renalware-core 2.0.77 → 2.0.78

data/app/models/renalware/pathology/code_group_membership.rb

@@ -0,0 +1,19 @@
+# frozen_string_literal: true
+
+require_dependency "renalware/pathology"
+
+module Renalware
+  module Pathology
+    # An ObservationDescription can be a member of many groups (a set of descriptions used for
+    # displaying or printing a subset of context-specific results). Within each group,
+    # say, 'letters', a description might be in a sub group (which merely serves to pull results
+    # together in groups on the page for clarity) and within that group might have a position wich
+    # determines its order in the subgroup.
+    class CodeGroupMembership < ApplicationRecord
+      validates :position_within_subgroup, presence: true
+      validates :subgroup, presence: true
+      belongs_to :code_group
+      belongs_to :observation_description
+    end
+  end
+end

data/app/models/renalware/pathology/current_observation_set.rb

@@ -32,7 +32,7 @@ module Renalware
 
       def values_for_codes(codes)
         codes = Array(codes)
-        values.select{ |code, _| codes.include?(code) }
+        values.select { |code, _| codes.include?(code) }
       end
 
       def self.null_values_hash

data/app/models/renalware/pathology/observation_description.rb

@@ -5,10 +5,16 @@ require_dependency "renalware/pathology"
 module Renalware
   module Pathology
     class ObservationDescription < ApplicationRecord
+      belongs_to :measurement_unit
       has_many :observations,
                class_name: "Pathology::Observation",
-               inverse_of: :description
-      belongs_to :measurement_unit
+               inverse_of: :description,
+               dependent: :restrict_with_exception
+      has_many :code_group_memberships,
+               foreign_key: :observation_description_id,
+               dependent: :destroy
+      has_many :code_groups,
+               through: :code_group_memberships
 
       scope :in_display_order, lambda {
         where("display_group is not null and display_order is not null")

data/app/models/renalware/pathology/request_description.rb

@@ -9,7 +9,7 @@ module Renalware
       belongs_to :lab
       has_many :global_rule_sets, class_name: "::Renalware::Pathology::Requests::GlobalRuleSet"
       has_and_belongs_to_many :requests,
-        class_name: "::Renalware::Pathology::Requests::Request"
+                              class_name: "::Renalware::Pathology::Requests::Request"
 
       validates :lab, presence: true
 

data/app/models/renalware/pathology/requests/drug.rb

@@ -7,7 +7,7 @@ module Renalware
     module Requests
       class Drug < ActiveType::Record[Renalware::Drugs::Drug]
         has_and_belongs_to_many :drug_categories,
-          join_table: "pathology_requests_drugs_drug_categories"
+                                join_table: "pathology_requests_drugs_drug_categories"
       end
     end
   end

data/app/models/renalware/pathology/requests/patient_rule.rb

@@ -13,7 +13,7 @@ module Renalware
         belongs_to :patient, class_name: "::Renalware::Pathology::Patient"
         belongs_to :lab, class_name: "::Renalware::Pathology::Lab"
         has_and_belongs_to_many :requests,
-          class_name: "::Renalware::Pathology::Requests::Request"
+                                class_name: "::Renalware::Pathology::Requests::Request"
 
         validates :lab, presence: true
         validates :test_description, presence: true

data/app/models/renalware/pathology/requests/request.rb

@@ -14,9 +14,9 @@ module Renalware
         belongs_to :clinic, class_name: "::Renalware::Clinics::Clinic"
         belongs_to :consultant, class_name: "::Renalware::Pathology::Consultant"
         has_and_belongs_to_many :request_descriptions,
-          class_name: "::Renalware::Pathology::RequestDescription"
+                                class_name: "::Renalware::Pathology::RequestDescription"
         has_and_belongs_to_many :patient_rules,
-          class_name: "::Renalware::Pathology::Requests::PatientRule"
+                                class_name: "::Renalware::Pathology::Requests::PatientRule"
 
         validates :patient, presence: true
         validates :clinic, presence: true

data/app/models/renalware/patient.rb

@@ -156,7 +156,7 @@ module Renalware
     # TODO: Use a constant for the max number of local patient ids
     def upcase_local_patient_ids
       self.local_patient_id = local_patient_id.upcase if local_patient_id.present?
-      (2..5).each{ |index| upcase_local_patient_id(index) }
+      (2..5).each { |index| upcase_local_patient_id(index) }
     end
 
