replication 0.1.0
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- checksums.yaml +7 -0
- data/.gitignore +22 -0
- data/Gemfile +14 -0
- data/LICENSE.txt +22 -0
- data/README.md +120 -0
- data/Rakefile +13 -0
- data/db/migrate/714417722_replication_migration.rb +15 -0
- data/lib/replication/active_record/strand.rb +13 -0
- data/lib/replication/config.rb +21 -0
- data/lib/replication/engine.rb +5 -0
- data/lib/replication/modules/proofreading.rb +27 -0
- data/lib/replication/modules/semi_conservative.rb +35 -0
- data/lib/replication/process.rb +57 -0
- data/lib/replication/strand_methods.rb +16 -0
- data/lib/replication/version.rb +3 -0
- data/lib/replication.rb +27 -0
- data/replication.gemspec +24 -0
- data/test/orm/active_record.rb +10 -0
- data/test/rails_app/Rakefile +6 -0
- data/test/rails_app/app/models/.keep +0 -0
- data/test/rails_app/app/models/concerns/.keep +0 -0
- data/test/rails_app/app/models/organism.rb +3 -0
- data/test/rails_app/config/application.rb +34 -0
- data/test/rails_app/config/boot.rb +3 -0
- data/test/rails_app/config/database.yml +22 -0
- data/test/rails_app/config/environment.rb +5 -0
- data/test/rails_app/config/environments/test.rb +37 -0
- data/test/rails_app/config/initializers/backtrace_silencers.rb +7 -0
- data/test/rails_app/config/initializers/cookies_serializer.rb +3 -0
- data/test/rails_app/config/initializers/filter_parameter_logging.rb +4 -0
- data/test/rails_app/config/initializers/inflections.rb +16 -0
- data/test/rails_app/config/initializers/mime_types.rb +4 -0
- data/test/rails_app/config/initializers/session_store.rb +3 -0
- data/test/rails_app/config/initializers/wrap_parameters.rb +14 -0
- data/test/rails_app/config/routes.rb +56 -0
- data/test/rails_app/config/secrets.yml +22 -0
- data/test/rails_app/config.ru +4 -0
- data/test/rails_app/db/migrate/830335961_organism_migration.rb +15 -0
- data/test/rails_app/log/test.log +1476 -0
- data/test/replication/modules/proofreading_test.rb +22 -0
- data/test/replication/modules/semi_conservative_test.rb +24 -0
- data/test/replication/process_test.rb +51 -0
- data/test/replication_test.rb +9 -0
- data/test/test_helper.rb +11 -0
- metadata +142 -0
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data/.gitignore
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*.gem
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*.rbc
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.bundle
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.config
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.yardoc
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Gemfile.lock
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InstalledFiles
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_yardoc
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coverage
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doc/
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lib/bundler/man
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pkg
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rdoc
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spec/reports
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test/tmp
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test/version_tmp
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tmp
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*.bundle
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*.so
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*.o
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*.a
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mkmf.log
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data/Gemfile
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data/LICENSE.txt
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Copyright (c) 2014 Rodrigo DeAlmeida
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MIT License
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Permission is hereby granted, free of charge, to any person obtaining
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a copy of this software and associated documentation files (the
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"Software"), to deal in the Software without restriction, including
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without limitation the rights to use, copy, modify, merge, publish,
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distribute, sublicense, and/or sell copies of the Software, and to
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permit persons to whom the Software is furnished to do so, subject to
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the following conditions:
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The above copyright notice and this permission notice shall be
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included in all copies or substantial portions of the Software.
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THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
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EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
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MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
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NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE
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LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION
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OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION
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WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
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data/README.md
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# Replication
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Data replication as templates for Ruby ORMs.
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> ![DNA]
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>
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> DNA replication. The [double helix][] is unwound and each strand acts as a template for the next strand. [Bases][] are matched to synthesize the new partner strands.
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[DNA]: https://upload.wikimedia.org/wikipedia/commons/thumb/7/70/DNA_replication_split.svg/200px-DNA_replication_split.svg.png
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[double helix]: https://en.wikipedia.org/wiki/Double_helix "Double helix"
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[Bases]: https://en.wikipedia.org/wiki/Nucleotides "Nucleotides"
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## Installation
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Add this line to your application's Gemfile:
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gem 'replication'
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And then execute:
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$ bundle
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Or install it yourself as:
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$ gem install replication
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## Usage
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Extend ```Replication::Process``` in your models and declare it.
