rgl 0.2.3 → 0.3.0
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- data/ChangeLog +340 -86
- data/README +31 -19
- data/Rakefile +43 -36
- data/examples/{insel.rb → insel-der-tausend-gefahren.rb} +53 -4
- data/lib/rgl/adjacency.rb +29 -8
- data/lib/rgl/base.rb +50 -116
- data/lib/rgl/bidirectional.rb +40 -0
- data/lib/rgl/dot.rb +7 -7
- data/lib/rgl/enumerable_ext.rb +13 -0
- data/lib/rgl/graphxml.rb +14 -26
- data/lib/rgl/mutable.rb +29 -1
- data/lib/rgl/rdot.rb +293 -175
- data/rakelib/dep_graph.rake +30 -0
- data/tests/TestComponents.rb +2 -4
- data/tests/TestCycles.rb +61 -0
- data/tests/TestDirectedGraph.rb +64 -59
- data/tests/TestDot.rb +18 -0
- data/tests/TestEdge.rb +23 -22
- data/tests/TestGraph.rb +55 -0
- data/tests/TestGraphXML.rb +2 -2
- data/tests/TestRdot.rb +815 -0
- data/tests/TestTransitiveClosure.rb +1 -4
- data/tests/TestTraversal.rb +1 -3
- data/tests/test_helper.rb +7 -0
- metadata +148 -138
- data/TAGS +0 -253
- data/examples/codegraph +0 -238
- data/examples/debgraph.rb +0 -118
- data/examples/graph.dot +0 -768
@@ -0,0 +1,40 @@
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require 'rgl/base'
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module RGL
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# BGL defines the concept BidirectionalGraph as follows:
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#
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# The BidirectionalGraph concept refines IncidenceGraph and adds the
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# requirement for efficient access to the in-edges of each vertex. This
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# concept is separated from IncidenceGraph because, for directed graphs,
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# efficient access to in-edges typically requires more storage space,
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# and many algorithms do not require access to in-edges. For undirected
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# graphs, this is not an issue; because the in_edges() and out_edges()
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# functions are the same, they both return the edges incident to the vertex.
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module BidirectionalGraph
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include Graph
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# Iterator providing access to the in-edges (for directed graphs) or incident
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# edges (for undirected graphs) of vertex _v_. For both directed and
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# undirected graphs, the target of an out-edge is required to be vertex _v_
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# and the source is required to be a vertex that is adjacent to _v_.
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def each_in_neighbor (v)
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raise NotImplementedError
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yield u
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end
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# Returns the number of in-edges (for directed graphs) or the number of
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# incident edges (for undirected graphs) of vertex _v_.
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def in_degree (v)
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r = 0;
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each_in_neighbor(v) { |u| r += 1}
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r
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end
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# Returns the number of in-edges plus out-edges (for directed graphs) or the
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# number of incident edges (for undirected graphs) of vertex _v_.
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def degree (v)
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in_degree(v) + out_degree(v)
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end
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end
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end
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data/lib/rgl/dot.rb
CHANGED
@@ -1,6 +1,6 @@
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# dot.rb
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#
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# $Id: dot.rb,v 1.
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# $Id: dot.rb,v 1.7 2008/02/26 06:01:22 javanthropus Exp $
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#
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# Minimal Dot support, based on Dave Thomas's dot module (included in rdoc).
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# rdot.rb is a modified version which also contains support for undirected
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@@ -23,13 +23,13 @@ module RGL
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edge_class = directed? ? DOT::DOTDirectedEdge : DOT::DOTEdge
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each_vertex do |v|
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name = v.to_s
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-
graph << DOT::DOTNode.new('name' =>
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graph << DOT::DOTNode.new('name' => name,
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'fontsize' => fontsize,
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'label' => name)
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end
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each_edge do |u,v|
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graph << edge_class.new('from' =>
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'to' =>
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graph << edge_class.new('from' => u.to_s,
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'to' => v.to_s,
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'fontsize' => fontsize)
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end
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graph
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@@ -41,7 +41,7 @@ module RGL
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s << to_dot_graph(params).to_s << "\n"
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end
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# Call
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# Call dotty[http://www.graphviz.org] for the graph which is written to the file 'graph.dot'
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# in the # current directory.
