rinruby 1.1.1 → 1.2.0

data/Manifest.txt

@@ -0,0 +1,9 @@
+History.txt
+LICENSE.txt
+Manifest.txt
+README.txt
+Rakefile
+lib/rinruby.rb
+spec/rinruby_spec.rb
+spec/spec.opts
+spec/spec_helper.rb

data/README.txt

@@ -1,646 +1,66 @@
-RinRuby: Accessing the R interpreter from pure Ruby
-http://rinruby.ddahl.org
+= rinruby
 
-Copyright 2005-2008 David B. Dahl
-
-Developed by David B. Dahl
-Documented by David B. Dahl and Scott Crawford
-Homepage: http://rinruby.ddahl.org
-
-
-
-
-This program is free software: you can redistribute it and/or modify
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-the Free Software Foundation, either version 3 of the License, or
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+* http://rinruby.ddahl.org/
 
-  You may convey a work based on the Program, or the modifications to
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-terms of section 4, provided that you also meet all of these conditions:
+== DESCRIPTION:
 
-    a) The work must carry prominent notices stating that you modified
-    it, and giving a relevant date.
+RinRuby is a Ruby library that integrates the R interpreter in Ruby, making R's statistical routines and graphics available within Ruby.  The library consists of a single Ruby script that is simple to install and does not require any special compilation or installation of R.  Since the library is 100% pure Ruby, it works on a variety of operating systems, Ruby implementations, and versions of R.  RinRuby's methods are simple, making for readable code.  The {website [rinruby.ddahl.org]}[http://rinruby.ddahl.org] describes RinRuby usage, provides comprehensive documentation, gives several examples, and discusses RinRuby's implementation.
 
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+Copyright 2005-2008 David B. Dahl
 
-  12. No Surrender of Others' Freedom.
+Developed by David B. Dahl
+Documented by David B. Dahl and Scott Crawford
+Homepage: http://rinruby.ddahl.org
 
-  If conditions are imposed on you (whether by court order, agreement or
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+Contributors: Claudio Bustos
 
-  13. Use with the GNU Affero General Public License.
+== FEATURES/PROBLEMS:
 
-  Notwithstanding any other provision of this License, you have
-permission to link or combine any covered work with a work licensed
-under version 3 of the GNU Affero General Public License into a single
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+* Pure Ruby. Works on Ruby 1.8.7, 1.9 and JRuby 1.4
+* Slower than RSRuby, but more robuts
 
-  14. Revised Versions of this License.
+== SYNOPSIS:
+Below is a simple example of RinRuby usage for simple linear regression. The simulation parameters are defined in Ruby, computations are performed in R, and Ruby reports the results. In a more elaborate application, the simulation parameter might come from input from a graphical user interface, the statistical analysis might be more involved, and the results might be an HTML page or PDF report. 
 
-  The Free Software Foundation may publish revised and/or new versions of
-the GNU General Public License from time to time.  Such new versions will
-be similar in spirit to the present version, but may differ in detail to
-address new problems or concerns.
+<b>Code</b>:
 
-  Each version is given a distinguishing version number.  If the
-Program specifies that a certain numbered version of the GNU General
-Public License "or any later version" applies to it, you have the
-option of following the terms and conditions either of that numbered
-version or of any later version published by the Free Software
-Foundation.  If the Program does not specify a version number of the
-GNU General Public License, you may choose any version ever published
-by the Free Software Foundation.
+      require "rinruby"
+      n = 10
+      beta_0 = 1
+      beta_1 = 0.25
+      alpha = 0.05
+      seed = 23423
+      R.x = (1..n).entries
+      R.eval <<EOF
+          set.seed({seed})
+          y <- {beta_0} + {beta_1}*x + rnorm({n})
+          fit <- lm( y ~ x )
+          est <- round(coef(fit),3)
+          pvalue <- summary(fit)$coefficients[2,4]
+      EOF
+      puts "E(y|x) ~= {R.est[0]} + {R.est[1]} * x"
+      if R.pvalue < alpha
+        puts "Reject the null hypothesis and conclude that x and y are related."
+      else
+        puts "There is insufficient evidence to conclude that x and y are related."
+      end
 
-  If the Program specifies that a proxy can decide which future
-versions of the GNU General Public License can be used, that proxy's
-public statement of acceptance of a version permanently authorizes you
-to choose that version for the Program.
+<b>Output</b>:
 
-  Later license versions may give you additional or different
-permissions.  However, no additional obligations are imposed on any
-author or copyright holder as a result of your choosing to follow a
-later version.
+      E(y|x) ~= 1.264 + 0.273 * x
+      Reject the null hypothesis and conclude that x and y are related.
 
-  15. Disclaimer of Warranty.
+== REQUIREMENTS:
 
-  THERE IS NO WARRANTY FOR THE PROGRAM, TO THE EXTENT PERMITTED BY
-APPLICABLE LAW.  EXCEPT WHEN OTHERWISE STATED IN WRITING THE COPYRIGHT
-HOLDERS AND/OR OTHER PARTIES PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY
-OF ANY KIND, EITHER EXPRESSED OR IMPLIED, INCLUDING, BUT NOT LIMITED TO,
-THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
-PURPOSE.  THE ENTIRE RISK AS TO THE QUALITY AND PERFORMANCE OF THE PROGRAM
-IS WITH YOU.  SHOULD THE PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF
-ALL NECESSARY SERVICING, REPAIR OR CORRECTION.
+* R
 
-  16. Limitation of Liability.
+== INSTALL:
 
-  IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING
-WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MODIFIES AND/OR CONVEYS
-THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES, INCLUDING ANY
-GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE
-USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED TO LOSS OF
-DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY YOU OR THIRD
-PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER PROGRAMS),
-EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF
-SUCH DAMAGES.
+* sudo gem install rinruby
 
-  17. Interpretation of Sections 15 and 16.
 
-  If the disclaimer of warranty and limitation of liability provided
-above cannot be given local legal effect according to their terms,
-reviewing courts shall apply local law that most closely approximates
-an absolute waiver of all civil liability in connection with the
-Program, unless a warranty or assumption of liability accompanies a
-copy of the Program in return for a fee.
+== LICENSE:
 
-                     END OF TERMS AND CONDITIONS
+GPL-3. See LICENSE.txt for more information.