ripe 0.0.1

checksums.yaml

@@ -0,0 +1,7 @@
+---
+SHA1:
+  metadata.gz: f0ae395af344b3bc8349fbd1e028a80be84bbd77
+  data.tar.gz: 067f49928266b15f63c2cd021a162f14678be86d
+SHA512:
+  metadata.gz: 6778dfe639d44a022296592ad693da8f7bcdc30dca8506fb26d0ab75533bc5fbc17fba738cc0c13c765191695883abc7b501b1a2aca1b4a9350e6aa2db8dd834
+  data.tar.gz: 1efa8def1b83a718604001fd7cc875f6ec28919813485a5006b4db340dfd8dc9697d08c799b06b17733c17908f542b5fbdbf6dcbf8e4cd14b39ac1a51b0af9b0

data/.gitignore

@@ -0,0 +1,15 @@
+/.bundle/
+/.yardoc
+/Gemfile.lock
+/_yardoc/
+/coverage/
+/doc/
+/pkg/
+/spec/reports/
+/tmp/
+*.bundle
+*.so
+*.o
+*.a
+mkmf.log
+*.gem

data/.travis.yml

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+language: ruby
+cache: bundler 
+
+rvm:
+  - 2.1.5
+
+script: 'bundle exec rake'
+
+notifications:
+  email: false
+
+# notifications:
+#   email:
+#     recipients:
+#       - my@email.com
+#     on_failure: change
+#     on_success: never

data/Gemfile

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+source 'https://rubygems.org'
+
+# Specify your gem's dependencies in ripe.gemspec
+gemspec

data/LICENSE.txt

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+Copyright (c) 2013-2015 Nicolas De Jay
+
+MIT License
+
+Permission is hereby granted, free of charge, to any person obtaining
+a copy of this software and associated documentation files (the
+"Software"), to deal in the Software without restriction, including
+without limitation the rights to use, copy, modify, merge, publish,
+distribute, sublicense, and/or sell copies of the Software, and to
+permit persons to whom the Software is furnished to do so, subject to
+the following conditions:
+
+The above copyright notice and this permission notice shall be
+included in all copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
+EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
+MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
+NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE
+LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION
+OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION
+WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.

data/README.md

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+# Ripe
+[![Build Status](https://travis-ci.org/ndejay/ripe.svg)](https://travis-ci.org/ndejay/ripe)
+
+ripe is an abstraction layer between the MOAB/Torque stack and your pipeline.
+
+With ripe, you can easily collate tasks into workflows which can then be
+applied to samples without the headache of manually dealing with the queuing
+system.
+
+Notes:
+
+- MOAB is a scheduler -- it takes care of priorities and allocations.
+- Torque is a resource manager -- it launches the jobs on the nodes.
+
+## Installation
+
+Add this line to your application's Gemfile:
+
+```ruby
+gem 'ripe', :git => 'git://github.com/ndejay/ripe.git'
+```
+
+And then execute:
+
+    $ bundle
+
+Or install it yourself as:
+
+    $ gem install ripe
+
+## Usage
+
+TODO: Write usage instructions here
+
+## Contributing
+
+1. Fork it ( https://github.com/ndejay/ripe/fork )
+2. Create your feature branch (`git checkout -b my-new-feature`)
+3. Commit your changes (`git commit -am 'Add some feature'`)
+4. Push to the branch (`git push origin my-new-feature`)
+5. Create a new Pull Request

data/Rakefile

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+require 'rspec/core/rake_task'
+require 'bundler/gem_tasks'
+
+# Default directory to look in is `/specs`
+# Run with `rake spec`
+
+RSpec::Core::RakeTask.new(:spec) do |task|
+#  task.rspec_opts = ['--color', '--format', 'nested']
+end
+
+task :default => :spec

