ripe 0.0.1
Sign up to get free protection for your applications and to get access to all the features.
- checksums.yaml +7 -0
- data/.gitignore +15 -0
- data/.travis.yml +17 -0
- data/Gemfile +4 -0
- data/LICENSE.txt +22 -0
- data/README.md +41 -0
- data/Rakefile +11 -0
- data/bin/ripe +62 -0
- data/lib/ripe/block.rb +41 -0
- data/lib/ripe/controller.rb +51 -0
- data/lib/ripe/liquid_block.rb +17 -0
- data/lib/ripe/multi_block.rb +35 -0
- data/lib/ripe/parallel_block.rb +13 -0
- data/lib/ripe/serial_block.rb +37 -0
- data/lib/ripe/task.rb +17 -0
- data/lib/ripe/task_migration.rb +18 -0
- data/lib/ripe/version.rb +3 -0
- data/lib/ripe/worker.rb +174 -0
- data/lib/ripe/worker_migration.rb +26 -0
- data/lib/ripe/working_block.rb +41 -0
- data/lib/ripe.rb +6 -0
- data/ripe.gemspec +35 -0
- data/share/moab.sh +14 -0
- data/spec/ripe_spec.rb +7 -0
- data/spec/spec_helper.rb +1 -0
- metadata +239 -0
checksums.yaml
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---
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SHA1:
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metadata.gz: f0ae395af344b3bc8349fbd1e028a80be84bbd77
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data.tar.gz: 067f49928266b15f63c2cd021a162f14678be86d
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SHA512:
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metadata.gz: 6778dfe639d44a022296592ad693da8f7bcdc30dca8506fb26d0ab75533bc5fbc17fba738cc0c13c765191695883abc7b501b1a2aca1b4a9350e6aa2db8dd834
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data.tar.gz: 1efa8def1b83a718604001fd7cc875f6ec28919813485a5006b4db340dfd8dc9697d08c799b06b17733c17908f542b5fbdbf6dcbf8e4cd14b39ac1a51b0af9b0
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data/.gitignore
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data/.travis.yml
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data/Gemfile
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data/LICENSE.txt
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Copyright (c) 2013-2015 Nicolas De Jay
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MIT License
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Permission is hereby granted, free of charge, to any person obtaining
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a copy of this software and associated documentation files (the
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"Software"), to deal in the Software without restriction, including
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without limitation the rights to use, copy, modify, merge, publish,
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distribute, sublicense, and/or sell copies of the Software, and to
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permit persons to whom the Software is furnished to do so, subject to
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the following conditions:
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The above copyright notice and this permission notice shall be
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included in all copies or substantial portions of the Software.
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THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
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EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
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MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
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NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE
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LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION
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OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION
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WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
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data/README.md
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# Ripe
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[![Build Status](https://travis-ci.org/ndejay/ripe.svg)](https://travis-ci.org/ndejay/ripe)
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ripe is an abstraction layer between the MOAB/Torque stack and your pipeline.
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With ripe, you can easily collate tasks into workflows which can then be
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applied to samples without the headache of manually dealing with the queuing
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system.
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Notes:
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- MOAB is a scheduler -- it takes care of priorities and allocations.
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- Torque is a resource manager -- it launches the jobs on the nodes.
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## Installation
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Add this line to your application's Gemfile:
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```ruby
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gem 'ripe', :git => 'git://github.com/ndejay/ripe.git'
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```
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And then execute:
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$ bundle
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Or install it yourself as:
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$ gem install ripe
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## Usage
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TODO: Write usage instructions here
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## Contributing
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1. Fork it ( https://github.com/ndejay/ripe/fork )
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2. Create your feature branch (`git checkout -b my-new-feature`)
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3. Commit your changes (`git commit -am 'Add some feature'`)
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4. Push to the branch (`git push origin my-new-feature`)
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5. Create a new Pull Request
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data/Rakefile
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require 'rspec/core/rake_task'
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require 'bundler/gem_tasks'
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# Default directory to look in is `/specs`
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# Run with `rake spec`
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RSpec::Core::RakeTask.new(:spec) do |task|
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# task.rspec_opts = ['--color', '--format', 'nested']
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end
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task :default => :spec
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data/bin/ripe
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#!/usr/bin/env ruby
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require 'ripe'
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require 'thor'
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include Ripe
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# Look for workflows and blocks in ./.ripe wherever invoked, then in
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# directories specified in the $RIPELIB environment variable.
