATTTGAGGGGGCTTCTCAGTTGATAAAGCCACCCTGACCCGCTTCTTCGCCTTCCATTTTATTCTGCCTTTTATCATCACGGCCTTCGCTTTAGTCCACCTACTATTCCTCCACGAGACAGGATCTAACAATCCATCGGGCTTAAACTCAGACTCCGACAAAATCCCATTCCACCCCTACTACACAATCAAAGATCTCCTGGGCATCTTCCTCCTATTATTAGCTCTCATAATTTTAGCCCTATTTTTCCCAGATGTCCTCGGGGACCCAGACAATTTTACCCCAGCAAACCCTCTCAACACTCCAGCACACATTAAGCCAGAGTGGTATTTCCTATTTGCTTACGCCATCCTTCGATCTATCCCCAACAAGCTTGGAGGCGTATTAGCCCTTATCCTCTCTATTCTCATTTTAGCAATTTTCCCACTACTGAATGTTTCCAAACAACACGGTTTAATTTTCCGACCTATCACACAAACCATTTACTGAACTTTTATTGCCAACCTTCTCGTACTTACATGAATTGGGGGGCAACCCGTTGAGTACCCATTCACAACAATTGGACAAATCGCATCAATCACATACTTCACTAT-ATTATCATTTTAATGCCAGTCTCTAATACCATCGA-AACAATATCATCAAACTC------------------------------------------------------------TAG
|
18
|
+
Seq17 ATGAAAATTTTACGGAAAAATCACCCACTACTTAAAATTGTTAATCACTCATTCATTGACCTACCAACCCCATCTAGCATCTCGTCTTGATGGAATTTTGGGTCACTACTTGGTGTGTGTCTGATAATTCAAATTCTGACCGGCCTATTCCTAGCCATACACTACACATCAGACACAACCACAGCATTCTCTTCAGTAGCTCACATCTGTCGAGATGTAAACTACGGATGATTAATCCGCTACCTACATGCTAACGGGGCTTCCATATTCTTTATCTGTCTCTTCATCCACGTAGGCCGAGGGATCTATTACGGTTCCTATGTCCTCTCAGAAACTTGAAACATCGGTATCATTCTATTTCTTACAACTATAGCAACAGCATTCGTAGGCTATGTGTTACCATGAGGACAAATATCTTTCTGAGGGGCCACTGTAATCACAAATCTCCTCTCAGCAATCCCCTACATCGGAAGCACCCTTGTTGAATGAATCTGAGGCGGCTTCTCAGTTGACAAAGCCACCTTAACCCGTTTCTTCGCCTTTCACTTTATCCTACCTTTTATCATCACAGCCTTGGTCCTAGTTCACCTACTGTTTCTTCACGAAACAGGATCCAACAACCCATCAGGTTTAAACTCAGACTCCGACAAAATCCCGTTCCACCCATACTACACAATCAAAGATCTCCTGGGCATCCTCCTTCTATTATTAGCTCTTATAATTCTAGCCTTATTTTTCCCCGATATCCTCGGAGACCCAGACAACTTTACCCCGGCAAACCCCCTCAACACTCCAGCACACATTAAGCCAGAATGGTATTTCCTATTTGCATACGCCATCCTCCGATCTATCCCCAATAAGCTTGGAGGTGTTCTAGCCCTCATCCTCTCTATTCTCATCCTAGCAACATTCCCATTATTAAATACTTCCAAACAACACGGTTTAATTTTCCGACCTATTACACAAACCATCTACTGAACTTTTATTGCTAACCTTCTTGTACTTACATGAATTGGGGGCCAACCTGTCGAATACCCATTCACAACAATTGGACAAATCGCATCAATCACCTACTTCACTATCATTATCATTTTAATGCCAGTCTCTAATACTATCGAAAATAATATCATCAAACTC------------------------------------------------------------TAA
|
19
|
+