     def upcase_local_patient_id(index)

data/app/models/renalware/patients/patient_hospital_identifiers.rb

@@ -49,11 +49,11 @@ module Renalware
       # Renders all patients hospital numbers in the format e.g.
       # "KCH: X12344 QEH: 12123123 XXX: Xxxxx ..."
       def to_s
-        all.map{ |name, hosp_no| "#{name}: #{hosp_no}" }.join(" ")
+        all.map { |name, hosp_no| "#{name}: #{hosp_no}" }.join(" ")
       end
 
       def to_s_multiline
-        all.map{ |name, hosp_no| "#{name}: #{hosp_no}" }.join("<br>").html_safe
+        all.map { |name, hosp_no| "#{name}: #{hosp_no}" }.join("<br>").html_safe
       end
 
       # Returns true if the  patient has a hospital number at the requested hospital.

data/app/models/renalware/pd/apd/glucose_calculator.rb

@@ -63,7 +63,7 @@ module Renalware
         end
 
         def bags_having_glucose_strength(bags, strength)
-          bags.select{ |bag| bag.bag_type.glucose_strength == strength.to_sym }
+          bags.select { |bag| bag.bag_type.glucose_strength == strength.to_sym }
         end
       end
     end

data/app/models/renalware/pd/bag_type.rb

@@ -8,7 +8,7 @@ module Renalware
       acts_as_paranoid
       extend Enumerize
 
-      scope :ordered, ->{ order(manufacturer: :asc, description: :asc) }
+      scope :ordered, -> { order(manufacturer: :asc, description: :asc) }
 
       enumerize :glucose_strength, in: { not_applicable: 0, low: 1, medium: 2, high: 3 }
 

data/app/models/renalware/pd/capd_regime.rb

@@ -60,7 +60,7 @@ module Renalware
         end
 
         def daily_average
-          per_week_total = weekly_totals.inject(0.0){ |sum, volume| sum + volume }
+          per_week_total = weekly_totals.inject(0.0) { |sum, volume| sum + volume }
           per_week_total / 7.to_f
         end
       end

data/app/models/renalware/pd/peritonitis_episode_type_description.rb

@@ -6,7 +6,7 @@ module Renalware
   module PD
     class PeritonitisEpisodeTypeDescription < ApplicationRecord
       has_many :peritonitis_episode_types,
-                class_name: "PD::PeritonitisEpisodeType"
+               class_name: "PD::PeritonitisEpisodeType"
     end
   end
 end

data/app/models/renalware/pd/regime.rb

@@ -15,9 +15,9 @@ module Renalware
       has_many :bags, class_name: "Renalware::PD::RegimeBag"
       has_many :bag_types, through: :bags
       has_one :termination,
-               class_name: "RegimeTermination",
-               dependent: :delete,
-               inverse_of: :regime
+              class_name: "RegimeTermination",
+              dependent: :delete,
+              inverse_of: :regime
 
       accepts_nested_attributes_for :bags, allow_destroy: true
 

data/app/models/renalware/pd/regime_termination.rb

@@ -10,10 +10,10 @@ module Renalware
       belongs_to :regime, touch: true
 
       validates :terminated_on,
-        timeliness: {
-          type: :date,
-          on_or_after: ->(termination) { termination.regime.start_date }
-        }
+                timeliness: {
+                  type: :date,
+                  on_or_after: ->(termination) { termination.regime.start_date }
+                }
     end
   end
 end

data/app/models/renalware/problems/problem.rb

@@ -16,7 +16,7 @@ module Renalware
 
       scope :ordered, -> { order(position: :asc) }
       scope :with_notes, -> { includes(:notes) }
-      scope :with_patient, ->{ includes(:patient) }
+      scope :with_patient, -> { includes(:patient) }
 
       validates :patient, presence: true
       validates :description, presence: true

data/app/models/renalware/renal/aki_alert.rb

@@ -7,7 +7,7 @@ module Renalware
     class AKIAlert < ApplicationRecord
       include Accountable
       include PatientsRansackHelper
-      scope :ordered, ->{ order(created_at: :desc) }
+      scope :ordered, -> { order(created_at: :desc) }
       belongs_to :patient, class_name: "Renal::Patient", touch: true
       belongs_to :action, class_name: "Renal::AKIAlertAction"
       belongs_to :hospital_ward, class_name: "Hospitals::Ward"
@@ -15,8 +15,8 @@ module Renalware
       validates :max_aki, inclusion: 1..3, allow_nil: true
       alias_attribute :decided_by, :updated_by
 