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$RIPELIBS = "#{ENV['PWD']}/.ripe:#{ENV['RIPELIB']}".split(/:/)
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def Task(handle, vars = {})
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WorkingBlock.new($RIPELIBS.map{ |path| "#{path}/tasks/#{handle}.sh" }.select{ |path| File.exists? path }.first, vars)
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end
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class CLI < Thor
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desc 'console', 'Enter ripe console'
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def console
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require 'irb'
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require 'irbtools'
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ARGV.clear # This is necessary because otherwise all arguments
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# get sent to IRB
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$ripe = Controller.new
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$ripe.attach
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IRB.start "ripe #{Ripe::VERSION}"
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end
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desc 'prepare SAMPLES', 'Prepare jobs from template workflow'
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option :workflow, :aliases => '-w', :type => :string, :required => true,
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:desc => 'Workflow to be applied'
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option :options, :aliases => '-o', :type => :string, :required => false,
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:desc => 'Options', :default => ''
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def prepare(*samples)
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return if (samples.length == 0)
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additional_vars = options[:options].split(/,/).map do |pair|
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key, value = pair.split(/=/)
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{ key.to_sym => value }
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end
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additional_vars = additional_vars.inject(&:merge) || {}
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# Expect $callback to be a lambda function that takes one argument (sample)
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# and returns a Block, and $vars to be a dictionary mapping arguments to
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# values (i.e. resource allocation)
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workflows = $RIPELIBS.map{ |path| "#{path}/workflows/#{options[:workflow]}.rb" }
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require_relative workflows.select{ |path| File.exists? path }.first
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$ripe = Controller.new
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$ripe.attach_or_create # Create .ripe if it doesn't exist
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$ripe.prepare(samples, $callback, $vars.merge(additional_vars))
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end
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desc 'version', 'Retrieve ripe version'
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def version
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puts "ripe version #{Ripe::VERSION}"
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end
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end
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CLI.start(ARGV)
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data/lib/ripe/block.rb
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require_relative 'parallel_block'
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require_relative 'serial_block'
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module Ripe
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class Block
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attr_reader :id, :blocks
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attr_accessor :vars
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def initialize(id, blocks = [], vars = {})
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@id, @blocks, @vars = id, blocks, vars
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end
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def prune(protect, depend)
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self
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end
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# Syntactic sugar of the form: Block1 | Block2 | Block3
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def |(block)
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ParallelBlock.new(self, block)
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end
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# Syntactic sugar of the form: Block1 + Block2 + Block3
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def +(block)
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SerialBlock.new(self, block)
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end
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end
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end
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class NilClass
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# Syntactic sugar of the form: nil | Block1
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def |(block)
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raise NoMethodError unless Block > block.class
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block
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end
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# Syntactic sugar of the form: nil + Block1
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def +(block)
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raise NoMethodError unless Block > block.class
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block
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end
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end
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require 'active_record'
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require 'fileutils'
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require_relative 'block'
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require_relative 'worker'
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require_relative 'worker_migration'
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require_relative 'working_block'
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require_relative 'liquid_block'
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require_relative 'task'
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require_relative 'task_migration'
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module Ripe
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class Controller
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def initialize
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@repository_path = '.ripe'
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@has_repository = Dir.exists? @repository_path
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end
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def attach
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ActiveRecord::Base.establish_connection({
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adapter: 'sqlite3',
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database: "#{@repository_path}/meta.db"
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})
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end
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def attach_or_create
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@has_repository ? attach : create
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end
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def create
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FileUtils.mkdir_p(@repository_path)
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@has_repository = true
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begin
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attach
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WorkerMigration.up
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TaskMigration.up
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rescue
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destroy
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end
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end
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def destroy
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FileUtils.rm("#{@repository_path}/meta.db") if File.exists? "#{@repository_path}/meta.db"
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FileUtils.rm("#{@repository_path}/workers") if Dir.exists? "#{@repository_path}/workers"
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end
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def prepare(samples, callback, vars = {})
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Worker.prepare(samples, callback, vars)
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end
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end
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end
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require 'liquid'
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require_relative 'working_block'
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module Ripe
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class LiquidBlock < WorkingBlock
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def initialize(filename, vars = {})
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super(filename, vars)
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end
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def command
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vars = @vars.inject({}) { |memo, (k, v)| memo[k.to_s] = v; memo }
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template = Liquid::Template.parse(File.new(@filename).read)
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template.render(vars)
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end
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end
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end
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require_relative 'block'
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module Ripe
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# Forward declaration to prevent cyclic dependencies
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class Block; end
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class MultiBlock < Block
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def initialize(id, *blocks)
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# Ignore nil objects
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super(id, blocks.compact, {})
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end
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def prune(protect, depend)
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return self if protect
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@blocks = @blocks.map { |block| block.prune(protect, depend) }.compact
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case @blocks.length
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when 0
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nil
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when 1
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@blocks.first
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else
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self
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end
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end
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def topology
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[@id] + @blocks.map(&:topology)
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end
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def targets_exist?
