renalware-core 2.0.64 → 2.0.67

data/db/migrate/20180306071308_remove_rogue_aki_alerts_column.rb

@@ -1,5 +1,7 @@
 class RemoveRogueAKIAlertsColumn < ActiveRecord::Migration[5.1]
   def change
-    remove_column :renal_aki_alerts, :renal_aki_alerts, :string
+    within_renalware_schema do
+      remove_column :renal_aki_alerts, :renal_aki_alerts, :string
+    end
   end
 end

data/db/migrate/20180306080518_add_state_tracking_cols_to_letters.rb

@@ -1,19 +1,21 @@
 class AddStateTrackingColsToLetters < ActiveRecord::Migration[5.1]
   def change
-    add_column :letter_letters, :submitted_for_approval_at, :datetime
-    add_reference :letter_letters,
-                  :submitted_for_approval_by,
-                  foreign_key: { to_table: :users },
-                  index: true
-    add_column :letter_letters, :approved_at, :datetime
-    add_reference :letter_letters,
-                  :approved_by,
-                  foreign_key: { to_table: :users },
-                  index: true
-    add_column :letter_letters, :completed_at, :datetime
-    add_reference :letter_letters,
-                  :completed_by,
-                  foreign_key: { to_table: :users },
-                  index: true
+    within_renalware_schema do
+      add_column :letter_letters, :submitted_for_approval_at, :datetime
+      add_reference :letter_letters,
+                    :submitted_for_approval_by,
+                    foreign_key: { to_table: :users },
+                    index: true
+      add_column :letter_letters, :approved_at, :datetime
+      add_reference :letter_letters,
+                    :approved_by,
+                    foreign_key: { to_table: :users },
+                    index: true
+      add_column :letter_letters, :completed_at, :datetime
+      add_reference :letter_letters,
+                    :completed_by,
+                    foreign_key: { to_table: :users },
+                    index: true
+    end
   end
 end

data/db/migrate/20180307191650_add_dwell_time_to_pd_regime.rb

@@ -1,5 +1,7 @@
 class AddDwellTimeToPDRegime < ActiveRecord::Migration[5.1]
   def change
-    add_column :pd_regimes, :dwell_time, :integer
+    within_renalware_schema do
+      add_column :pd_regimes, :dwell_time, :integer
+    end
   end
 end

data/db/migrate/20180307223111_create_system_visits_and_events.rb

@@ -1,44 +1,47 @@
+# rubocop:disable Rails/CreateTableWithTimestamps
 class CreateSystemVisitsAndEvents < ActiveRecord::Migration[5.1]
   def change
-   create_table :system_visits do |t|
-      t.string :visit_token
-      t.string :visitor_token
-
-      # the rest are recommended but optional
-      # simply remove any you don't want
-
-      # user
-      t.references :user, index: true
-
-      # standard
-      t.string :ip
-      t.text :user_agent
-      t.text :referrer
-      t.string :referring_domain
-      t.string :search_keyword
-      t.text :landing_page
-
-      # technology
-      t.string :browser
-      t.string :os
-      t.string :device_type
-
-      t.timestamp :started_at
+    within_renalware_schema do
+      create_table :system_visits do |t|
+        t.string :visit_token
+        t.string :visitor_token
+
+        # the rest are recommended but optional
+        # simply remove any you don't want
+
+        # user
+        t.references :user, index: true
+
+        # standard
+        t.string :ip
+        t.text :user_agent
+        t.text :referrer
+        t.string :referring_domain
+        t.string :search_keyword
+        t.text :landing_page
+
+        # technology
+        t.string :browser
+        t.string :os
+        t.string :device_type
+
+        t.timestamp :started_at
+      end
+
+      add_index :system_visits, [:visit_token], unique: true
+
+      create_table :system_events do |t|
+        t.references :visit
+        t.references :user, index: true
+        t.timestamp :time
+
+        t.string :name
+        t.jsonb :properties
+      end
+
+      add_index :system_events, [:name, :time]
+      add_index :system_events, "properties jsonb_path_ops", using: "gin"
     end
-
-    add_index :system_visits, [:visit_token], unique: true
-
-    create_table :system_events do |t|
-      t.references :visit
-      t.references :user, index: true
-      t.timestamp :time
-
-      t.string :name
-      t.jsonb :properties
-    end
-
-    add_index :system_events, [:name, :time]
-    add_index :system_events, "properties jsonb_path_ops", using: "gin"
   end
 end
-
+# rubocop:enable Rails/CreateTableWithTimestamps