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def dotty (params = {})
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@@ -52,8 +52,8 @@ module RGL
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system("dotty", dotfile)
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end
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# Use
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# filename of the graphics file.
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# Use dot[http://www.graphviz.org] to create a graphical representation of
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# the graph. Returns the filename of the graphics file.
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def write_to_graphic_file (fmt='png', dotfile="graph")
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src = dotfile + ".dot"
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@@ -0,0 +1,13 @@
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module Enumerable
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# Fixnum()
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#
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# Return the number of elements of the Enumerable. Same as _size_ but not all
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# Enumerables implement size.
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#--
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# Should we call the methods _size_?
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def length
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inject(0) do |sum,v|
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sum + 1
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end
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end
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end
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data/lib/rgl/graphxml.rb
CHANGED
@@ -16,26 +16,20 @@ require 'rexml/document'
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require 'rexml/streamlistener'
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module RGL
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-
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-
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# method from_graphxml.
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#
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# Attention: Because append_features is used to provide the functionality,
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# GraphXML must be loaded before the concrete class including MutableGraph
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# is loaded.
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module GraphXML
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-
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module MutableGraph
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# Used to parse a subset of GraphML into an RGL graph implementation.
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class MutableGraphParser
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-
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include REXML::StreamListener
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# First resets +graph+ to be empty and stores a reference for use with
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# #tag_start.
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def initialize (graph)
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@graph = graph
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@graph.remove_vertices(@graph.vertices)
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end
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# Processes incoming edge and node elements from GraphML in order to
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# populate the graph given to #new.
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def tag_start (name, attrs)
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case name
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when 'edge'
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@@ -44,20 +38,14 @@ module RGL
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@graph.add_vertex(attrs['id'])
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end
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end
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-
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end # class MutableGraphParser
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-
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def MutableGraph.append_features (includingClass)
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super
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# Create a new MutableGraph from the XML-Source _source_.
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# Initializes an RGL graph from a subset of the GraphML format given in
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# +source+ (see http://www.graphdrawing.org/graphml).
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def from_graphxml(source)
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listener = MutableGraphParser.new(self)
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REXML::Document.parse_stream(source, listener)
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self
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end
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-
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end # module GraphXML
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end # module MutableGraph
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end # module RGL
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data/lib/rgl/mutable.rb
CHANGED
@@ -6,7 +6,6 @@ module RGL
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# A MutableGraph can be changed via the addition or removal of edges and
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# vertices.
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module MutableGraph
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include Graph
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@@ -71,5 +70,34 @@ module RGL
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a.each { |v| remove_vertex v }
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end
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# Returns all minimum cycles that pass through a give vertex.
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# The format is an Array of cycles, with each cycle being an Array
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# of vertices in the cycle.
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def cycles_with_vertex(vertex)
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cycles_with_vertex_helper(vertex, vertex, [])
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end
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protected
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def cycles_with_vertex_helper(vertex, start, visited) #:nodoc:
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adjacent_vertices(start).reject {|x| visited.include?(x)}.inject([]) do |acc, adj|
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local_visited = Array.new(visited) << adj
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acc << local_visited if (adj==vertex)
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acc = acc + cycles_with_vertex_helper(vertex,adj,local_visited)
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end
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end
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public
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# Returns an array of all minimum cycles in a graph
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#
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# This is not an efficient implementation O(n^4) and could
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# be done using Minimum Spanning Trees. Hint. Hint.
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def cycles
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g = self.clone
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self.inject([]) do |acc, v|
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acc = acc.concat(g.cycles_with_vertex(v))
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g.remove_vertex(v); acc
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end
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end
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end # module MutableGraph
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end # module RGL
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data/lib/rgl/rdot.rb
CHANGED
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# rdot.rb
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#
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# $Id: rdot.rb,v 1.4 2005/03/26 15:06:36 wsdng Exp $
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#
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# This is a modified version of dot.rb from Dave Thomas's rdoc project. I
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# renamed it to rdot.rb to avoid collision with an installed rdoc/dot.
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#
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# It also supports undirected edges.
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module DOT
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# These glogal vars are used to make nice graph source.