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@blocks.map(&:targets_exist?).inject(:&)
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end
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end
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end
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require_relative 'multi_block'
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module Ripe
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class SerialBlock < MultiBlock
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def initialize(*blocks)
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super(:+, *blocks)
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end
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def command
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@blocks.map { |block| "(\n%s\n)" % block.command }.join(' ; ')
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end
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alias :super_prune :prune
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def prune(protect, depend)
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return super_prune(protect, depend) if !depend
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return self if protect
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+
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@blocks = @blocks.map do |block|
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new_protect = !block.targets_exist?
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new_block = block.prune(protect, depend)
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protect = new_protect
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new_block
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end
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@blocks = @blocks.compact
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+
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case @blocks.length
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when 0
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nil
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when 1
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@blocks.first
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else
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self
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end
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end
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end
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end
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data/lib/ripe/task.rb
ADDED
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1
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require 'active_record'
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require 'fileutils'
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require_relative 'worker'
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module Ripe
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class Task < ActiveRecord::Base
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belongs_to :worker
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def dir
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"#{self.worker.dir}"
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end
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+
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def log
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"#{self.dir}/#{self.id}.log"
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end
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end
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end
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require 'active_record'
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2
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require_relative 'worker'
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+
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4
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module Ripe
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5
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class TaskMigration < ActiveRecord::Migration
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def self.up
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create_table :tasks do |t|
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t.belongs_to :worker
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t.string :sample
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t.string :block
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end
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end
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+
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def self.down
|
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drop_table :tasks
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+
end
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end
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end
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data/lib/ripe/version.rb
ADDED
data/lib/ripe/worker.rb
ADDED
@@ -0,0 +1,174 @@
|
|
1
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+
require 'active_record'
|
2
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+
require 'fileutils'
|
3
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+
require_relative 'task'
|
4
|
+
|
5
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module Ripe
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6
|
+
class Worker < ActiveRecord::Base
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7
|
+
has_many :tasks, dependent: :destroy
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8
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+
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|
+
def dir
|
10
|
+
".ripe/workers/#{self.id}"
|
11
|
+
end
|
12
|
+
|
13
|
+
def sh
|
14
|
+
"#{self.dir}/job.sh"
|
15
|
+
end
|
16
|
+
|
17
|
+
def stdout
|
18
|
+
"#{self.dir}/job.stdout"
|
19
|
+
end
|
20
|
+
|
21
|
+
def stderr
|
22
|
+
"#{self.dir}/job.stderr"
|
23
|
+
end
|
24
|
+
|
25
|
+
after_create do
|
26
|
+
FileUtils.mkdir_p dir if !Dir.exists? dir
|
27
|
+
end
|
28
|
+
|
29
|
+
before_destroy do
|
30
|
+
FileUtils.rm_r dir if Dir.exists? dir
|
31
|
+
end
|
32
|
+
|
33
|
+
def self.prepare(samples, callback, vars = {})
|
34
|
+
vars = {
|
35
|
+
wd: Dir.pwd,
|
36
|
+
mode: :patch,
|
37
|
+
group_num: 1,
|
38
|
+
}.merge(vars)
|
39
|
+
|
40
|
+
return if ![:patch, :force, :depend].include? vars[:mode].to_sym
|
41
|
+
|
42
|
+
samples = samples.map do |sample|
|
43
|
+
block = callback.call(sample, vars).prune(vars[:mode].to_sym == :force,
|
44
|
+
vars[:mode].to_sym == :depend)
|
45
|
+
if block != nil
|
46
|
+
puts "Preparing sample #{sample}"
|
47
|
+
[sample, block]
|
48
|
+
else
|
49
|
+
puts "Nothing to do for sample #{sample}"
|
50
|
+
nil
|
51
|
+
end
|
52
|
+
end
|
53
|
+
samples = samples.compact
|
54
|
+
|
55
|
+
samples.each_slice(vars[:group_num].to_i).map do |worker_samples|
|
56
|
+
worker = Worker.create(handle: vars[:handle])