data/bin/ripe

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+#!/usr/bin/env ruby
+
+require 'ripe'
+require 'thor'
+
+include Ripe
+
+# Look for workflows and blocks in ./.ripe wherever invoked, then in
+# directories specified in the $RIPELIB environment variable.
+$RIPELIBS = "#{ENV['PWD']}/.ripe:#{ENV['RIPELIB']}".split(/:/)
+
+def Task(handle, vars = {})
+  WorkingBlock.new($RIPELIBS.map{ |path| "#{path}/tasks/#{handle}.sh" }.select{ |path| File.exists? path }.first, vars)
+end
+
+class CLI < Thor
+  desc 'console', 'Enter ripe console'
+  def console
+    require 'irb'
+    require 'irbtools'
+
+    ARGV.clear # This is necessary because otherwise all arguments
+               # get sent to IRB
+
+    $ripe = Controller.new
+    $ripe.attach
+
+    IRB.start "ripe #{Ripe::VERSION}"
+  end
+
+  desc 'prepare SAMPLES', 'Prepare jobs from template workflow'
+  option :workflow, :aliases => '-w', :type => :string, :required => true,
+    :desc => 'Workflow to be applied'
+  option :options, :aliases => '-o', :type => :string, :required => false,
+    :desc => 'Options', :default => ''
+  def prepare(*samples)
+    return if (samples.length == 0)
+
+    additional_vars = options[:options].split(/,/).map do |pair|
+      key, value = pair.split(/=/)
+      { key.to_sym => value }
+    end
+    additional_vars = additional_vars.inject(&:merge) || {}
+
+    # Expect $callback to be a lambda function that takes one argument (sample)
+    # and returns a Block, and $vars to be a dictionary mapping arguments to
+    # values (i.e. resource allocation)
+    workflows = $RIPELIBS.map{ |path| "#{path}/workflows/#{options[:workflow]}.rb" }
+    require_relative workflows.select{ |path| File.exists? path }.first
+
+    $ripe = Controller.new
+    $ripe.attach_or_create # Create .ripe if it doesn't exist
+    $ripe.prepare(samples, $callback, $vars.merge(additional_vars))
+  end
+
+  desc 'version', 'Retrieve ripe version'
+  def version
+    puts "ripe version #{Ripe::VERSION}"
+  end
+end
+
+CLI.start(ARGV)

data/lib/ripe/block.rb

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+require_relative 'parallel_block'
+require_relative 'serial_block'
+
+module Ripe
+  class Block
+    attr_reader :id, :blocks
+    attr_accessor :vars
+
+    def initialize(id, blocks = [], vars = {})
+      @id, @blocks, @vars = id, blocks, vars
+    end
+
+    def prune(protect, depend)
+      self
+    end
+
+    # Syntactic sugar of the form: Block1 | Block2 | Block3
+    def |(block)
+      ParallelBlock.new(self, block)
+    end
+
+    # Syntactic sugar of the form: Block1 + Block2 + Block3
+    def +(block)
+      SerialBlock.new(self, block)
+    end
+  end
+end
+
+class NilClass
+  # Syntactic sugar of the form: nil | Block1
+  def |(block)
+    raise NoMethodError unless Block > block.class
+    block
+  end
+
+  # Syntactic sugar of the form: nil + Block1
+  def +(block)
+    raise NoMethodError unless Block > block.class
+    block
+  end
+end

data/lib/ripe/controller.rb

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+require 'active_record'
+require 'fileutils'
+require_relative 'block'
+require_relative 'worker'
+require_relative 'worker_migration'
+require_relative 'working_block'
+require_relative 'liquid_block'
+require_relative 'task'
+require_relative 'task_migration'
+
+module Ripe
+  class Controller
+    def initialize
+      @repository_path = '.ripe'
+      @has_repository = Dir.exists? @repository_path
+    end
+
+    def attach
+      ActiveRecord::Base.establish_connection({
+        adapter:  'sqlite3',
+        database: "#{@repository_path}/meta.db"
+      })
+    end
+
+    def attach_or_create
+      @has_repository ? attach : create
+    end
+
+    def create
+      FileUtils.mkdir_p(@repository_path)
+      @has_repository = true
+
+      begin
+        attach
+        WorkerMigration.up
+        TaskMigration.up
+      rescue
+        destroy
+      end
+    end
+
+    def destroy
+      FileUtils.rm("#{@repository_path}/meta.db") if File.exists? "#{@repository_path}/meta.db"
+      FileUtils.rm("#{@repository_path}/workers") if Dir.exists?  "#{@repository_path}/workers"
+    end
+
+    def prepare(samples, callback, vars = {})
+      Worker.prepare(samples, callback, vars)
+    end
+  end
+end