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$tab = ' '
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$tab2 = $tab * 2
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# if we don't like 4 spaces, we can change it any time
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def change_tab (t)
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$tab = t
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$tab2 = t * 2
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end
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# options for node declaration
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NODE_OPTS = [
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# attributes due to
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# http://www.graphviz.org/Documentation/dotguide.pdf
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#
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'bottomlabel', # auxiliary label for nodes of shape M*
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# February 23, 2008
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'color', # default: black; node shape color
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'comment', # any string (format-dependent)
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'distortion', # default: 0.0; node distortion for shape=polygon
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@@ -36,7 +19,7 @@ module DOT
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'fontcolor', # default: black; type face color
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'fontname', # default: Times-Roman; font family
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'fontsize', #default: 14; point size of label
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'group', # name of node
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'group', # name of node's group
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'height', # default: .5; height in inches
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'label', # default: node name; any string
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'layer', # default: overlay range; all, id or id:id
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@@ -48,16 +31,17 @@ module DOT
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'sides', # default: 4; number of sides for shape=polygon
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'skew' , # default: 0.0; skewing of node for shape=polygon
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'style', # graphics options, e.g. bold, dotted, filled; cf. Section 2.3
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'toplabel', # auxiliary label for nodes of shape M*
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'URL', # URL associated with node (format-dependent)
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'width', # default: .75; width in inches
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'z', #default: 0.0; z coordinate for VRML output
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# maintained for backward compatibility or rdot internal
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'bottomlabel', # auxiliary label for nodes of shape M*
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'bgcolor',
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'rank'
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'rank',
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'toplabel' # auxiliary label for nodes of shape M*
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]
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-
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+
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# options for edge declaration
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EDGE_OPTS = [
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@@ -97,192 +81,286 @@ module DOT
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# maintained for backward compatibility or rdot internal
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'id'
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]
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-
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+
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# options for graph declaration
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GRAPH_OPTS = [
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'bgcolor',
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'center',
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'
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'
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-
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'
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'
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'
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'
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'
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-
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-
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-
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'bgcolor', # background color for drawing, plus initial fill color
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'center', # default: false; center draing on page
|
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+
'clusterrank', # default: local; may be "global" or "none"
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'color', # default: black; for clusters, outline color, and fill color if
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# fillcolor not defined
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'comment', # any string (format-dependent)
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'compound', # default: false; allow edges between clusters
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'concentrate', # default: false; enables edge concentrators
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'fillcolor', # default: black; cluster fill color
|
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'fontcolor', # default: black; type face color
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'fontname', # default: Times-Roman; font family
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'fontpath', # list of directories to search for fonts
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'fontsize', # default: 14; point size of label
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'label', # any string
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'labeljust', # default: centered; "l" and "r" for left- and right-justified
|
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# cluster labels, respectively
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'labelloc', # default: top; "t" and "b" for top- and bottom-justified
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# cluster labels, respectively
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'layers', # id:id:id...
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'margin', # default: .5; margin included in page, inches
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'mclimit', # default: 1.0; scale factor for mincross iterations
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+
'nodesep', # default: .25; separation between nodes, in inches.
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+
'nslimit', # if set to "f", bounds network simplex iterations by
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# (f)(number of nodes) when setting x-coordinates
|
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+
'nslimit1', # if set to "f", bounds network simplex iterations by
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# (f)(number of nodes) when ranking nodes
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'ordering', # if "out" out edge order is preserved
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'orientation', # default: portrait; if "rotate" is not used and the value is
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# "landscape", use landscape orientation
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'page', # unit of pagination, e.g. "8.5,11"
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'rank', # "same", "min", "max", "source", or "sink"
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'rankdir', # default: TB; "LR" (left to right) or "TB" (top to bottom)
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'ranksep', # default: .75; separation between ranks, in inches.
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'ratio', # approximate aspect ratio desired, "fill" or "auto"
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'samplepoints', # default: 8; number of points used to represent ellipses
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# and circles on output
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'searchsize', # default: 30; maximum edges with negative cut values to check
|
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# when looking for a minimum one during network simplex
|
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'size', # maximum drawing size, in inches
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'style', # graphics options, e.g. "filled" for clusters
|
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'URL', # URL associated with graph (format-dependent)
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-
|
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# maintained for backward compatibility or rdot internal
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'layerseq'
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]
|
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133
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135
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-
|
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+
# Ancestor of DOTEdge, DOTNode, and DOTGraph.
|
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+
class DOTElement
|
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136
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attr_accessor :name, :options
|
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137
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|
138
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-
def initialize (params = {}, option_list = [])
|
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-
|
140
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-
@name = params['name'] ? params['name'] : nil
|
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-
@parent = params['parent'] ? params['parent'] : nil
|
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# Ports are used when a DOTNode instance has its `shape' option set to
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class DOTPort
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# Returns a string representation of this port. If ports is a non-empty
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else
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# A node representation. Edges are drawn between nodes. The rendering of a
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# node depends upon the options set for it.