|
57
|
+
|
58
|
+
blocks = worker_samples.map do |sample, block|
|
59
|
+
# Preorder traversal of blocks -- assign incremental numbers starting from
|
60
|
+
# 1 to each node as it is being traversed.
|
61
|
+
post_var_assign = lambda do |subblock|
|
62
|
+
if subblock.blocks.length == 0
|
63
|
+
task = worker.tasks.create({
|
64
|
+
sample: sample,
|
65
|
+
block: subblock.id,
|
66
|
+
})
|
67
|
+
subblock.vars.merge!(log: task.log)
|
68
|
+
else
|
69
|
+
subblock.blocks.each(&post_var_assign)
|
70
|
+
end
|
71
|
+
end
|
72
|
+
|
73
|
+
post_var_assign.call(block)
|
74
|
+
block
|
75
|
+
end
|
76
|
+
|
77
|
+
vars = vars.merge({
|
78
|
+
name: worker.id,
|
79
|
+
stdout: worker.stdout,
|
80
|
+
stderr: worker.stderr,
|
81
|
+
command: SerialBlock.new(*blocks).command,
|
82
|
+
})
|
83
|
+
|
84
|
+
file = File.new(worker.sh, 'w')
|
85
|
+
file.puts LiquidBlock.new("#{PATH}/share/moab.sh", vars).command
|
86
|
+
file.close
|
87
|
+
|
88
|
+
worker.update({
|
89
|
+
status: :prepared,
|
90
|
+
ppn: vars[:ppn],
|
91
|
+
queue: vars[:queue],
|
92
|
+
walltime: vars[:walltime],
|
93
|
+
})
|
94
|
+
worker
|
95
|
+
end
|
96
|
+
end
|
97
|
+
|
98
|
+
def self.sync
|
99
|
+
lists = {idle: '-i', blocked: '-b', active: '-r'}
|
100
|
+
lists = lists.map do |status, op|
|
101
|
+
showq = `showq -u $(whoami) #{op} | grep $(whoami)`.split("\n")
|
102
|
+
showq.map do |job|
|
103
|
+
{
|
104
|
+
moab_id: job[/^([0-9]+) /, 1],
|
105
|
+
time: job[/ ([0-9]{1,2}(\:[0-9]{2})+) /, 1],
|
106
|
+
status: status,
|
107
|
+
}
|
108
|
+
end
|
109
|
+
end
|
110
|
+
|
111
|
+
# Update status
|
112
|
+
lists = lists.inject(&:+).each do |job|
|
113
|
+
moab_id = job[:moab_id]
|
114
|
+
time = job[:time]
|
115
|
+
status = job[:status]
|
116
|
+
worker = Worker.find_by(moab_id: moab_id)
|
117
|
+
|
118
|
+
if worker
|
119
|
+
worker.update(time: time)
|
120
|
+
unless ['cancelled', status].include? worker.status
|
121
|
+
checkjob = `checkjob #{moab_id}`
|
122
|
+
worker.update({
|
123
|
+
host: checkjob[/Allocated Nodes:\n\[(.*):[0-9]+\]\n/, 1],
|
124
|
+
status: status, # Queued jobs that appear become either idle, blocked or active
|
125
|
+
})
|
126
|
+
end
|
127
|
+
end
|
128
|
+
end
|
129
|
+
|
130
|
+
# Mark workers that were previously in active, blocked or idle as completed
|
131
|
+
# if they cannot be found anymore.
|
132
|
+
jobs = lists.map { |job| job[:moab_id] }
|
133
|
+
Worker.where('status in (:statuses)',
|
134
|
+
:statuses => ['active', 'idle', 'blocked']).each do |worker|
|
135
|
+
if jobs.include? worker.moab_id
|
136
|
+
jobs.delete(worker.moab_id) # Remove from list
|
137
|
+
elsif (worker.status != 'cancelled')
|
138
|
+
if File.exists? worker.stdout
|
139
|
+
stdout = File.new(worker.stdout).readlines.join
|
140
|
+
else
|
141
|
+
stdout = ""
|
142
|
+
end
|
143
|
+
worker.update({
|
144
|
+
cpu_used: stdout[/Resources:[ \t]*cput=([0-9]{1,2}(\:[0-9]{2})+),/, 1],
|
145
|
+
exit_code: stdout[/Exit code:[ \t]*(.*)$/, 1],
|
146
|
+
host: stdout[/Nodes:[ \t]*(.*)$/, 1],
|
147
|
+
memory_used: stdout[/Resources:.*,mem=([0-9]*[a-zA-Z]*),/, 1],
|
148
|
+
time: stdout[/Resources:.*,walltime=([0-9]{1,2}(\:[0-9]{2})+)$/, 1],
|
149
|
+
status: :completed,
|
150
|
+
})
|
151
|
+
end
|
152
|
+
end
|
153
|
+
end
|
154
|
+
|
155
|
+
def start!