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```ruby
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class Model
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extend Replication::Process
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can_replicate
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end
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```
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Customize the 'pairs' method if you want.
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```ruby
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class Model
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extend Replication::Process
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can_replicate :attributes_alias # default method is 'attributes'
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end
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```
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Customize the class of the strands if you want.
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```ruby
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class Model
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extend Replication::Process
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can_replicate strand_class: WeirdStrandClass
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end
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```
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You can blacklist an array of attributes. They'll not be replicated in the new strand.
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```ruby
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can_replicate except: [:id, :name]
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```
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To 'unwound' a strand, do:
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```ruby
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model_instance = Model.new(attrs)
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model_instance.unwound(name: 'The Original Model') # returns a new strand
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```
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To 'unwound' and save a strand, do:
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```ruby
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model_instance = Model.new(attrs)
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model_instance.replicate(name: 'The Original Model') # returns a new persisted strand
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```
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To be able to 'unwound' only when the object is valid, include Proofreading.
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Right now it needs a ```valid?``` method to check.
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```ruby
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class Model
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extend Replication::Process
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can_replicate with: :proofreading
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end
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model_instance = Model.new(invalid_attrs)
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model_instance.unwound(name: 'The Original Model') # returns nil
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model_instance.replicate(name: 'The Original Model') # raises UnwoundError
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```
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To initialize a object that's descendant from the strand of another object, do:
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```ruby
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Model.new_from_strand([name or id])
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# or
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strand.replicate
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```
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### ActiveRecord
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For ActiveRecord strands, ```[:id, :created_at, :updated_at]``` will be blacklisted by default.
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It's highly recommended that you save your model instances before trying to replicate, since it
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needs the 'id' and 'type' references for the association.
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In some cases you don't want/won't need the strands to be associated, so, be free.
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### Rails
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Migrations are be provided by:
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```
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rake replication_engine:install:migrations
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```
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## TODO
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- Add ActiveRecord inverse association: 'strands'.
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- Refactoring, mainly about dependencies.
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- Thorough testing.
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- Scoping.
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- More ORMs/ODMs.
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## Contributing
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1. Fork it ( https://github.com/rodrigoddalmeida/replication/fork )
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2. Create your feature branch (`git checkout -b my-new-feature`)
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3. Commit your changes (`git commit -am 'Add some feature'`)
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4. Push to the branch (`git push origin my-new-feature`)
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5. Create a new Pull Request
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data/Rakefile
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require "bundler/gem_tasks"
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require 'rake/testtask'
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task default: :test
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desc 'Run unit tests.'
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Rake::TestTask.new(:test) do |t|
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t.libs << 'lib'
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t.libs << 'test'
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t.pattern = 'test/**/*_test.rb'
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t.verbose = true
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t.warning = false
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end
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class ReplicationMigration < ActiveRecord::Migration
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def self.up
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create_table :strands do |t|
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t.string :name
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t.text :pairs
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t.references :origin, polymorphic: true, index: true
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t.timestamps
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end
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end
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def self.down
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drop_table :strands
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end
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end
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require "orm_adapter/adapters/active_record"
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module Replication
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module ActiveRecord
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class Strand < ::ActiveRecord::Base
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extend Replication::StrandMethods
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serialize :pairs
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belongs_to :origin, polymorphic: true
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validates :name, uniqueness: true, presence: true
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end
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end
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end
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module Replication
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class Config
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attr_accessor :model_class, :pairs_method, :strand_class, :except
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def initialize(model_class)
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@model_class = model_class
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end
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def with(modules)
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modules.each do |m|
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model_class.send :extend, Replication::Modules.const_get(m.to_s.classify)
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end
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end
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def set(options)
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options and options.each {|name, value| self.send "#{name}=", value}
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end
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end
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end
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module Replication
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module Modules
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module Proofreading
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def self.extended(model_class)
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model_class.class_eval do
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include Model
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end
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end
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module Model
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def unwound(**options)
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super if valid?