data/lib/ripe/liquid_block.rb

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+require 'liquid'
+require_relative 'working_block'
+
+module Ripe
+  class LiquidBlock < WorkingBlock
+    def initialize(filename, vars = {})
+      super(filename, vars)
+    end
+
+    def command
+      vars = @vars.inject({}) { |memo, (k, v)| memo[k.to_s] = v; memo }
+
+      template = Liquid::Template.parse(File.new(@filename).read)
+      template.render(vars)
+    end
+  end
+end

data/lib/ripe/multi_block.rb

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+require_relative 'block'
+
+module Ripe
+  # Forward declaration to prevent cyclic dependencies
+  class Block; end
+
+  class MultiBlock < Block
+    def initialize(id, *blocks)
+      # Ignore nil objects
+      super(id, blocks.compact, {})
+    end
+
+    def prune(protect, depend)
+      return self if protect
+
+      @blocks = @blocks.map { |block| block.prune(protect, depend) }.compact
+      case @blocks.length
+      when 0
+        nil
+      when 1
+        @blocks.first
+      else
+        self
+      end
+    end
+
+    def topology
+      [@id] + @blocks.map(&:topology)
+    end
+
+    def targets_exist?
+      @blocks.map(&:targets_exist?).inject(:&)
+    end
+  end
+end

data/lib/ripe/parallel_block.rb

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+require_relative 'multi_block'
+
+module Ripe
+  class ParallelBlock < MultiBlock
+    def initialize(*blocks)
+      super(:|, *blocks)
+    end
+
+    def command
+      @blocks.map { |block| "(\n%s\n) & " % block.command }.join('') + 'wait'
+    end
+  end
+end

data/lib/ripe/serial_block.rb

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+require_relative 'multi_block'
+
+module Ripe
+  class SerialBlock < MultiBlock
+    def initialize(*blocks)
+      super(:+, *blocks)
+    end
+
+    def command
+      @blocks.map { |block| "(\n%s\n)" % block.command }.join(' ; ')
+    end
+
+    alias :super_prune :prune
+
+    def prune(protect, depend)
+      return super_prune(protect, depend) if !depend
+      return self if protect
+
+      @blocks = @blocks.map do |block|
+        new_protect = !block.targets_exist?
+        new_block = block.prune(protect, depend)
+        protect = new_protect
+        new_block
+      end
+      @blocks = @blocks.compact
+
+      case @blocks.length
+      when 0
+        nil
+      when 1
+        @blocks.first
+      else
+        self
+      end
+    end
+  end
+end

data/lib/ripe/task.rb

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+require 'active_record'
+require 'fileutils'
+require_relative 'worker'
+
+module Ripe
+  class Task < ActiveRecord::Base
+    belongs_to :worker
+
+    def dir
+      "#{self.worker.dir}"
+    end
+
+    def log
+      "#{self.dir}/#{self.id}.log"
+    end
+  end
+end

data/lib/ripe/task_migration.rb

@@ -0,0 +1,18 @@
+require 'active_record'
+require_relative 'worker'
+
+module Ripe
+  class TaskMigration < ActiveRecord::Migration
+    def self.up
+      create_table :tasks do |t|
+        t.belongs_to :worker
+        t.string     :sample
+        t.string     :block
+      end
+    end
+
+    def self.down
+      drop_table :tasks
+    end
+  end
+end

data/lib/ripe/version.rb

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+module Ripe
+  VERSION = "0.0.1"
+end