|
156
|
+
raise "Worker #{id} could not be started: not prepared" unless self.status == 'prepared'
|
157
|
+
start
|
158
|
+
end
|
159
|
+
|
160
|
+
def start
|
161
|
+
update(status: :queueing, moab_id: `qsub '#{self.sh}'`.strip.split(/\./).first) # Send to queue first
|
162
|
+
end
|
163
|
+
|
164
|
+
def cancel!
|
165
|
+
raise "Worker #{id} could not be cancelled: not started" unless ['queueing', 'idle', 'blocked', 'active'].include? self.status
|
166
|
+
cancel
|
167
|
+
end
|
168
|
+
|
169
|
+
def cancel
|
170
|
+
`canceljob #{self.moab_id}`
|
171
|
+
update(status: :cancelled)
|
172
|
+
end
|
173
|
+
end
|
174
|
+
end
|
@@ -0,0 +1,26 @@
|
|
1
|
+
require 'active_record'
|
2
|
+
require_relative 'task'
|
3
|
+
|
4
|
+
module Ripe
|
5
|
+
class WorkerMigration < ActiveRecord::Migration
|
6
|
+
def self.up
|
7
|
+
create_table :workers do |t|
|
8
|
+
t.string :cpu_used
|
9
|
+
t.string :exit_code
|
10
|
+
t.string :handle
|
11
|
+
t.string :host
|
12
|
+
t.string :moab_id
|
13
|
+
t.string :memory_used
|
14
|
+
t.integer :ppn
|
15
|
+
t.string :queue
|
16
|
+
t.string :time
|
17
|
+
t.string :status, default: :unprepared
|
18
|
+
t.string :walltime
|
19
|
+
end
|
20
|
+
end
|
21
|
+
|
22
|
+
def self.down
|
23
|
+
drop_table :workers
|
24
|
+
end
|
25
|
+
end
|
26
|
+
end
|
@@ -0,0 +1,41 @@
|
|
1
|
+
require_relative 'block.rb'
|
2
|
+
|
3
|
+
module Ripe
|
4
|
+
class WorkingBlock < Block
|
5
|
+
def initialize(filename, vars = {})
|
6
|
+
@filename = filename
|
7
|
+
super(File.basename(@filename), [], vars)
|
8
|
+
end
|
9
|
+
|
10
|
+
def topology
|
11
|
+
[@id]
|
12
|
+
end
|
13
|
+
|
14
|
+
def command
|
15
|
+
declarations = vars.map do |key, value|
|
16
|
+
lh = key.upcase
|
17
|
+
rh = value.is_a?(Array) ? "(\"#{value.join("\" \"")}\")" :
|
18
|
+
"\"#{value}\""
|
19
|
+
"#{lh}=#{rh}"
|
20
|
+
end
|
21
|
+
|
22
|
+
"\n# <#{id}>" +
|
23
|
+
("\n" * 2) + declarations.join("\n") +
|
24
|
+
("\n" * 2) + "exec 1>\"$LOG\" 2>&1" +
|
25
|
+
("\n" * 2) + File.new(@filename).read + "\necho \"##.DONE.##\"" +
|
26
|
+
("\n" * 2) + "# </#{id}>\n"
|
27
|
+
end
|
28
|
+
|
29
|
+
def prune(protect, depend)
|
30
|
+
targets_exist? && !protect ? nil : self
|
31
|
+
end
|
32
|
+
|
33
|
+
def targets_exist?