data/db/migrate/20180309140316_add_unique_constraint_to_obr_requestor.rb

@@ -1,5 +1,7 @@
 class AddUniqueConstraintToObrRequestor < ActiveRecord::Migration[5.1]
   def change
-    add_index :pathology_observation_requests, :requestor_order_number, unique: true
+    within_renalware_schema do
+      add_index :pathology_observation_requests, :requestor_order_number, unique: true
+    end
   end
 end

data/db/migrate/20180311104609_remove_unique_obr_requestor_order_number_index.rb

@@ -1,6 +1,8 @@
 class RemoveUniqueObrRequestorOrderNumberIndex < ActiveRecord::Migration[5.1]
   def change
-    remove_index :pathology_observation_requests, :requestor_order_number # was unique
-    add_index :pathology_observation_requests, :requestor_order_number
+    within_renalware_schema do
+      remove_index :pathology_observation_requests, :requestor_order_number # was unique
+      add_index :pathology_observation_requests, :requestor_order_number
+    end
   end
 end

data/db/migrate/20180313114927_remove_deleted_at_from_admission_consults.rb

@@ -1,5 +1,7 @@
 class RemoveDeletedAtFromAdmissionConsults < ActiveRecord::Migration[5.1]
   def change
-    remove_column :admission_consults, :deleted_at, :datetime
+    within_renalware_schema do
+      remove_column :admission_consults, :deleted_at, :datetime
+    end
   end
 end

data/db/migrate/20180313124819_remove_tx_operation_constraints.rb

@@ -1,9 +1,11 @@
 class RemoveTxOperationConstraints < ActiveRecord::Migration[5.1]
   def change
-    change_column_null :transplant_recipient_operations, :theatre_case_start_time, true
-    change_column_null :transplant_recipient_operations, :donor_kidney_removed_from_ice_at, true
-    change_column_null :transplant_recipient_operations, :kidney_perfused_with_blood_at, true
-    change_column_null :transplant_recipient_operations, :warm_ischaemic_time, true
-    change_column_null :transplant_recipient_operations, :cold_ischaemic_time, true
+    within_renalware_schema do
+      change_column_null :transplant_recipient_operations, :theatre_case_start_time, true
+      change_column_null :transplant_recipient_operations, :donor_kidney_removed_from_ice_at, true
+      change_column_null :transplant_recipient_operations, :kidney_perfused_with_blood_at, true
+      change_column_null :transplant_recipient_operations, :warm_ischaemic_time, true
+      change_column_null :transplant_recipient_operations, :cold_ischaemic_time, true
+    end
   end
 end

data/db/migrate/20180319191942_create_function_to_sort_without_failing_on_nonnumerics.rb

@@ -1,9 +1,13 @@
 class CreateFunctionToSortWithoutFailingOnNonnumerics < ActiveRecord::Migration[5.1]
   def up
-    load_function("convert_to_float_v01.sql")
+    within_renalware_schema do
+      load_function("convert_to_float_v01.sql")
+    end
   end
 
   def down
-    connection.execute("drop function if exists convert_to_float(text)")
+    within_renalware_schema do
+      connection.execute("drop function if exists convert_to_float(text)")
+    end
   end
 end