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end
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def replicate(**options)
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if valid?
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super
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else
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raise Replication::UnwoundError, 'The origin must be valid!'
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end
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end
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end
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end
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end
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end
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module Replication
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module Modules
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module SemiConservative
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def self.extended(model_class)
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model_class.class_eval do
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include Model
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end
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end
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module Model
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def unwound(**options)
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strand_class.new({
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name: options[:name],
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pairs: strand_attributes,
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origin: self
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})
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end
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def replicate(**options)
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strand_class.to_adapter.create!({
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name: options[:name],
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pairs: strand_attributes,
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origin: self
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})
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end
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def strand_attributes
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_strand_attributes.except(*replication_config.except)
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end
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end
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end
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end
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end
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module Replication
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module Process
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def self.extended(model_class)
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model_class.class_eval do
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@@replication_config = Class.new(Config).new(self)
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include Model
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end
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end
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# Include or extend it. We work with both.
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def self.included(model_class)
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model_class.extend self
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end
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def can_replicate(pairs_method = :attributes, **options)
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default_options = Replication.defaults
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modules = [:semi_conservative] # required module
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modules.concat(Array(options.delete(:with)))
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@@replication_config.pairs_method = pairs_method
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@@replication_config.set default_options.merge(options)
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@@replication_config.with modules
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end
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def new_from_strand(id=nil, **options)
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if id
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strand = replication_config.strand_class.to_adapter.get!(id)
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else
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strand = replication_config.strand_class.to_adapter.find_first(options)
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end
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new(strand.pairs) if strand
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end
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def replication_config
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@@replication_config
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end
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module Model
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def strand_class
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replication_config.strand_class