|
34
|
+
statuses = @vars.select { |key, _| !key[/^output_/].nil? }.values.flatten
|
35
|
+
targets_exist = statuses.map { |target| File.exists? target }.inject(:&)
|
36
|
+
|
37
|
+
# If there are no targets at all, then assume that all targets exist
|
38
|
+
targets_exist == nil ? true : targets_exist
|
39
|
+
end
|
40
|
+
end
|
41
|
+
end
|
data/lib/ripe.rb
ADDED
data/ripe.gemspec
ADDED
@@ -0,0 +1,35 @@
|
|
1
|
+
# coding: utf-8
|
2
|
+
lib = File.expand_path('../lib', __FILE__)
|
3
|
+
$LOAD_PATH.unshift(lib) unless $LOAD_PATH.include?(lib)
|
4
|
+
require 'ripe/version'
|
5
|
+
|
6
|
+
Gem::Specification.new do |spec|
|
7
|
+
spec.name = "ripe"
|
8
|
+
spec.version = Ripe::VERSION
|
9
|
+
spec.authors = ["Nicolas De Jay"]
|
10
|
+
spec.email = ["ndj@pinkfilter.org"]
|
11
|
+
spec.summary = %q{Abstraction layer between the MOAB/Torque stack and your pipeline.}
|
12
|
+
# spec.description = %q{Write a longer description. Optional.}
|
13
|
+
spec.homepage = "https://github.com/ndejay/ripe"
|
14
|
+
spec.license = "MIT"
|
15
|
+
|
16
|
+
spec.files = `git ls-files -z`.split("\x0")
|
17
|
+
spec.executables = spec.files.grep(%r{^bin/}) { |f| File.basename(f) }
|
18
|
+
spec.test_files = spec.files.grep(%r{^(test|spec|features)/})
|
19
|
+
spec.require_paths = ["lib"]
|
20
|
+
|
21
|
+
spec.add_development_dependency "bundler", "~> 1.7"
|
22
|
+
spec.add_development_dependency "rake", "~> 10.0"
|
23
|
+
|
24
|
+
spec.add_development_dependency "activerecord"
|
25
|
+
spec.add_development_dependency "fileutils"
|
26
|
+
spec.add_development_dependency "liquid"
|
27
|
+
spec.add_development_dependency "sqlite3"
|
28
|
+
spec.add_development_dependency "hirb"
|
29
|
+
spec.add_development_dependency "irbtools"
|
30
|
+
spec.add_development_dependency "thor"
|
31
|
+
spec.add_development_dependency "wirb"
|
32
|
+
|
33
|
+
spec.add_development_dependency "rspec"
|
34
|
+
spec.add_development_dependency "rspec-nc"
|
35
|
+
end
|
data/share/moab.sh
ADDED
@@ -0,0 +1,14 @@
|
|
1
|
+
#!/usr/bin/env bash
|
2
|
+
|
3
|
+
#PBS -N {{ name }}
|
4
|
+
#PBS -A {{ project_name }}
|
5
|
+
#PBS -q {{ queue }}
|
6
|
+
#PBS -l nodes={{ node_count }}:ppn={{ ppn }}
|
7
|
+
#PBS -l walltime={{ walltime }}
|
8
|
+
#PBS -o {{ stdout }}
|
9
|
+
#PBS -e {{ stderr }}
|
10
|
+
#PBS -V
|
11
|
+
|
12
|
+
cd "{{ wd }}"
|
13
|
+
|
14
|
+
{{ command }}
|
data/spec/ripe_spec.rb
ADDED
data/spec/spec_helper.rb
ADDED
@@ -0,0 +1 @@
|
|
1
|
+
require 'ripe'
|
metadata
ADDED
@@ -0,0 +1,239 @@
|
|
1
|
+
--- !ruby/object:Gem::Specification
|
2
|
+
name: ripe
|
3
|
+
version: !ruby/object:Gem::Version
|
4
|
+
version: 0.0.1
|
5
|
+
platform: ruby
|
6
|
+
authors:
|
7
|
+
- Nicolas De Jay
|
8
|
+
autorequire:
|
9
|
+
bindir: bin
|
10
|
+
cert_chain: []
|
11
|
+
date: 2015-03-19 00:00:00.000000000 Z
|
12
|
+
dependencies:
|
13
|
+
- !ruby/object:Gem::Dependency
|
14
|
+
name: bundler
|
15
|
+
requirement: !ruby/object:Gem::Requirement
|
16
|
+
requirements:
|
17
|
+
- - "~>"
|
18
|
+
- !ruby/object:Gem::Version
|
19
|
+
version: '1.7'
|
20
|
+
type: :development
|
21
|
+
prerelease: false
|
22
|
+
version_requirements: !ruby/object:Gem::Requirement
|
23
|
+
requirements:
|
24
|
+
- - "~>"
|
25
|
+
- !ruby/object:Gem::Version
|
26
|
+
version: '1.7'
|
27
|
+