Seq18 ATGAAAATTTTACGTAAAAATCACCCACTACTCAAAATTATAAATCACTCATTCATTGATCTGCCAGCTCCATCTAACATCTCATCCTGATGGAACTTTGGATCCCTACTTGGTACATGCCTAGTAATCCAAATCCTAACAGGCCTATTCTTAGCTATACACTACACATCAGACACAACCACAGCATTCTCCTCAGTAGCTCATATCTGCCGAGACGTAAACTACGGATGATTAATCCGCTACTTACACGCTAATGGAGCCTCCATATTCTTCATCTGCCTCTTCATCCACGTAGGCCGAGGAATCTACTACGGCTCCTACGTCCTTTCAAAAACTTGAAATATCGGCATTATCTTATTCCTCACAACTATAGCAACAGCATTTGTGGGGTACGTACTTCCATGAGGACAAATATCCTTCTGAGGGGCCACTGTAATTACAAACCTCCTCTCAGCCATCCCCTACATCGGAAGCACCCTAGTTGAATGAATCTGAGGAGGCTTTTCAGTTGACAAAGCTACCCTCACCCGCTTCTTCGCCTTCCACTTCATTCTACCTTTTATCATTGCAGCCTTCACCCTAGTTCACCTATTATTTCTTCACGAAACAGGATCCAACAACCCCTCAGGCTTAAACTCAAACTCTGATAAAATTCCATTCCACCCCTACTACACAACCAAAGATCTTCTAGGCATCTTTCTGCTACTACTAGCTCTCATAATTTTAACCTTATTTTTCCCAGACATCTTAGGAGACCCAGACAATTACACTCCAGCAAACCCTCTCAACACTCCAGCACACATTAAACCAGAGTGATATTTCCTATTTGCCTACGC-ATCCTTCGATCAATTCCTAACAAACTAGGAGGCGTCTTAGCCCTCATCCTTTCCATTCTCATCCTAGCAACATTCCCACTACTGAATAATTCCAAACAACACGGTTTAATTTTCCGACCTATTACACAAACCATCTACTGAATCTTCATTGCTAACCTTCTTGTTCTTACATGAATTGGAGGCCAACCTGTCGAGCTCCCATTCACAACAATTGGACAAATCGCATCAATTACCTACTTCGCTATCATTATCATCCTAATTCCAATCTCTAATGCTATCGAGAACAATATCATCAAGCTT------------------------------------------------------------TAG
|
20
|
+
Seq19 ATGAAAATTTTACGGAAAAATCACCCGCTACTCAAAATTGTTAATCACTCATTCATTGACCTACCAACTCCATCTAACATCTCATCCTGATGAAATTTTGGATCCCTACTAGGCATATGCCTAATAATCCAAATTTTAACAGGCCTATTCCTAGCCATACACTACACATCAGACACAACCACAGCATTCTCCTCAGTAGCACATATCTGCCGAGATGTAAACTACGGATGATTAATCCGCTACTTGCACGCTAATGGAGCCTCCATATTCTTTATCTGCCTCTTCATCCACGTAGGCCGAGGTATTTACTATGGTTCCTATACCCTCTCAGAAACCTGAAACATTGGCATCATCTTATTCCTCACAACTATAGCAACAGCATTTGTAGGATATGTACTCCCATGAGGACAAATATCCTTCTGGGGTGCCACCGTAATCACAAACCTCCTCTCAGCTATTCCCTACATCGGAAACACCCTAGTTGAATGAATCTGAGGTGGTTTTTCAGTTGACAAAGCCACCCTCACCCGCTTCTTCGCTTTTCACTTTATCTTACCCTTTATCATCACAGCCTTCGCCCTAGTTCACCTATTATTTCTTCACGAAACAGGGTCCAACAATCCATCAGGCCTAAATTCAGACTCTGACAAAATCCCGTTTCACCCCTACTACACAACCAAAGACCTCCTAGGCATCTTCCTTTTATTATTAGTTCTCATAATTTTAGCCTTATTTTTCCCAGACATTCTCGGAGACCCAGACAATTTTACCCCAGCAAATCCCCTCAACACCCCAGCACACATTAAACCAGAATGGTATTTTCTATTTGCCTATGCCATTCTCCGATCCATTCCCAACAAATTAGGGGGTGT-TTAGCCCTCGTCCTCTCCATTCTTATCCTAGCAGCATTCCCACTATTAAATACTTCCAAACAACACGGTTTAATTTTCCGACCTATCACACAAGTCATTTACTGAATTTTCATTG-TAACCTTCTCGTACTTACATGAATCGGAGGGCAGCCTGTCGAATATCCA-TCACAATAATTGGACAAATCGCATCAATTACATACTTCGCTATCATTATTATTCTTATCCCAGTCTCCAACACTATCGAGAACAATATTATTAAGCTC------------------------------------------------------------TAA
|
21
|
+