data/db/migrate/20180323150241_update_path_obs_descs_for_letter_groupings.rb

@@ -1,27 +1,29 @@
 class UpdatePathObsDescsForLetterGroupings < ActiveRecord::Migration[5.1]
   def change
-    sql = <<-SQL.squish
-      UPDATE renalware.pathology_observation_descriptions set letter_group = NULL, letter_order = NULL;
-      UPDATE renalware.pathology_observation_descriptions set letter_group=1, letter_order=1 where code = 'HGB';
-      UPDATE renalware.pathology_observation_descriptions set letter_group=1, letter_order=2 where code = 'WBC';
-      UPDATE renalware.pathology_observation_descriptions set letter_group=1, letter_order=3 where code = 'PLT';
-      UPDATE renalware.pathology_observation_descriptions set letter_group=2, letter_order=1 where code = 'URE';
-      UPDATE renalware.pathology_observation_descriptions set letter_group=3, letter_order=1 where code = 'CRE';
-      UPDATE renalware.pathology_observation_descriptions set letter_group=3, letter_order=2 where code = 'EGFR';
-      UPDATE renalware.pathology_observation_descriptions set letter_group=4, letter_order=1 where code = 'NA';
-      UPDATE renalware.pathology_observation_descriptions set letter_group=4, letter_order=2 where code = 'POT';
-      UPDATE renalware.pathology_observation_descriptions set letter_group=5, letter_order=1 where code = 'BIC';
-      UPDATE renalware.pathology_observation_descriptions set letter_group=6, letter_order=1 where code = 'CCA';
-      UPDATE renalware.pathology_observation_descriptions set letter_group=6, letter_order=2 where code = 'PHOS';
-      UPDATE renalware.pathology_observation_descriptions set letter_group=7, letter_order=1 where code = 'PTHI';
-      UPDATE renalware.pathology_observation_descriptions set letter_group=8, letter_order=1  where code = 'ALB';
-      UPDATE renalware.pathology_observation_descriptions set letter_group=9, letter_order=1 where code = 'BIL';
-      UPDATE renalware.pathology_observation_descriptions set letter_group=9, letter_order=2 where code = 'AST';
-      UPDATE renalware.pathology_observation_descriptions set letter_group=9, letter_order=3 where code = 'ALP';
-      UPDATE renalware.pathology_observation_descriptions set letter_group=9, letter_order=4 where code = 'GGT';
-      UPDATE renalware.pathology_observation_descriptions set letter_group=10, letter_order=1 where code = 'HBA';
-      UPDATE renalware.pathology_observation_descriptions set letter_group=11, letter_order=1 where code = 'CHOL';
-    SQL
-    connection.execute(sql)
+    within_renalware_schema do
+      sql = <<-SQL.squish
+        UPDATE renalware.pathology_observation_descriptions set letter_group = NULL, letter_order = NULL;
+        UPDATE renalware.pathology_observation_descriptions set letter_group=1, letter_order=1 where code = 'HGB';
+        UPDATE renalware.pathology_observation_descriptions set letter_group=1, letter_order=2 where code = 'WBC';
+        UPDATE renalware.pathology_observation_descriptions set letter_group=1, letter_order=3 where code = 'PLT';
+        UPDATE renalware.pathology_observation_descriptions set letter_group=2, letter_order=1 where code = 'URE';
+        UPDATE renalware.pathology_observation_descriptions set letter_group=3, letter_order=1 where code = 'CRE';
+        UPDATE renalware.pathology_observation_descriptions set letter_group=3, letter_order=2 where code = 'EGFR';
+        UPDATE renalware.pathology_observation_descriptions set letter_group=4, letter_order=1 where code = 'NA';
+        UPDATE renalware.pathology_observation_descriptions set letter_group=4, letter_order=2 where code = 'POT';
+        UPDATE renalware.pathology_observation_descriptions set letter_group=5, letter_order=1 where code = 'BIC';
+        UPDATE renalware.pathology_observation_descriptions set letter_group=6, letter_order=1 where code = 'CCA';
+        UPDATE renalware.pathology_observation_descriptions set letter_group=6, letter_order=2 where code = 'PHOS';
+        UPDATE renalware.pathology_observation_descriptions set letter_group=7, letter_order=1 where code = 'PTHI';
+        UPDATE renalware.pathology_observation_descriptions set letter_group=8, letter_order=1  where code = 'ALB';
+        UPDATE renalware.pathology_observation_descriptions set letter_group=9, letter_order=1 where code = 'BIL';
+        UPDATE renalware.pathology_observation_descriptions set letter_group=9, letter_order=2 where code = 'AST';
+        UPDATE renalware.pathology_observation_descriptions set letter_group=9, letter_order=3 where code = 'ALP';
+        UPDATE renalware.pathology_observation_descriptions set letter_group=9, letter_order=4 where code = 'GGT';
+        UPDATE renalware.pathology_observation_descriptions set letter_group=10, letter_order=1 where code = 'HBA';
+        UPDATE renalware.pathology_observation_descriptions set letter_group=11, letter_order=1 where code = 'CHOL';
+      SQL
+      connection.execute(sql)
+    end
   end
 end

data/db/migrate/20180326155400_add_admin_notes_to_system_user_feedback.rb

@@ -1,6 +1,8 @@
 class AddAdminNotesToSystemUserFeedback < ActiveRecord::Migration[5.1]
   def change
-    add_column :system_user_feedback, :admin_notes, :text
-    add_column :system_user_feedback, :acknowledged, :boolean
+    within_renalware_schema do
+      add_column :system_user_feedback, :admin_notes, :text
+      add_column :system_user_feedback, :acknowledged, :boolean
+    end
   end
 end

data/db/migrate/20180327100423_add_constraints_to_recipient_operations.rb

@@ -1,5 +1,7 @@
 class AddConstraintsToRecipientOperations < ActiveRecord::Migration[5.1]
   def change
-    change_column_null(:transplant_recipient_operations, :patient_id, false)
+    within_renalware_schema do
+      change_column_null(:transplant_recipient_operations, :patient_id, false)
+    end
   end
 end