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attr_accessor :ports
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# Creates a new DOTNode with the _params_ Hash providing settings for all
|
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# node options. The _option_list_ parameter restricts those options to the
|
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# list of valid names it contains. The exception to this is the _ports_
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# option which, if specified, must be an Enumerable containing a list of
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# ports.
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def initialize (params = {}, option_list = NODE_OPTS)
|
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|
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end
|
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# Returns a string representation of this node which is consumable by the
|
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# graphviz tools +dot+ and +neato+. The _leader_ parameter is used to indent
|
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|
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# every line of the returned string, and the _indent_ parameter is used to
|
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# additionally indent nested items.
|
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|
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def to_s (leader = '', indent = ' ')
|
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|
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label_option = nil
|
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|
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if @options['shape'] =~ /^M?record$/ && !@ports.empty? then
|
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|
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# Ignore the given label option in this case since the ports should each
|
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|
+
# provide their own name/label.
|
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label_option = leader + indent + "#{quote_ID('label')} = #{quote_ID(@ports.collect { |port| port.to_s }.join(" | "))}"
|
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|
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elsif @options['label'] then
|
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|
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# Otherwise, use the label when given one.
|
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|
+
label_option = leader + indent + "#{quote_ID('label')} = #{quote_label(@options['label'])}"
|
251
|
+
end
|
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|
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|
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# Convert all the options except `label' and options with nil values
|
254
|
+
# straight into name = value pairs. Then toss out any resulting nil
|
255
|
+
# entries in the final array.
|
256
|
+
stringified_options = @options.collect do |name, val|
|
257
|
+
unless name == 'label' || val.nil? then
|
258
|
+
leader + indent + "#{quote_ID(name)} = #{quote_ID(val)}"
|
259
|
+
end
|
260
|
+
end.compact
|
261
|
+
# Append the specially computed label option.
|
262
|
+
stringified_options.push(label_option) unless label_option.nil?
|
263
|
+
# Join them all together.
|
264
|
+
stringified_options = stringified_options.join(",\n")
|
265
|
+
|
266
|
+
# Put it all together into a single string with indentation and return the
|
267
|
+
# result.
|
268
|
+
if stringified_options.empty? then
|
269
|
+
return leader + quote_ID(@name) unless @name.nil?
|
270
|
+
return nil
|
271
|
+
else
|
272
|
+
return leader + (@name.nil? ? '' : quote_ID(@name) + " ") + "[\n" +
|
273
|
+
stringified_options + "\n" +
|
274
|
+
leader + "]"