Seq20 ATGAAAATCTTACGGAAAAATCATCCACTGCTTAAAATTGTTAATCACTCATTCATTGATCTACCAACTCCATCCAACATCTCATCCTGATGGAATTTTGGATCTCTTCTAGGAATATGCTTAGTAATCCAAATTCTAACAGGCCTATTCCTAGCCATACACTACACATCAGACACAACCACAGCATTCTCCTCAGTAGCCCATATCTGCCGAGATGTAAACTACGGATGGCTGATCCGCTACTTACACGCCAACGGGGCCTCCATATTCTTTATCTGCCTTTTCATCCACGTAGGCCGAGGGATTTACTACGGCTCCTACGTCCTCTCAGAAACCTGAAACATCGGCATCATCTTACTTCTCACAACCATAGCAACAGCATTTGTGGGATACGTACTCCCATGAGGACAAATATCTTTTTGAGGGGCTACCGTAATCACAAACCTTCTTTCAGCCATCCCATACATCGGAAACACCCTAGTTGAATGAATCTGAGGTGGCTTTTCAGTCGACAAAGCTACCCTCACTCGCTTTTTCGCTCTCCATTTCATCTTACCCTTTATCATTGCAGCCTTTGCCCTAGTTCACCTCCTGTTTCTCCACGAAACAGGGTCCAATAACCCATCAGGCTTAAACTCAGATTCTGACAAAATTCCATTTCACCCCTACTACACTACCAAAGATCTCTTAGGCATCTTCCTTTTATTATTAGTTCTCATAATTTTAGCCTTATTTTTCCCAGACGTCCTAGGAGACCCAGACAATTTTACCCCAGCAAATCCTCTCAACACCCCAGCACACATTAAACCGGAGTGATATTTTCTATTTGCCTACGCTATCCTCCGATCCATTCCCAACAAATTAGGGGGCGTTCTAGCCCTCGTCCTTTCCATCCTCATCCTAGCAGCATTCCCATTACTAAATACTTCCAAACAACACGGTTTAATTTTCCGACCTGTCACACAAGTCATTTACTGAATCTTTATCGCTAACCTTCTTGTACTTACATGAATCGGAGGCCAACCTGTCGAATACCCATTCACAACAATCGGACAAATCGCGTCAGTTACCTACTTCGCAACTATCATTATCCTAATCCCAGTCTCTAATACTATCGAAAATAATATTATCAAGCTC------------------------------------------------------------TAA
|
@@ -0,0 +1,2 @@
|
|
1
|
+
((Seq14,Seq10),((Seq18,((Seq20,Seq19),(Seq17,(Seq15,Seq16)))),((Seq13,(Seq11,Seq12)),((Seq5,(Seq4,(Seq2,(Seq7,(Seq3,Seq6))))),(Seq9,Seq8)))),Seq1);
|
2
|
+
((Seq14,Seq10),((Seq18,((Seq20,Seq19),(Seq17,(Seq15,Seq16)))),((Seq13,(Seq11,Seq12)),((Seq5,(Seq4,(Seq2,(Seq7,(Seq3,Seq6))))),(Seq9,Seq8)))),Seq1);
|
@@ -0,0 +1 @@
|
|
1
|
+
((Seq5,(Seq4,(Seq2,(Seq7,(Seq3,Seq6))))),(Seq9,Seq8),Seq1);
|
data/test/testdata/9
ADDED
@@ -0,0 +1,10 @@
|
|
1
|
+
9 1200
|
2
|
+
Seq1 ATGACCAACATTCGAAAATCACACCCCCTTATCAAAATCGTTAATCACTCATTCATCGATTTACCCACCCCACCTAACATTTCAGCATGATGAAACTTCGGCTCCCTACTAGGAGTCTGCCTAGTCCTACAGATCCTAACCGGCCTTTTCCTAGCCATACACTACACATCAGACACAATAACCGCCTTTTCATCAGTTACTCACATCTGCCGCGACGTCAACTACGGCTGAATTATTCGATACATGCACGCCAACGGAGCCTCTATATTCTTTATCTGCCTATACATGCATGTAGGACGAGGAATATACTACGGCTCCTACACCTTCTCAGAAACATGAAATATTGGAATCATACTACTACTCACAGTCATAGCCACAGCCTTCATAGGATATGTCTTACCATGAGGTCAAATATCTTTCTGAGGAGCAACTGTAATTACCAACCTCCTATCAGCAATTCCTTACATCGGCACTAATCTAGTAGAGTGAATTTGAGGAGGTTTCTCGGTAGACAAAGCTACCCTGACACGATTCTTTGCCTTCCACTTTATCCTTCCATTCATCATCTCAGCCCTAGCAGCAGTACACCTCTTATTTCTCCACGAGACAGGATCCAATAACCCCTCAGGAATCACATCCGACTCAGACAAAATTCCATTCCACCCATACTACATAATCAAGGACATTCTAGGTCTCCTAATACTAATTTTAATACTCACACTACTCGTCCTCTTCTCACCAGACCTGTTAGGAGATCCAGACAACTACATCCCCGCCAACCCCCTAAACACTCCTCCCCATATTAAACCCGAATGATATTTTTTATTCGCATACGCAATCCTCCGATCCATCCCTAACAAATTAGGAGGAGTCCTAGCCCTAATATTCTCCATCCTAATCCTAGCAATCATTCCAATTTTCCACACCTCCAAACAACGAGGAATAATATTTCGACCACTAAGCCAATGCTTATTCTGACTCCTAGTAGCAGACCTCCTCACCCTAACATGAATTGGCGGCCAACCTGTAGAACACCCCTTTATTACCATCGGCCAACTAGCCTCCATTCTATACTTCTCAACCCTCCTAGTTCTAATACCTATTTCAGGCATCATCGAAAACCGCCTCCTA------AAATGA------------------------------------------------------AGA
|
3
|
+
Seq2 ATGAAAATTATACGAAAAACACACCCACTCCTAAAAATCATTAACCATGCATTCGTCGACCTCCCTGCACCCTCCAACATCTCATCATGATGAAACTTCGGCTCTCTATTAGGAGTATGCCTAATAATCCAAATCCTCACAGGACTGTTTCTAGCAATACACTACACCTCAGACACTATAACAGCATTCTCATCCGTAACCCACATCTGCCGAGACGTAAATTACGGTTGACTGATTCGATACCTCCATGCAAACGGAGCCTCCATGTTCTTCATGTGCTTATTCATACACGTAGGACGAGGCATCTACTATGGGTCCTACACCTTTATAGAGACATGAAACCTTGGTATTATTCTACTGTTTGCCGTAATAGCAACTGCATTTATAGGATATGTCCTCCCATGGGGGCAAATATCCTTCTGAGGGGCCACAGTCATCACAAACCTACTTTCAGCCATCCCCTACATCGGTACTAACCTAGTAGAATGAATCTGAGGCGGATTTTCAGTAGACAAAGCCACCCTTACACGCTTCTTCGCATTCCACTTTATCCTCCCCTTTATTATTGCAGCTCTGGCCATGGTACACCTACTTTTTCTCCACGAAACAGGCTCTAATAACCCCACAGGAATGAACTCCGATGCAGACAAAATCCCCTTCCACCCCTACTACACAATCAAAGACCTCTTAGGTGTATTCCTCATACTGTCAGTCCTCCTCCTATTAGTACTTTTCTCCCCAGACCTATTAGGAGACCCCGACAACTATACACCAGCTAACCCCCTAAACACCCCTCCTCACATTAAGCCAGAATGATACTTTCTATTTGCATATGCTATCCTACGCTCTATCCCCAACAAACTAGGAGGCGTATTAGCCCTAGTACTATCCATCCTAATCCTAGCTTTTATACCTCTCACCTACACCTTAAAACAACGAATCTTAATATTCCGCCCAATCAGCCAGACCATATTCTGAATCCTAGCAGCCAACCTACTTATCCTAACCTGAATCGGAGGACAACCCGTAGAACACCCCTTCATCATTATTGGCCAACTAGCTTCAATCAGCTACTTCTCCATCATTTTAATTCTAATACCAATCTCAGGACTAATCGAAAACAAAATACTAAAACTA------AAC---------------------------------------------------T--
|
4
|
+
Seq3 ATGAAAATTATACGAAAAACACACCCACTCCTAAAAATCATTAATCACGCATTCGTCGACCTCCCTGCACCCTCTAACATCTCATCATGATGAAACTTCGGCTCCCTATTAGGAGTATGCCTAATAATCCAAATCCTCACAGGACTATTTCTAGCAATACACTACACCTCCGACACTACAACAGCATTCTCATCCGTAACCCACATCTGCCGAGACGTAAACTACGGCTGATTAATTCGATACCTCCATGCAAATGGGGCTTCCATATTCTTCATGTGCTTATTCATACACGTAGGACGAGGCATTTATTATGGGTCTTACACCTTCACAGAGACATGAAACCTTGGTATCATTCTACTGTTTGCCGTAATAGCAACTGCATTTATAGGATATGTCCTTCCATGGGGACAAATATCCTTCTGAGGGGCCACAGTCATTACAAACCTACTCTCAGCCATCCCCTACATCGGCACTGACCTGGTAGAGTGAATCTGAGGCGGGTTTTCAGTAGACAAAGCCACCCTTACACGCTTCTTCGCATTCCACTTTATTCTCCCCTTTATCATTGCAGCCCTAGCCATAGTACACCTACTCTTTCTACACGAAACAGGCTCTAATAACCCCACAGGAGTGAACTCCGATGCAGACAAAATCCCCTTCCACCCCTACTACACAATCAAAGACCTTTTAGGTGTATTCCTCATACTATTAGTCCTCCTCCTATTAGTACTATTCTCCCCAGACCTACTAGGAGACCCCGACAACTACACACCAGCTAACCCCCTGAACACCCCTCCTCACATTAAACCAGAATGATATTTCCTATTCGCATATGCTATTCTACGCTCCATCCCCAACAAACTCGGAGGCGTACTAGCTCTAGTAATATCTATCCTAATCCTAATTTTCATACCCCTCACCCACACCTCAAAACAACGAAGCTTAATATTCCGCCCAATCAGTCAGGCTATATTCTGAATCCTAACAGCTAACCTACTTATCCTAACCTGAATCGGAGGACAACCCGTAGAACACCCCTTTATCATTATCGGCCAACTAGCTTCAATCAGCTATTTCTCCATCATTTTAATCCTAATACCAATCTCAGGACTAATTGAAAACAAAATACTAAAATTA------AAC---------------------------------------------------T--
|
5
|
+
Seq4 ATGAAAATTATACGAAAAACACACCCACTCATAAAAATTATCAACCACGCATTCATCGATCTCCCTGCACCCTCCAACATCTCATCATGATGAAACTTTGGTTCTCTATTAGGAGTATGCCTAATAGTCCAAATCCTCACAGGCCTATTCTTAGCAATACACTACACCTCCGACACTATAACAGCATTCACATCCGTAACCCACATCTGCCGAGACGTAAACTACGGCTGATTAATTCGATATCTCCATGCAAACGGAGCCTCCATATTCTTCGTATGCTTGTTTATACACGTAGGACGAGGAATCTACTATGGATCTTACACCTTTACAGAAACATGAAATCTTGGTGTTATTCTACTATTTGCCGTAATAGCAACTGCATTTATAGGATATGTACTTCCATGAGGACAAATATCCTTCTGAGGAGCCACAGTCATTACAAACCTTCTCTCAGCTATTCCCTACATCGGTACTAACCTAGTAGAATGAATTTGAGGGGGGTTCTCAGTAGACAAAGCCACCCTCACACGCTTCTTCGCATTCCACTTTATCCTTCCATTTATCATTGCAGCCCTAGCCATAGTACACCTACTATTCCTCCACGAAACAGGCTCTAATAACCCCACAGGAATGAACTCTGACGCAGATAAAATTCCCTTTCACCCCTACTATACAATCAAAGACCTCTTAGGCGTATTTCTCATACTACTAGTTCTCCTACTATTAGTACTATTTTCCCCAGACTTATTAGGAGACCCCGACAACTACACACCAGCCAACCCCCTAAATACCCCTCCCCACATTAAACCAGAGTGATATTTTCTATT-GCATACGCTATCCTACGCTCTATCCCCAATAAACTTGGAGGCGTACTAGCCCTAGTACTATCTATCCTAATCCTAATTCTCATACCCTTAATCCATACCTCAAAACAACGAAGCTTAATATTCCGTCCAATTAGCCAAATCATATTCTGAATCCTAACAGCTAACCTACTCATCCTGACCTGAATCGGAGGACAACCCGTAGAACATCCCTTTATCATTATCGGCCAACTAGCTTCAATCAGCTATTTCTCCATTATTCTAATCCTAATACCGATCTCAGGACTAATTGAAAATAAAATACTAAAATTA------AAC---------------------------------------------------T--
|
6
|
+
Seq5 ATGAAAAACATACGAAAAACGCAACCACTCCTAAAAATTATTAACCACGAATTCATTGA-TTTCCTGAAACATCCAA-ATCTCATCATGATGAAACTTTGGCTCTCTACTAGGCATCTGCCTAGTAATCCAGATCCTAACAGGCTTATTCCTAGCAATACACTATACCTCCGACACCACCACAGCATTTTCATCTGTAACCCACATTTGCCGAGACGTAAACTACGGCTGACTGATTCGTTACCTCCATGCAAATGGAGCCTCCATATTCTTCATGTGCCTGTTCATACATGTAGGACGGGGAATCTACTACGGATCTTATACCTTCATAGAAACCTGAAATCTCGGCATTATTCTACTGTTCGCCGTAATAGCAACTGCATTTATAGGATATGTACTCCCATGAGGACAGATATCCTTCTGAGGGGCCACAGTCATTACAAATCTACTCTCAGCTATCCCCTACATCGGAACTAATCTAGTAGAGTGAATTTGAGGAGGCTTCTCAGTAGACAAAGCCACTCTAACACGCTTTTTCGCATTCCACTTTATCCTACCCTTTATCATTGCAGCCCTAGCTATAGTCCACCTACTATTCCTCCACGAAACAGGATCTAACAA-CCCACCGGGATAAACTCTGACGCAGATAAAATCCCCTTTCATCCCTACTACACAATTAAAGATCTCCTAGGAGTATTCCTAATATTAACAGCCCTACTCTTATTAGTCCTCTTCTCCCCAGACTTATTAGGAGACCCCGACAACTACACACCAGCCAACCCCCTAAACACCCCTCCCCACATCAAACCAGAATGATATTTCCTATTTGCATACGCCATCCTACGCTCTATTCCTAACAAACTCGGAGGAGTACTAGCCCTAGTGCTATCAATCCTAATCCTAATTTTTTTACCCTTCATCCACACTTCCAAACAACGAAGCCTAATATTCCGCCCAATCAGCCAAACCATATTTTGAATCCTAGCAGCAAATCTTCTTGTCCTAACCTGAATCGGAGGACAACCTGTAGAATACCCCTTCACCATTATTGGCCAACTAGCCTCAATCAGTTATTTCTCTATTATCCTAATCCTACTACCAATCTCAGGTCTAATC-AAAATAAAATAATAAAAATA------AAC---------------------------------------------------T--
|
7
|
+
Seq6 ATGAAAATTATACGAAAAACACACCCACTCCTAAAAATCATTAATCACGCATTCGTCGACCTCCCTGCACCCTCTAACATCTCATCATGATGAAACTTCGGCTCCCTATTAGGAGTATGCCTAATAATCCAAATCCTCACAGGACTATTTCTAGCAATACACTACACCTCCGACACTACAACAGCATTCTCATCCGTAACCCACATCTGCCGAGACGTAAACTACGGCTGATTAATTCGATACCTCCATGCAAATGGGGCTTCCATATTCTTCATGTGCTTATTCATACACGTAGGACGAGGCATTTATTATGGGTCTTACACCTTCACAGAGACATGAAACCTTGGTATCATTCTACTGTTTGCCGTAATAGCAACTGCATTTATAGGATATGTCCTTCCATGGGGACAAATATCCTTCTGAGGGGCCACAGTCATTACAAACCTACTCTCAGCCATCCCCTACATCGGCACTGACCTGGTAGAGTGAATCTGAGGCGGGTTTTCAGTAGACAAAGCCACCCTTACACGCTTCTTCGCATTCCACTTTATTCTCCCCTTTATCATTGCAGCCCTAGCCATAGTACACCTACTCTTTCTACACGAAACAGGCTCTAATAACCCCACAGGAGTGAACTCCGATGCAGACAAAATCCCCTTCCACCCCTACTACACAATCAAAGACCTTTTAGGTGTATTCCTCATACTATTAGCCCTCCTCCTATTAGTACTATTCTCCCCAGACCTACTAGGAGACCCCGACAACTACACACCAGCTAACCCCCTGAACACCCCTCCTCACATTAAACCAGAATGATATTTCCTATTCGCATATGCTATTCTACGCTCCATCCCCAACAAACTCGGAGGCGTACTAGCTCTAGTAATATCTATCCTAATCCTAATTTTCATACCCCTCACCCACACCTCAAAACAACGAAGCTTAATATTCCGCCCAATCAGTCAGGCTATATTCTGAATCCTAACAGCTAACCTACTTATCCTAACCTGAATCGGAGGACAACCCGTAGAACACCCCTTTATCATTATCGGCCAACTAGCTTCAATCAGCTATTTCTCCATCATTTTAATCCTAATACCAATCTCAGGACTAATTGAAAACAAAATACTAAAATTA------AAC---------------------------------------------------T--
|
8
|
+