- !ruby/object:Gem::Dependency
|
28
|
+
name: rake
|
29
|
+
requirement: !ruby/object:Gem::Requirement
|
30
|
+
requirements:
|
31
|
+
- - "~>"
|
32
|
+
- !ruby/object:Gem::Version
|
33
|
+
version: '10.0'
|
34
|
+
type: :development
|
35
|
+
prerelease: false
|
36
|
+
version_requirements: !ruby/object:Gem::Requirement
|
37
|
+
requirements:
|
38
|
+
- - "~>"
|
39
|
+
- !ruby/object:Gem::Version
|
40
|
+
version: '10.0'
|
41
|
+
- !ruby/object:Gem::Dependency
|
42
|
+
name: activerecord
|
43
|
+
requirement: !ruby/object:Gem::Requirement
|
44
|
+
requirements:
|
45
|
+
- - ">="
|
46
|
+
- !ruby/object:Gem::Version
|
47
|
+
version: '0'
|
48
|
+
type: :development
|
49
|
+
prerelease: false
|
50
|
+
version_requirements: !ruby/object:Gem::Requirement
|
51
|
+
requirements:
|
52
|
+
- - ">="
|
53
|
+
- !ruby/object:Gem::Version
|
54
|
+
version: '0'
|
55
|
+
- !ruby/object:Gem::Dependency
|
56
|
+
name: fileutils
|
57
|
+
requirement: !ruby/object:Gem::Requirement
|
58
|
+
requirements:
|
59
|
+
- - ">="
|
60
|
+
- !ruby/object:Gem::Version
|
61
|
+
version: '0'
|
62
|
+
type: :development
|
63
|
+
prerelease: false
|
64
|
+
version_requirements: !ruby/object:Gem::Requirement
|
65
|
+
requirements:
|
66
|
+
- - ">="
|
67
|
+
- !ruby/object:Gem::Version
|
68
|
+
version: '0'
|
69
|
+
- !ruby/object:Gem::Dependency
|
70
|
+
name: liquid
|
71
|
+
requirement: !ruby/object:Gem::Requirement
|
72
|
+
requirements:
|
73
|
+
- - ">="
|
74
|
+
- !ruby/object:Gem::Version
|
75
|
+
version: '0'
|
76
|
+
type: :development
|
77
|
+
prerelease: false
|
78
|
+
version_requirements: !ruby/object:Gem::Requirement
|
79
|
+
requirements:
|
80
|
+
- - ">="
|
81
|
+
- !ruby/object:Gem::Version
|
82
|
+
version: '0'
|
83
|
+
- !ruby/object:Gem::Dependency
|
84
|
+
name: sqlite3
|
85
|
+
requirement: !ruby/object:Gem::Requirement
|
86
|
+
requirements:
|
87
|
+
- - ">="
|
88
|
+
- !ruby/object:Gem::Version
|
89
|
+
version: '0'
|
90
|
+
type: :development
|
91
|
+
prerelease: false
|
92
|
+
version_requirements: !ruby/object:Gem::Requirement
|
93
|
+
requirements:
|
94
|
+
- - ">="
|
95
|
+
- !ruby/object:Gem::Version
|
96
|
+
version: '0'
|
97
|
+
- !ruby/object:Gem::Dependency
|
98
|
+
name: hirb
|
99
|
+
requirement: !ruby/object:Gem::Requirement
|
100
|
+
requirements:
|
101
|
+
- - ">="
|
102
|
+
- !ruby/object:Gem::Version
|
103
|
+
version: '0'
|
104
|
+
type: :development
|
105
|
+
prerelease: false
|
106
|
+
version_requirements: !ruby/object:Gem::Requirement
|
107
|
+
requirements:
|
108
|
+
- - ">="
|
109
|
+
- !ruby/object:Gem::Version
|
110
|
+
version: '0'
|
111
|
+
- !ruby/object:Gem::Dependency
|
112
|
+
name: irbtools
|
113
|
+
requirement: !ruby/object:Gem::Requirement
|
114
|
+
requirements:
|
115
|
+
- - ">="
|
116
|
+
- !ruby/object:Gem::Version
|
117
|
+
version: '0'
|
118
|
+
type: :development
|
119
|
+
prerelease: false
|
120
|
+
version_requirements: !ruby/object:Gem::Requirement
|
121
|
+
requirements:
|
122
|
+
- - ">="
|
123
|
+
- !ruby/object:Gem::Version
|
124
|
+
version: '0'
|
125
|
+
- !ruby/object:Gem::Dependency
|
126
|
+
name: thor
|
127
|
+
requirement: !ruby/object:Gem::Requirement
|
128
|
+
requirements:
|
129
|
+
- - ">="
|
130
|
+
- !ruby/object:Gem::Version
|
131
|
+
version: '0'
|
132
|
+
type: :development
|
133
|
+