|
231
275
|
end
|
276
|
+
end
|
232
277
|
|
233
278
|
end # class DOTNode
|
234
279
|
|
235
|
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# A
|
236
|
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#
|
237
|
-
|
238
|
-
class
|
239
|
-
|
240
|
-
@nodes
|
241
|
-
@dot_string
|
280
|
+
# A graph representation. Whether or not it is rendered as directed or
|
281
|
+
# undirected depends on which of the programs *dot* or *neato* is used to
|
282
|
+
# process and render the graph.
|
283
|
+
class DOTGraph < DOTElement
|
242
284
|
|
285
|
+
# Creates a new DOTGraph with the _params_ Hash providing settings for all
|
286
|
+
# graph options. The _option_list_ parameter restricts those options to the
|
287
|
+
# list of valid names it contains. The exception to this is the _elements_
|
288
|
+
# option which, if specified, must be an Enumerable containing a list of
|
289
|
+
# nodes, edges, and/or subgraphs.
|
243
290
|
def initialize (params = {}, option_list = GRAPH_OPTS)
|
244
291
|
super(params, option_list)
|
245
|
-
@
|
292
|
+
@elements = params['elements'] ? params['elements'] : []
|
246
293
|
@dot_string = 'graph'
|
247
294
|
end
|
248
295
|
|
249
|
-
|
250
|
-
|
296
|
+
# Calls _block_ once for each node, edge, or subgraph contained by this
|
297
|
+
# graph, passing the node, edge, or subgraph to the block.
|
298
|
+
#
|
299
|
+
# :call-seq:
|
300
|
+
# graph.each_element {|element| block} -> graph
|
301
|
+
#
|
302
|
+
def each_element (&block)
|
303
|
+
@elements.each(&block)
|
304
|
+
self
|
251
305
|
end
|
252
306
|
|
253
|
-
|
254
|
-
|
255
|
-
|
256
|
-
|
257
|
-
|
258
|
-
|
307
|
+
# Adds a new node, edge, or subgraph to this graph.
|
308
|
+
#
|
309
|
+
# :call-seq:
|
310
|
+
# graph << element -> graph
|
311
|
+
#
|
312
|
+
def << (element)
|
313
|
+
@elements << element
|
314
|
+
self
|
259
315
|
end
|
260
|
-
|
316
|
+
alias :push :<<
|
317
|
+
|
318
|
+
# Removes the most recently added node, edge, or subgraph from this graph
|
319
|
+
# and returns it.
|
320
|
+
#
|
321
|
+
# :call-seq:
|
322
|
+
# graph.pop -> element
|
323
|
+
#
|
261
324
|
def pop
|
262
|
-
@
|
325
|
+
@elements.pop
|
263
326
|
end
|
264
327
|
|
265
|
-
|
266
|
-
|
267
|
-
|
268
|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
275
|
-
|
276
|
-
|
277
|
-
|
328
|
+
# Returns a string representation of this graph which is consumable by the
|
329
|
+
# graphviz tools +dot+ and +neato+. The _leader_ parameter is used to indent
|
330
|
+
# every line of the returned string, and the _indent_ parameter is used to
|
331
|
+
# additionally indent nested items.
|
332
|
+
def to_s (leader = '', indent = ' ')
|
333
|
+
hdr = leader + @dot_string + (@name.nil? ? '' : ' ' + quote_ID(@name)) + " {\n"
|
334
|
+
|
335
|
+
options = @options.to_a.collect do |name, val|
|
336
|
+
unless val.nil? then
|
337
|
+
if name == 'label' then
|
338
|
+
leader + indent + "#{quote_ID(name)} = #{quote_label(val)}"
|
339
|
+
else
|
340
|
+
leader + indent + "#{quote_ID(name)} = #{quote_ID(val)}"
|
341
|
+
end
|
342
|
+
end
|
343
|
+
end.compact.join( "\n" )
|
344
|
+
|
345
|
+
elements = @elements.collect do |element|
|
346
|
+
element.to_s(leader + indent, indent)
|
347
|
+
end.join("\n\n")
|
348
|
+
hdr + (options.empty? ? '' : options + "\n\n") +
|
349
|
+
(elements.empty? ? '' : elements + "\n") + leader + "}"