data/lib/ripe/worker.rb

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+require 'active_record'
+require 'fileutils'
+require_relative 'task'
+
+module Ripe
+  class Worker < ActiveRecord::Base
+    has_many :tasks, dependent: :destroy
+
+    def dir
+      ".ripe/workers/#{self.id}"
+    end
+
+    def sh
+      "#{self.dir}/job.sh"
+    end
+
+    def stdout
+      "#{self.dir}/job.stdout"
+    end
+
+    def stderr
+      "#{self.dir}/job.stderr"
+    end
+
+    after_create do
+      FileUtils.mkdir_p dir if !Dir.exists? dir
+    end
+
+    before_destroy do
+      FileUtils.rm_r dir if Dir.exists? dir
+    end
+
+    def self.prepare(samples, callback, vars = {})
+      vars = {
+        wd:        Dir.pwd,
+        mode:      :patch,
+        group_num: 1,
+      }.merge(vars)
+
+      return if ![:patch, :force, :depend].include? vars[:mode].to_sym
+
+      samples = samples.map do |sample|
+        block = callback.call(sample, vars).prune(vars[:mode].to_sym == :force,
+                                                  vars[:mode].to_sym == :depend)
+        if block != nil
+          puts "Preparing sample #{sample}"
+          [sample, block]
+        else
+          puts "Nothing to do for sample #{sample}"
+          nil
+        end
+      end
+      samples = samples.compact
+
+      samples.each_slice(vars[:group_num].to_i).map do |worker_samples|
+        worker = Worker.create(handle: vars[:handle])
+
+        blocks = worker_samples.map do |sample, block|
+          # Preorder traversal of blocks -- assign incremental numbers starting from
+          # 1 to each node as it is being traversed.
+          post_var_assign = lambda do |subblock|
+            if subblock.blocks.length == 0
+              task = worker.tasks.create({
+                sample: sample,
+                block:  subblock.id,
+              })
+              subblock.vars.merge!(log: task.log)
+            else
+              subblock.blocks.each(&post_var_assign)
+            end
+          end
+
+          post_var_assign.call(block)
+          block
+        end
+
+        vars = vars.merge({
+          name:    worker.id,
+          stdout:  worker.stdout,
+          stderr:  worker.stderr,
+          command: SerialBlock.new(*blocks).command,
+        })
+
+        file = File.new(worker.sh, 'w')
+        file.puts LiquidBlock.new("#{PATH}/share/moab.sh", vars).command
+        file.close
+
+        worker.update({
+          status:   :prepared,
+          ppn:      vars[:ppn],
+          queue:    vars[:queue],
+          walltime: vars[:walltime],
+        })
+        worker
+      end
+    end
+
+    def self.sync
+      lists = {idle: '-i', blocked: '-b', active:  '-r'}
+      lists = lists.map do |status, op|
+        showq = `showq -u $(whoami) #{op} | grep $(whoami)`.split("\n")
+        showq.map do |job|
+          {
+            moab_id:   job[/^([0-9]+) /, 1],
+            time:      job[/  ([0-9]{1,2}(\:[0-9]{2})+)  /, 1],
+            status:    status,
+          }
+        end
+      end
+
+      # Update status
+      lists = lists.inject(&:+).each do |job|
+        moab_id   = job[:moab_id]
+        time      = job[:time]
+        status    = job[:status]
+        worker    = Worker.find_by(moab_id: moab_id)
+
+        if worker
+          worker.update(time: time)
+          unless ['cancelled', status].include? worker.status
+            checkjob = `checkjob #{moab_id}`
+            worker.update({
+              host:      checkjob[/Allocated Nodes:\n\[(.*):[0-9]+\]\n/, 1],
+              status:    status, # Queued jobs that appear become either idle, blocked or active
+            })
+          end
+        end
+      end
+
+      # Mark workers that were previously in active, blocked or idle as completed
+      # if they cannot be found anymore.
+      jobs = lists.map { |job| job[:moab_id] }
+      Worker.where('status in (:statuses)',
+                   :statuses => ['active', 'idle', 'blocked']).each do |worker|
+        if jobs.include? worker.moab_id
+          jobs.delete(worker.moab_id) # Remove from list
+        elsif (worker.status != 'cancelled')
+          if File.exists? worker.stdout
+            stdout = File.new(worker.stdout).readlines.join 
+          else
+            stdout = ""
+          end
+          worker.update({
+            cpu_used:    stdout[/Resources:[ \t]*cput=([0-9]{1,2}(\:[0-9]{2})+),/, 1],
+            exit_code:   stdout[/Exit code:[ \t]*(.*)$/, 1],
+            host:        stdout[/Nodes:[ \t]*(.*)$/, 1],
+            memory_used: stdout[/Resources:.*,mem=([0-9]*[a-zA-Z]*),/, 1],
+            time:        stdout[/Resources:.*,walltime=([0-9]{1,2}(\:[0-9]{2})+)$/, 1],
+            status:      :completed,
+          })
+        end
+      end
+    end
+
+    def start!
+      raise "Worker #{id} could not be started: not prepared" unless self.status == 'prepared'
+      start
+    end
+
+    def start
+      update(status: :queueing, moab_id: `qsub '#{self.sh}'`.strip.split(/\./).first) # Send to queue first
+    end
+
+    def cancel!
+      raise "Worker #{id} could not be cancelled: not started" unless ['queueing', 'idle', 'blocked', 'active'].include? self.status
+      cancel
+    end
+
+    def cancel
+      `canceljob #{self.moab_id}`
+      update(status: :cancelled)
+    end
+  end
+end