Seq7 ATGAAAATTATACGAAAAACACACCCACTCCTAAAAATCATTAATCACGCATTCGTCGACCTCCCTGCACCCTCTAATATCTCATCATGATGAAACTTCGGCTCCCTATTAGGAGTATGCCTAGTAATCCAAATCCTCACAGGATTATTTCTAGCAATACACTACACCTCCGACACTATAACAGCATTCTCATCCGTAACCCACATCTGCCGAGACGTAAACTACGGCTGATTAATTCGATACCTCCATGCAAATGGGGCTTCCATATTCTTCGTGTGCTTATTCATACACGTAGGACGAGGCATTTATTATGGATCTTACACCTTCACAGAGACATGAAACCTTGGTATCATTCTACTGTTTGCCGTAATAGCAACTGCATTTATAGGGTATGTCCTTCCATGGGGACAAATATCCTTCTGAGGGGCCACAGTCATTACAAACCTACTCTCAGCCATCCCCTACATCGGCACTGACCTGGTAGAGTGAATCTGAGGCGGGTTTTCAGTAGACAAAGCCACCCTTACACGCTTCTTCGCATTCCACTTTATTCTCCCCTTTATCATTGCAGCCCTAGCCATAGTACACCTACTCTTTCTACACGAAACAGGCTCTAATAACCCCACAGGAGTAAACTCCGATGCAGACAAAATCCCCTTCCACCCCTACTACACAATCAAAGACCTTTTAGGTGTTTTCCTCATACTATTAGTCCTCCTCCTACTAGTACTATTCTCCCCAGATCTACTAGGAGACCCCGACAACTACACACCAGCTAACCCCCTGAACACCCCTCCTCACATTAAACCAGAATGGTATTTCCTATTCGCATATGCTATTCTACGCTCCATCCCCAACAAACTCGGAGGTGTACTAGCTCTAGTAATATCTATCCTAATCCTAATTTTCATACCCCTCACCCACACCTCAAAACAACGAAGCTTAATATTCCGCCCAATCAGTCAGGCTATATTCTGAATCCTAACAGCTAACCTACTTATCCTAACCTGAATCGGAGGACAACCCGTAGAACACCCCTTTATCATTATCGGCCAACTAGCTTCAATCAGCTACTTCTCCATTATTTTAATCCTAATACCAATCTCAGGACTAATTGAAAACAAAATACTAAAATTA------AAC---------------------------------------------------T--
|
9
|
+
Seq8 ATGAAAAACATACGAAAATCACACCCACTACTAAAAATCATTAATCTCGCATTTATTGACCTACCCGCACCATCCAATATCTCATCATGATGAAACTTTGGGTCCCTTCTAGGAGTCTGTCTAGTAGTACAAATTATCACAGGACTATTTCTAGCAATACACTACACCTCTGATACCACAACAGCATTTTCATCTGTAACTCATATCTGCCGAGATGTAAACTACGGTTGATTGATTCGATATCTTCATGCAAACGGAGCCTCAATATTCTTCATGTGCCTATTTATACACGTAGGACGAGGAATCTACTACGGATCCTACACCTTTACAGAAACCTGAAATATTGGCATTATTCTACTGTTCGCCGTAATAGCAACTGCATTTATAGGATATGTGCTTCCCTGAGGACAAATATCCTTCTGAGGAGCCACAGTTATTACTAACCTTCTCTCAGCAGTTCCCTACATCGGTACTAATTTAGTAGAATGAATCTGAGGGGGGTTCTCAGTAGACAAAGCCACTCTTACACGCTTCTTCGCATTCCATTTTATCCTCCCATTCATCATTGCAGCCCTAGCTATAGTCCACCTACTTTTTCTCCACGAAACTGGATCCAATAACCCCACCGGAATCAACTCTGATGCAGACAAAATTCCATTCCATCCGTACTACACTATAAAAGACTTCCTAGGGGCCCTACTCATGTTAGTAGTTCTACTCCTACTTGTTTTATTTTCCCCAGATATTTTAGGCGACCCAGATAATTATACACCAGCTAACCCCCTAAACACACCTCCTCACATCAAACCAGAGTGATATTTCCTATTCGCCTACGCTATCCTACGTTCTATCCCCAATAAACTAGGAGGAGTGTTAGCTTTAGTACTATCCATCCTTGTCCTAGCCTTGCTACCTCTCATGCACACCTCAAAACAACGAAGCCTTATGTTCCGCCCAATTAGCCAAATCCTATTTTGAATACTAACAGCTAATCTTCTAATTCTAACCTGAATTGGGGGACAACCAGTAGAACACCCCTTCATTATCATTGGACAAGTAGCTTCAATCAGCTACTTCTCTATTATTTTAATCCTAATACCAATCTCAGGACTAATCGAAAACAAAATACTAAAACTT------------------------------------------------------------T--
|
10
|
+