|
278
350
|
end
|
279
351
|
|
280
|
-
end # class
|
281
|
-
|
282
|
-
# This is a graph.
|
352
|
+
end # class DOTGraph
|
283
353
|
|
284
|
-
|
354
|
+
# A digraph is a directed graph representation which is the same as a DOTGraph
|
355
|
+
# except that its header in dot notation has an identifier of _digraph_
|
356
|
+
# instead of _graph_.
|
357
|
+
class DOTDigraph < DOTGraph
|
285
358
|
|
359
|
+
# Creates a new DOTDigraph with the _params_ Hash providing settings for all
|
360
|
+
# graph options. The _option_list_ parameter restricts those options to the
|
361
|
+
# list of valid names it contains. The exception to this is the _elements_
|
362
|
+
# option which, if specified, must be an Enumerable containing a list of
|
363
|
+
# nodes, edges, and/or subgraphs.
|
286
364
|
def initialize (params = {}, option_list = GRAPH_OPTS)
|
287
365
|
super(params, option_list)
|
288
366
|
@dot_string = 'digraph'
|
@@ -290,38 +368,78 @@ module DOT
|
|
290
368
|
|
291
369
|
end # class DOTDigraph
|
292
370
|
|
293
|
-
#
|
371
|
+
# A subgraph is a nested graph element and is the same as a DOTGraph except
|
372
|
+
# that its header in dot notation has an identifier of _subgraph_ instead of
|
373
|
+
# _graph_.
|
374
|
+
class DOTSubgraph < DOTGraph
|
375
|
+
|
376
|
+
# Creates a new DOTSubgraph with the _params_ Hash providing settings for
|
377
|
+
# all graph options. The _option_list_ parameter restricts those options to
|
378
|
+
# list of valid names it contains. The exception to this is the _elements_
|
379
|
+
# option which, if specified, must be an Enumerable containing a list of
|
380
|
+
# nodes, edges, and/or subgraphs.
|
381
|
+
def initialize (params = {}, option_list = GRAPH_OPTS)
|
382
|
+
super(params, option_list)
|
383
|
+
@dot_string = 'subgraph'
|
384
|
+
end
|
385
|
+
|
386
|
+
end # class DOTSubgraph
|
294
387
|
|
388
|
+
# This is an undirected edge representation.
|
295
389
|
class DOTEdge < DOTElement
|
296
390
|
|
297
|
-
|
391
|
+
# A node or subgraph reference or instance to be used as the starting point
|
392
|
+
# for an edge.
|
393
|
+
attr_accessor :from
|
394
|
+
# A node or subgraph reference or instance to be used as the ending point
|
395
|
+
# for an edge.
|
396
|
+
attr_accessor :to
|
298
397
|
|
398
|
+
# Creates a new DOTEdge with the _params_ Hash providing settings for all
|
399
|
+
# edge options. The _option_list_ parameter restricts those options to the
|
400
|
+
# list of valid names it contains.
|
299
401
|
def initialize (params = {}, option_list = EDGE_OPTS)
|
300
402
|
super(params, option_list)
|
301
403
|
@from = params['from'] ? params['from'] : nil
|
302
404
|
@to = params['to'] ? params['to'] : nil
|
303
405
|
end
|
304
|
-
|
305
|
-
def edge_link
|
306
|
-
'--'
|
307
|
-
end
|
308
406
|
|
309
|
-
|
310
|
-
|
311
|
-
|
312
|
-
|
313
|
-
|
314
|
-
|
315
|
-
|
407
|
+
# Returns a string representation of this edge which is consumable by the
|
408
|
+
# graphviz tools +dot+ and +neato+. The _leader_ parameter is used to indent
|
409
|
+
# every line of the returned string, and the _indent_ parameter is used to
|
410
|
+
# additionally indent nested items.
|
411
|
+
def to_s (leader = '', indent = ' ')
|
412
|
+
stringified_options = @options.collect do |name, val|
|
413
|
+
unless val.nil? then
|
414
|
+
leader + indent + "#{quote_ID(name)} = #{quote_ID(val)}"
|
415
|
+
end
|
416
|
+
end.compact.join( ",\n" )
|
417
|
+
|
418
|
+
f_s = @from || ''
|
419
|
+
t_s = @to || ''
|
420
|
+
if stringified_options.empty? then
|
421
|
+
leader + quote_ID(f_s) + ' ' + edge_link + ' ' + quote_ID(t_s)
|
422
|
+
else
|
423
|
+
leader + quote_ID(f_s) + ' ' + edge_link + ' ' + quote_ID(t_s) + " [\n" +
|
424
|
+
stringified_options + "\n" +
|
425
|
+
leader + "]"
|
426
|
+
end
|
316
427
|
end
|
317
428
|
|
429
|
+
private
|
430
|
+
def edge_link
|
431
|
+
'--'
|
432
|
+
end
|
433
|
+
|
318
434
|
end # class DOTEdge
|
319
|
-
|
435
|
+
|
436
|
+
# A directed edge representation otherwise identical to DOTEdge.
|
320
437
|
class DOTDirectedEdge < DOTEdge
|
321
438
|
|
322
|
-
|
323
|
-
|
324
|
-
|
439
|
+
private
|
440
|
+
def edge_link
|
441
|
+
'->'
|
442
|
+
end
|
325
443
|
|
326
444
|
end # class DOTDirectedEdge
|
327
445
|
end # module DOT
|