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end
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def replication_config
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self.class.replication_config
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end
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private
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def _strand_attributes
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send(replication_config.pairs_method).deep_symbolize_keys
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end
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end
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end
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end
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data/lib/replication.rb
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require "replication/version"
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module Replication
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autoload :Process, 'replication/process'
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6
|
+
autoload :Config, 'replication/config'
|
7
|
+
autoload :StrandMethods, 'replication/strand_methods'
|
8
|
+
|
9
|
+
module ActiveRecord
|
10
|
+
autoload :Strand, 'replication/active_record/strand'
|
11
|
+
end
|
12
|
+
|
13
|
+
module Modules
|
14
|
+
autoload :SemiConservative, 'replication/modules/semi_conservative'
|
15
|
+
autoload :Proofreading, 'replication/modules/proofreading'
|
16
|
+
end
|
17
|
+
|
18
|
+
def self.defaults
|
19
|
+
defaults = {}
|
20
|
+
defaults.merge({
|
21
|
+
strand_class: ::Replication::ActiveRecord::Strand,
|
22
|
+
except: [:id, :created_at, :updated_at]
|
23
|
+
}) if defined?(ActiveRecord)
|
24
|
+
end
|
25
|
+
|
26
|
+
class UnwoundError < StandardError; end;
|
27
|
+
end
|
data/replication.gemspec
ADDED
@@ -0,0 +1,24 @@
|
|
1
|
+
# coding: utf-8
|
2
|
+
lib = File.expand_path('../lib', __FILE__)
|
3
|
+
$LOAD_PATH.unshift(lib) unless $LOAD_PATH.include?(lib)
|
4
|
+
require 'replication/version'
|
5
|
+
|
6
|
+
Gem::Specification.new do |spec|
|
7
|
+
spec.name = "replication"
|
8
|
+
spec.version = Replication::VERSION
|
9
|
+
spec.platform = Gem::Platform::RUBY
|
10
|
+
spec.authors = ["Rodrigo DeAlmeida"]
|
11
|
+
spec.email = ["rodrigoddalmeida@gmail.com"]
|
12
|
+
spec.summary = %q{Data replication as templates for Ruby ORMs}
|
13
|
+
spec.description = %q{Data replication as templates for Ruby ORMs}
|
14
|
+
spec.homepage = ""
|
15
|
+
spec.license = "MIT"
|
16
|
+
|
17
|
+
spec.files = `git ls-files -z`.split("\x0")
|
18
|
+
spec.executables = spec.files.grep(%r{^bin/}) { |f| File.basename(f) }
|
19
|
+
spec.test_files = spec.files.grep(%r{^(test|spec|features)/})
|
20
|
+
spec.require_paths = ["lib"]
|
21
|
+
|
22
|
+
spec.add_development_dependency "bundler", "~> 1.6"
|
23
|
+
spec.add_development_dependency "rake"
|
24
|
+
end
|
@@ -0,0 +1,10 @@
|
|
1
|
+
ActiveRecord::Migration.verbose = false
|
2
|
+
ActiveRecord::Base.logger = Logger.new(nil)
|
3
|
+
ActiveRecord::Base.include_root_in_json = true
|
4
|
+
|
5
|
+
ActiveRecord::Migrator.migrate([File.expand_path("../../../db/migrate/", __FILE__), File.expand_path("../../rails_app/db/migrate/", __FILE__)])
|
6
|
+
|
7
|
+
class ActiveSupport::TestCase
|
8
|
+
self.use_transactional_fixtures = true
|
9
|
+
self.use_instantiated_fixtures = false
|
10
|
+
end
|
File without changes
|
File without changes
|
@@ -0,0 +1,34 @@
|
|
1
|
+
require File.expand_path('../boot', __FILE__)
|
2
|
+
|
3
|
+
# Pick the frameworks you want:
|
4
|
+
require "active_model/railtie"
|
5
|
+
# require "action_controller/railtie"
|
6
|
+
# require "action_mailer/railtie"
|
7
|
+
# require "action_view/railtie"
|
8
|
+
# require "sprockets/railtie"
|
9
|
+
require "rails/test_unit/railtie"
|
10
|
+
|
11
|
+
Bundler.require :default, REPLICATION_ORM
|
12
|
+
|
13
|
+
begin
|
14
|
+
require "#{REPLICATION_ORM}/railtie"
|
15
|
+
rescue LoadError
|
16
|
+
end
|
17
|
+
|
18
|
+
require "replication"
|
19
|
+
|
20
|
+
module RailsApp
|
21
|
+
class Application < Rails::Application
|
22
|
+
# Settings in config/environments/* take precedence over those specified here.
|
23
|
+
# Application configuration should go into files in config/initializers
|
24
|
+
# -- all .rb files in that directory are automatically loaded.
|
25
|
+
|
26
|
+
# Set Time.zone default to the specified zone and make Active Record auto-convert to this zone.
|
27
|
+
# Run "rake -D time" for a list of tasks for finding time zone names. Default is UTC.
|
28
|
+
# config.time_zone = 'Central Time (US & Canada)'
|
29
|
+
|
30
|
+
# The default locale is :en and all translations from config/locales/*.rb,yml are auto loaded.
|
31
|
+
# config.i18n.load_path += Dir[Rails.root.join('my', 'locales', '*.{rb,yml}').to_s]
|
32
|
+
# config.i18n.default_locale = :de
|
33
|
+
end
|
34
|
+
end
|
@@ -0,0 +1,22 @@
|
|
1
|
+
# SQLite version 3.x
|
2
|
+
# gem install sqlite3
|
3
|
+
#
|
4
|
+
# Ensure the SQLite 3 gem is defined in your Gemfile
|
5
|
+
# gem 'sqlite3'
|
6
|
+
#
|
7
|
+
development:
|
8
|
+
adapter: sqlite3
|
9
|
+
database: db/development.sqlite3
|
10
|
+
pool: 5
|
11
|
+
timeout: 5000
|
12
|
+
|
13
|
+
# Warning: The database defined as "test" will be erased and
|
14
|
+
# re-generated from your development database when you run "rake".
|
15
|
+
# Do not set this db to the same as development or production.
|
16
|
+
test:
|
17
|
+
adapter: sqlite3
|
18
|
+
database: ":memory:"
|
19
|
+
|
20
|
+
production:
|
21
|
+
adapter: sqlite3
|
22
|
+
database: ":memory:"