Seq9 ATGACAAACATCCGAAAAACACACCCCCTACTTAAAATTATTAATAACGCATTCATTGACCTACCAGCCCCATCCAACATTTCATCATGATGAAACTTCGGGTCTTTACTAGGAATCTGCTTAATCATCCAAATCATCACAGGACTTTTCCTAGCCATACATTACACCTCAGACACCTCAACAGCATTCTCATCTGTTACCCATATTTGCCGAGATGTAAACTACGGTTGACTTATTCGCTATCTTCATGCAAACGGAGCCTCCATATTCTTTGTCTGCTTATTTATACATGTTGGACGAGGAATCTATTACGGATCTTATACCTACATAGAAACATGAAATATCGGCATCATTCTACTGTTCGCCGTAATAGCAACTGCATTTATAGGATATGTACTTCCATGAGGACAAATATCTTTTTGAGGGGCCACAGTCATTACCAACCTACTATCAGCTATCCCTTACATTGGCACTAACTTAGTAGAATGAATTTGAGGTGGATTTTCCGTAGATAAAGCCACCCTAACACGATTCTTCGCCTTCCACTTTATTCTCCCATTTATCATCGCTGCCCTAGCCATAGTTCATCTTCTTTTCCTTCACGAAACAGGATCTAATAATCCTACCGGAATTAACTCCGACACTGACAAAATTCCCTTTCATCCTTACTACACAACAAAAGACCTATTAGGAGCTCTAATACTCATTATAGTCCTACTAGCACTAGTATTATTTTCACCTGACCTCCTAGGAGACCCAGATAACTACACACCAGCTAACCCATTAAATACACCTCCCCATATCAAACCAGAATGATATTTCTTATTCGCCTACGCAATCCTCCGATCCATCCCTAACAAACTAGGAGGAGTCTTAGCCCTGGTCTTATCAATCCTAGTCCTAGCAATCCTCCCACTAATCCACACCTCAAAACAACGAAGCCTCATATTCCGCCCAATTAGCCAAACCCTATTCTGAATCCTAGTGGCCAACCTATTAATCCTTACCTGAATCGGAGGACAACCCGTAGAACACCCCTTCATCATCATCGGCCAACTAGCTTCCATCAGCTACTTCACAATCATCCTAACTCTCATTCCTATCTCAGGCCTAATCGAAAATAAAATAATG------AAATGAAAC---------------------------------------------------T--
|
metadata
CHANGED
@@ -1,13 +1,13 @@
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
2
2
|
name: rnewick
|
3
3
|
version: !ruby/object:Gem::Version
|
4
|
-
hash:
|
4
|
+
hash: 25
|
5
5
|
prerelease:
|
6
6
|
segments:
|
7
7
|
- 0
|
8
8
|
- 1
|
9
|
-
-
|
10
|
-
version: 0.1.
|
9
|
+
- 1
|
10
|
+
version: 0.1.1
|
11
11
|
platform: ruby
|
12
12
|
authors:
|
13
13
|
- Fernando Izquierdo-Carrasco
|
@@ -15,7 +15,7 @@ autorequire:
|
|
15
15
|
bindir: bin
|
16
16
|
cert_chain: []
|
17
17
|
|
18
|
-
date: 2012-
|
18
|
+
date: 2012-04-11 00:00:00 Z
|
19
19
|
dependencies:
|
20
20
|
- !ruby/object:Gem::Dependency
|
21
21
|
type: :development
|
@@ -110,8 +110,13 @@ files:
|
|
110
110
|
- Rakefile
|
111
111
|
- VERSION
|
112
112
|
- lib/rnewick.rb
|
113
|
+
- rnewick.gemspec
|
113
114
|
- test/helper.rb
|
114
115
|
- test/test_rnewick.rb
|
116
|
+
- test/testdata/20
|
117
|
+
- test/testdata/20start.nw
|
118
|
+
- test/testdata/20start.nw.pruned_to.9
|
119
|
+
- test/testdata/9
|
115
120
|
homepage: http://github.com/fizquierdo/rnewick
|
116
121
|
licenses:
|
117
122
|
- MIT
|