data/lib/ripe/worker_migration.rb

@@ -0,0 +1,26 @@
+require 'active_record'
+require_relative 'task'
+
+module Ripe
+  class WorkerMigration < ActiveRecord::Migration
+    def self.up
+      create_table :workers do |t|
+        t.string  :cpu_used
+        t.string  :exit_code
+        t.string  :handle
+        t.string  :host
+        t.string  :moab_id
+        t.string  :memory_used
+        t.integer :ppn
+        t.string  :queue
+        t.string  :time
+        t.string  :status, default: :unprepared
+        t.string  :walltime
+      end
+    end
+
+    def self.down
+      drop_table :workers
+    end
+  end
+end

data/lib/ripe/working_block.rb

@@ -0,0 +1,41 @@
+require_relative 'block.rb'
+
+module Ripe
+  class WorkingBlock < Block
+    def initialize(filename, vars = {})
+      @filename = filename
+      super(File.basename(@filename), [], vars)
+    end
+
+    def topology
+      [@id]
+    end
+
+    def command
+      declarations = vars.map do |key, value|
+        lh = key.upcase
+        rh = value.is_a?(Array) ? "(\"#{value.join("\" \"")}\")" :
+          "\"#{value}\""
+        "#{lh}=#{rh}"
+      end
+
+      "\n# <#{id}>" +
+        ("\n" * 2) + declarations.join("\n") +
+        ("\n" * 2) + "exec 1>\"$LOG\" 2>&1" +
+        ("\n" * 2) + File.new(@filename).read + "\necho \"##.DONE.##\"" +
+        ("\n" * 2) + "# </#{id}>\n"
+    end
+
+    def prune(protect, depend)
+      targets_exist? && !protect ? nil : self
+    end
+
+    def targets_exist?
+      statuses = @vars.select { |key, _| !key[/^output_/].nil? }.values.flatten
+      targets_exist = statuses.map { |target| File.exists? target }.inject(:&)
+
+      # If there are no targets at all, then assume that all targets exist
+      targets_exist == nil ? true : targets_exist
+    end
+  end
+end

data/lib/ripe.rb

@@ -0,0 +1,6 @@
+require 'ripe/version'
+require 'ripe/controller'
+
+module Ripe
+  PATH = File.expand_path('..', File.dirname(__FILE__))
+end

data/ripe.gemspec

@@ -0,0 +1,35 @@
+# coding: utf-8
+lib = File.expand_path('../lib', __FILE__)
+$LOAD_PATH.unshift(lib) unless $LOAD_PATH.include?(lib)
+require 'ripe/version'
+
+Gem::Specification.new do |spec|
+  spec.name          = "ripe"
+  spec.version       = Ripe::VERSION
+  spec.authors       = ["Nicolas De Jay"]
+  spec.email         = ["ndj@pinkfilter.org"]
+  spec.summary       = %q{Abstraction layer between the MOAB/Torque stack and your pipeline.}
+  # spec.description   = %q{Write a longer description. Optional.}
+  spec.homepage      = "https://github.com/ndejay/ripe"
+  spec.license       = "MIT"
+
+  spec.files         = `git ls-files -z`.split("\x0")
+  spec.executables   = spec.files.grep(%r{^bin/}) { |f| File.basename(f) }
+  spec.test_files    = spec.files.grep(%r{^(test|spec|features)/})
+  spec.require_paths = ["lib"]
+
+  spec.add_development_dependency "bundler", "~> 1.7"
+  spec.add_development_dependency "rake", "~> 10.0"
+
+  spec.add_development_dependency "activerecord"
+  spec.add_development_dependency "fileutils"
+  spec.add_development_dependency "liquid"
+  spec.add_development_dependency "sqlite3"
+  spec.add_development_dependency "hirb"
+  spec.add_development_dependency "irbtools"
+  spec.add_development_dependency "thor"
+  spec.add_development_dependency "wirb"
+
+  spec.add_development_dependency "rspec"
+  spec.add_development_dependency "rspec-nc"
+end