-      scope :today, ->{ where(created_at: Time.zone.today.all_day) }
-      scope :hotlist, ->{ where(hotlist: true) }
+      scope :today, -> { where(created_at: Time.zone.today.all_day) }
+      scope :hotlist, -> { where(hotlist: true) }
 
       has_paper_trail class_name: "Renalware::Renal::Version", on: [:create, :update, :destroy]
 

data/app/models/renalware/reporting/audit.rb

@@ -8,7 +8,7 @@ module Renalware
       validates :name, presence: true
       validates :view_name, presence: true
 
-      scope :enabled, ->{ where(enabled: true) }
+      scope :enabled, -> { where(enabled: true) }
 
       def self.available_audit_materialized_views
         result = connection.execute("SELECT oid::regclass::text FROM pg_class

data/app/models/renalware/system/country.rb

@@ -9,7 +9,7 @@ module Renalware
       validates :alpha2, presence: true, uniqueness: true
       validates :alpha3, presence: true, uniqueness: true
 
-      default_scope ->{ order(position: :asc) }
+      default_scope -> { order(position: :asc) }
 
       def to_s
         name

data/app/models/renalware/system/download.rb

@@ -0,0 +1,22 @@
+# frozen_string_literal: true
+
+require_dependency "renalware/system"
+
+module Renalware
+  module System
+    class Download < ApplicationRecord
+      include Accountable
+      acts_as_paranoid
+      validates :name, presence: true, uniqueness: true
+      has_one_attached :file
+      validates :file, presence: true
+      validate :validate_presence_of_file_attachment
+
+      private
+
+      def validate_presence_of_file_attachment
+        errors[:file] << "Please specify a file to upload" unless file.attached?
+      end
+    end
+  end
+end

data/app/models/renalware/system/download_query.rb

@@ -0,0 +1,23 @@
+# frozen_string_literal: true
+
+require_dependency "renalware/system"
+
+module Renalware
+  module System
+    class DownloadQuery
+      attr_reader :query_params
+
+      def initialize(query_params)
+        @query_params = query_params || {}
+      end
+
+      def call
+        search.result.includes(:updated_by)
+      end
+
+      def search
+        @search ||= Download.order(view_count: :desc, name: :asc).ransack(query_params)
+      end
+    end
+  end
+end

data/app/models/renalware/system/message.rb

@@ -12,7 +12,7 @@ module Renalware
                 timeliness: { type: :datetime, allow_blank: true, after: :display_from }
       enumerize :severity, in: %i(default warning info success)
 
-      scope :active, lambda{
+      scope :active, lambda {
         where(
           "display_from <= ? and (display_until is null or display_until >= ?)",
           Time.zone.now,

data/app/models/renalware/transplants/donor_stage.rb

@@ -16,8 +16,8 @@ module Renalware
       validates :stage_status, presence: true
       validates :started_on, presence: true
 
-      scope :current, ->{ where(terminated_on: nil) }
-      scope :ordered, ->{ order(terminated_on: :desc, started_on: :desc) }
+      scope :current, -> { where(terminated_on: nil) }
+      scope :ordered, -> { order(terminated_on: :desc, started_on: :desc) }
     end
   end
 end

data/app/models/renalware/transplants/recipient_followup.rb

@@ -22,6 +22,7 @@ module Renalware
       has_document class_name: "Renalware::Transplants::RecipientFollowupDocument"
 
       validates :stent_removed_on, timeliness: { type: :date, allow_blank: true }
+      validates :graft_nephrectomy_on, timeliness: { type: :date, allow_blank: true }
       validates :transplant_failed_on, timeliness: { type: :date, allow_blank: true }
       validates :transplant_failed_on,
                 presence: true,

data/app/models/renalware/ukrdc/create_encrypted_patient_xml_files.rb

@@ -107,7 +107,7 @@ module Renalware
         logger.info("Files saved to #{summary.archive_folder}")
         logger.info "*** Summary ***"
         logger.info "Took #{summary.milliseconds_taken.to_i / 1000} seconds"
-        summary.results.map{ |key, value| logger.info("#{key}: #{value}") }
+        summary.results.map { |key, value| logger.info("#{key}: #{value}") }
       end
       # rubocop:enable Metrics/AbcSize
 