|
@@ -0,0 +1,37 @@
|
|
1
|
+
RailsApp::Application.configure do
|
2
|
+
# Settings specified here will take precedence over those in config/application.rb.
|
3
|
+
|
4
|
+
# The test environment is used exclusively to run your application's
|
5
|
+
# test suite. You never need to work with it otherwise. Remember that
|
6
|
+
# your test database is "scratch space" for the test suite and is wiped
|
7
|
+
# and recreated between test runs. Don't rely on the data there!
|
8
|
+
config.cache_classes = true
|
9
|
+
|
10
|
+
# Do not eager load code on boot. This avoids loading your whole application
|
11
|
+
# just for the purpose of running a single test. If you are using a tool that
|
12
|
+
# preloads Rails for running tests, you may have to set it to true.
|
13
|
+
config.eager_load = false
|
14
|
+
|
15
|
+
# Configure static asset server for tests with Cache-Control for performance.
|
16
|
+
config.serve_static_assets = true
|
17
|
+
config.static_cache_control = 'public, max-age=3600'
|
18
|
+
|
19
|
+
# Show full error reports and disable caching.
|
20
|
+
config.consider_all_requests_local = true
|
21
|
+
|
22
|
+
# Raise exceptions instead of rendering exception templates.
|
23
|
+
config.action_dispatch.show_exceptions = false
|
24
|
+
|
25
|
+
# Disable request forgery protection in test environment.
|
26
|
+
|
27
|
+
# Tell Action Mailer not to deliver emails to the real world.
|
28
|
+
# The :test delivery method accumulates sent emails in the
|
29
|
+
# ActionMailer::Base.deliveries array.
|
30
|
+
# config.action_mailer.delivery_method = :test
|
31
|
+
|
32
|
+
# Print deprecation notices to the stderr.
|
33
|
+
config.active_support.deprecation = :stderr
|
34
|
+
|
35
|
+
# Raises error for missing translations
|
36
|
+
# config.action_view.raise_on_missing_translations = true
|
37
|
+
end
|
@@ -0,0 +1,7 @@
|
|
1
|
+
# Be sure to restart your server when you modify this file.
|
2
|
+
|
3
|
+
# You can add backtrace silencers for libraries that you're using but don't wish to see in your backtraces.
|
4
|
+
# Rails.backtrace_cleaner.add_silencer { |line| line =~ /my_noisy_library/ }
|
5
|
+
|
6
|
+
# You can also remove all the silencers if you're trying to debug a problem that might stem from framework code.
|
7
|
+
# Rails.backtrace_cleaner.remove_silencers!
|
@@ -0,0 +1,16 @@
|
|
1
|
+
# Be sure to restart your server when you modify this file.
|
2
|
+
|
3
|
+
# Add new inflection rules using the following format. Inflections
|
4
|
+
# are locale specific, and you may define rules for as many different
|
5
|
+
# locales as you wish. All of these examples are active by default:
|
6
|
+
# ActiveSupport::Inflector.inflections(:en) do |inflect|
|
7
|
+
# inflect.plural /^(ox)$/i, '\1en'
|
8
|
+
# inflect.singular /^(ox)en/i, '\1'
|
9
|
+
# inflect.irregular 'person', 'people'
|
10
|
+
# inflect.uncountable %w( fish sheep )
|
11
|
+
# end
|
12
|
+
|
13
|
+
# These inflection rules are supported but not enabled by default:
|
14
|
+
# ActiveSupport::Inflector.inflections(:en) do |inflect|
|
15
|
+
# inflect.acronym 'RESTful'
|
16
|
+
# end
|
@@ -0,0 +1,14 @@
|
|
1
|
+
# Be sure to restart your server when you modify this file.
|
2
|
+
|
3
|
+
# This file contains settings for ActionController::ParamsWrapper which
|
4
|
+
# is enabled by default.
|
5
|
+
|
6
|
+
# Enable parameter wrapping for JSON. You can disable this by setting :format to an empty array.
|
7
|
+
ActiveSupport.on_load(:action_controller) do
|
8
|
+
wrap_parameters format: [:json] if respond_to?(:wrap_parameters)
|
9
|
+
end
|
10
|
+
|
11
|
+
# To enable root element in JSON for ActiveRecord objects.
|
12
|
+
# ActiveSupport.on_load(:active_record) do
|
13
|
+
# self.include_root_in_json = true
|
14
|
+
# end
|