data/share/moab.sh

@@ -0,0 +1,14 @@
+#!/usr/bin/env bash
+
+#PBS -N {{ name }}
+#PBS -A {{ project_name }}
+#PBS -q {{ queue }}
+#PBS -l nodes={{ node_count }}:ppn={{ ppn }}
+#PBS -l walltime={{ walltime }}
+#PBS -o {{ stdout }}
+#PBS -e {{ stderr }}
+#PBS -V
+
+cd "{{ wd }}"
+
+{{ command }}

data/spec/ripe_spec.rb

@@ -0,0 +1,7 @@
+require 'spec_helper'
+
+describe Ripe do
+  it 'does stuff' do
+    true
+  end
+end

data/spec/spec_helper.rb

@@ -0,0 +1 @@
+require 'ripe'

metadata

@@ -0,0 +1,239 @@
+--- !ruby/object:Gem::Specification
+name: ripe
+version: !ruby/object:Gem::Version
+  version: 0.0.1
+platform: ruby
+authors:
+- Nicolas De Jay
+autorequire: 
+bindir: bin
+cert_chain: []
+date: 2015-03-19 00:00:00.000000000 Z
+dependencies:
+- !ruby/object:Gem::Dependency
+  name: bundler
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '1.7'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '1.7'
+- !ruby/object:Gem::Dependency
+  name: rake
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '10.0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '10.0'
+- !ruby/object:Gem::Dependency
+  name: activerecord
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+- !ruby/object:Gem::Dependency
+  name: fileutils
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+- !ruby/object:Gem::Dependency
+  name: liquid
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+- !ruby/object:Gem::Dependency
+  name: sqlite3
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+- !ruby/object:Gem::Dependency
+  name: hirb
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+- !ruby/object:Gem::Dependency
+  name: irbtools
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+- !ruby/object:Gem::Dependency
+  name: thor
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+- !ruby/object:Gem::Dependency
+  name: wirb
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+- !ruby/object:Gem::Dependency
+  name: rspec
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+- !ruby/object:Gem::Dependency
+  name: rspec-nc
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+description: 
+email:
+- ndj@pinkfilter.org
+executables:
+- ripe
+extensions: []
+extra_rdoc_files: []
+files:
+- ".gitignore"
+- ".travis.yml"
+- Gemfile
+- LICENSE.txt
+- README.md
+- Rakefile
+- bin/ripe
+- lib/ripe.rb
+- lib/ripe/block.rb
+- lib/ripe/controller.rb
+- lib/ripe/liquid_block.rb
+- lib/ripe/multi_block.rb
+- lib/ripe/parallel_block.rb
+- lib/ripe/serial_block.rb
+- lib/ripe/task.rb
+- lib/ripe/task_migration.rb
+- lib/ripe/version.rb
+- lib/ripe/worker.rb
+- lib/ripe/worker_migration.rb
+- lib/ripe/working_block.rb
+- ripe.gemspec
+- share/moab.sh
+- spec/ripe_spec.rb
+- spec/spec_helper.rb
+homepage: https://github.com/ndejay/ripe
+licenses:
+- MIT
+metadata: {}
+post_install_message: 
+rdoc_options: []
+require_paths:
+- lib
+required_ruby_version: !ruby/object:Gem::Requirement
+  requirements:
+  - - ">="
+    - !ruby/object:Gem::Version
+      version: '0'
+required_rubygems_version: !ruby/object:Gem::Requirement
+  requirements:
+  - - ">="
+    - !ruby/object:Gem::Version
+      version: '0'
+requirements: []
+rubyforge_project: 
+rubygems_version: 2.2.2
+signing_key: 
+specification_version: 4
+summary: Abstraction layer between the MOAB/Torque stack and your pipeline.
+test_files:
+- spec/ripe_spec.rb
+- spec/spec_helper.rb