data/app/models/renalware/ukrdc/modality_code.rb

@@ -0,0 +1,14 @@
+# frozen_string_literal: true
+
+require_dependency "renalware/ukrdc"
+
+module Renalware
+  module UKRDC
+    # Represents a Renal Reg modality QBL or Text code and description
+    # e.g. (1) Haemodialysis
+    # TXT refers to Renal Reg Patient timeline information
+    # QBL refers to Renal Reg Patient monthy treatment history
+    class ModalityCode < ApplicationRecord
+    end
+  end
+end

data/app/models/renalware/ukrdc/transmission_log.rb

@@ -9,7 +9,7 @@ module Renalware
       validates :status, presence: true
       belongs_to :patient, class_name: "Renalware::Patient"
       enum status: [:undefined, :error, :unsent_no_change_since_last_send, :sent]
-      scope :ordered, ->{ order(sent_at: :asc) }
+      scope :ordered, -> { order(sent_at: :asc) }
 
       def self.with_logging(patient, request_uuid)
         log = new(patient: patient, sent_at: Time.zone.now, request_uuid: request_uuid)
@@ -25,7 +25,7 @@ module Renalware
       def self.formatted_exception(error)
         [
           "#{error.backtrace.first}: #{error.message} (#{error.class})",
-          error.backtrace.drop(1).map{ |line| "\t#{line}" }
+          error.backtrace.drop(1).map { |line| "\t#{line}" }
         ].join("\n")
       end
     end

data/app/models/renalware/user.rb

@@ -16,11 +16,11 @@ module Renalware
     validate :approval_with_roles, on: :update
     validates :professional_position, presence: {
       on: :update,
-      if: ->(user){ user.with_extended_validation }
+      if: ->(user) { user.with_extended_validation }
     }
     validates :signature, presence: {
       on: :update,
-      if: ->(user){ user.with_extended_validation }
+      if: ->(user) { user.with_extended_validation }
     }
 
     scope :unapproved, -> { where(approved: [nil, false]) }

data/app/policies/renalware/system/download_policy.rb

@@ -0,0 +1,21 @@
+# frozen_string_literal: true
+
+require_dependency "renalware/snippets"
+
+module Renalware
+  module System
+    class DownloadPolicy < BasePolicy
+      def new?
+        user_is_super_admin?
+      end
+
+      def create?
+        user_is_super_admin?
+      end
+
+      def destroy?
+        user_is_super_admin?
+      end
+    end
+  end
+end

data/app/presenters/renalware/hd/dashboard_presenter.rb

@@ -30,7 +30,7 @@ module Renalware
             .deleted
             .ordered
             .limit(3)
-            .for_patient(patient).map{ |prof| ProfilePresenter.new(prof) }
+            .for_patient(patient).map { |prof| ProfilePresenter.new(prof) }
         end
       end
 

data/app/presenters/renalware/hd/diary_presenter.rb

@@ -38,7 +38,7 @@ module Renalware
       end
 
       def each_station
-        stations.each_with_index{ |station, index| yield(station, index + 1) if block_given? }
+        stations.each_with_index { |station, index| yield(station, index + 1) if block_given? }
       end
 
       def each_day(diurnal_period, station)

data/app/presenters/renalware/hd/mdm_presenter.rb

@@ -16,7 +16,8 @@ module Renalware
         @sessions ||= begin
           sessions = Sessions::LatestPatientSessionsQuery
                        .new(patient: patient)
-                       .call(max_sessions: 6).includes(:patient, :hospital_unit)
+                       .call(max_sessions: 6)
+                       .includes(:patient, :hospital_unit, :signed_on_by, :signed_off_by)
           CollectionPresenter.new(sessions, SessionPresenter, view_context)
         end
       end

data/app/presenters/renalware/hd/profile_presenter.rb

@@ -26,7 +26,7 @@ module Renalware
       delegate :type,
                :loading_dose,
                :hourly_dose,
-                to: :anticoagulant, allow_nil: true, prefix: true
+               to: :anticoagulant, allow_nil: true, prefix: true
 
       delegate :unit_code,
                to: :hospital_unit, prefix: true, allow_nil: true
@@ -72,7 +72,7 @@ module Renalware
         ScheduleDefinition
           .includes(:diurnal_period)
           .ordered
-          .map{ |definition| [definition.to_s, definition.id] }
+          .map { |definition| [definition.to_s, definition.id] }
       end
 
       def last_update