prerelease: false
|
134
|
+
version_requirements: !ruby/object:Gem::Requirement
|
135
|
+
requirements:
|
136
|
+
- - ">="
|
137
|
+
- !ruby/object:Gem::Version
|
138
|
+
version: '0'
|
139
|
+
- !ruby/object:Gem::Dependency
|
140
|
+
name: wirb
|
141
|
+
requirement: !ruby/object:Gem::Requirement
|
142
|
+
requirements:
|
143
|
+
- - ">="
|
144
|
+
- !ruby/object:Gem::Version
|
145
|
+
version: '0'
|
146
|
+
type: :development
|
147
|
+
prerelease: false
|
148
|
+
version_requirements: !ruby/object:Gem::Requirement
|
149
|
+
requirements:
|
150
|
+
- - ">="
|
151
|
+
- !ruby/object:Gem::Version
|
152
|
+
version: '0'
|
153
|
+
- !ruby/object:Gem::Dependency
|
154
|
+
name: rspec
|
155
|
+
requirement: !ruby/object:Gem::Requirement
|
156
|
+
requirements:
|
157
|
+
- - ">="
|
158
|
+
- !ruby/object:Gem::Version
|
159
|
+
version: '0'
|
160
|
+
type: :development
|
161
|
+
prerelease: false
|
162
|
+
version_requirements: !ruby/object:Gem::Requirement
|
163
|
+
requirements:
|
164
|
+
- - ">="
|
165
|
+
- !ruby/object:Gem::Version
|
166
|
+
version: '0'
|
167
|
+
- !ruby/object:Gem::Dependency
|
168
|
+
name: rspec-nc
|
169
|
+
requirement: !ruby/object:Gem::Requirement
|
170
|
+
requirements:
|
171
|
+
- - ">="
|
172
|
+
- !ruby/object:Gem::Version
|
173
|
+
version: '0'
|
174
|
+
type: :development
|
175
|
+
prerelease: false
|
176
|
+
version_requirements: !ruby/object:Gem::Requirement
|
177
|
+
requirements:
|
178
|
+
- - ">="
|
179
|
+
- !ruby/object:Gem::Version
|
180
|
+
version: '0'
|
181
|
+
description:
|
182
|
+
email:
|
183
|
+
- ndj@pinkfilter.org
|
184
|
+
executables:
|
185
|
+
- ripe
|
186
|
+
extensions: []
|
187
|
+
extra_rdoc_files: []
|
188
|
+
files:
|
189
|
+
- ".gitignore"
|
190
|
+
- ".travis.yml"
|
191
|
+
- Gemfile
|
192
|
+
- LICENSE.txt
|
193
|
+
- README.md
|
194
|
+
- Rakefile
|
195
|
+
- bin/ripe
|
196
|
+
- lib/ripe.rb
|
197
|
+
- lib/ripe/block.rb
|
198
|
+
- lib/ripe/controller.rb
|
199
|
+
- lib/ripe/liquid_block.rb
|
200
|
+
- lib/ripe/multi_block.rb
|
201
|
+
- lib/ripe/parallel_block.rb
|
202
|
+
- lib/ripe/serial_block.rb
|
203
|
+
- lib/ripe/task.rb
|
204
|
+
- lib/ripe/task_migration.rb
|
205
|
+
- lib/ripe/version.rb
|
206
|
+
- lib/ripe/worker.rb
|
207
|
+
- lib/ripe/worker_migration.rb
|
208
|
+
- lib/ripe/working_block.rb
|
209
|
+
- ripe.gemspec
|
210
|
+
- share/moab.sh
|
211
|
+
- spec/ripe_spec.rb
|
212
|
+
- spec/spec_helper.rb
|
213
|
+
homepage: https://github.com/ndejay/ripe
|
214
|
+
licenses:
|
215
|
+
- MIT
|
216
|
+
metadata: {}
|
217
|
+
post_install_message:
|
218
|
+
rdoc_options: []
|
219
|
+
require_paths:
|
220
|
+
- lib
|
221
|
+
required_ruby_version: !ruby/object:Gem::Requirement
|
222
|
+
requirements:
|
223
|
+
- - ">="
|
224
|
+
- !ruby/object:Gem::Version
|
225
|
+
version: '0'
|
226
|
+
required_rubygems_version: !ruby/object:Gem::Requirement
|
227
|
+
requirements:
|
228
|
+
- - ">="
|
229
|
+
- !ruby/object:Gem::Version
|
230
|
+
version: '0'
|
231
|
+
requirements: []
|
232
|
+
rubyforge_project:
|
233
|
+
rubygems_version: 2.2.2
|
234
|
+
signing_key:
|
235
|
+
specification_version: 4
|
236
|
+
summary: Abstraction layer between the MOAB/Torque stack and your pipeline.
|
237
|
+
test_files:
|
238
|
+
- spec/ripe_spec.rb
|
239
|
+
- spec/spec_helper.rb
|