data/db/migrate/20180328210434_add_rrt_to_admission_consults.rb

@@ -1,5 +1,7 @@
 class AddRrtToAdmissionConsults < ActiveRecord::Migration[5.1]
   def change
-    add_column :admission_consults, :rrt, :boolean, default: false, null: false
+    within_renalware_schema do
+      add_column :admission_consults, :rrt, :boolean, default: false, null: false
+    end
   end
 end

data/db/migrate/20180419141524_add_cols_to_hd_patient_statistics.rb

@@ -1,10 +1,12 @@
 class AddColsToHDPatientStatistics < ActiveRecord::Migration[5.1]
   def change
-    add_column :hd_patient_statistics,
-               :pathology_snapshot,
-               :jsonb,
-               index: { using: :gin },
-               default: {},
-               null: false
+    within_renalware_schema do
+      add_column :hd_patient_statistics,
+                :pathology_snapshot,
+                :jsonb,
+                index: { using: :gin },
+                default: {},
+                null: false
+    end
   end
 end

data/db/migrate/20180422090043_update_hd_overall_audit_to_version_6.rb

@@ -1,90 +1,91 @@
-# rubocop:disable Metrics/MethodLength
 class UpdateHDOverallAuditToVersion6 < ActiveRecord::Migration[5.1]
   def change
-    update_view :reporting_hd_overall_audit,
-                materialized: true,
-                version: 6,
-                revert_to_version: 5
+    within_renalware_schema do
+      update_view :reporting_hd_overall_audit,
+                  materialized: true,
+                  version: 6,
+                  revert_to_version: 5
 
-    reversible do |direction|
-      direction.up do
-        connection.execute <<-SQL
-          update reporting_audits set display_configuration = '
-          {
-            "columnDefs": [
-              {
-                "title": "Unit",
-                "width": "300",
-                "data": "name"
-              },
-              {
-                "title": "Year",
-                "width": "100",
-                "data": "year"
-              },
-              {
-                "title": "Month",
-                "width": "100",
-                "data": "month"
-              },
-              {
-                "title": "No. patients",
-                "width": "100",
-                "data": "patient_count"
-              },
-              {
-                "title": "% HGB > 100",
-                "width": "120",
-                "data": "percentage_hgb_gt_100"
-              },
-              {
-                "title": "% HGB > 130",
-                "width": "120",
-                "data": "percentage_hgb_gt_130"
-              },
-              {
-                "title": "% Phosphate < 1.8",
-                "width": "120",
-                "data": "percentage_phosphate_lt_1_8"
-              },
-              {
-                "title": "% PTH < 300",
-                "width": "120",
-                "data": "percentage_pth_lt_300"
-              },
-              {
-                "title": "% URR > 64",
-                "width": "120",
-                "data": "percentage_urr_gt_64"
-              },
-              {
-                "title": "% URR > 69",
-                "width": "120",
-                "data": "percentage_urr_gt_69"
-              },
-              {
-                "title": "% w/fistula or graft",
-                "width": "120",
-                "data": "percentage_access_fistula_or_graft"
-              },
-              {
-                "title": "Avg. missed HD time",
-                "width": "120",
-                "data": "avg_missed_hd_time"
-              },
-              {
-                "title": "% sessions >5% dialysis time missed",
-                "width": "200",
-                "data": "pct_missed_sessions_gt_10_pct"
-              },
-              {
-                "title": "% missing >10% HD sessions",
-                "width": "150",
-                "data": "pct_shortfall_gt_5_pct"
-              }
-            ]
-          }' where view_name ='reporting_hd_overall_audit';
-        SQL
+      reversible do |direction|
+        direction.up do
+          connection.execute <<-SQL
+            update reporting_audits set display_configuration = '
+            {
+              "columnDefs": [
+                {
+                  "title": "Unit",
+                  "width": "300",
+                  "data": "name"
+                },
+                {
+                  "title": "Year",
+                  "width": "100",
+                  "data": "year"
+                },
+                {
+                  "title": "Month",
+                  "width": "100",
+                  "data": "month"
+                },
+                {
+                  "title": "No. patients",
+                  "width": "100",
+                  "data": "patient_count"
+                },
+                {
+                  "title": "% HGB > 100",
+                  "width": "120",
+                  "data": "percentage_hgb_gt_100"
+                },
+                {
+                  "title": "% HGB > 130",
+                  "width": "120",
+                  "data": "percentage_hgb_gt_130"
+                },
+                {
+                  "title": "% Phosphate < 1.8",
+                  "width": "120",
+                  "data": "percentage_phosphate_lt_1_8"
+                },
+                {
+                  "title": "% PTH < 300",
+                  "width": "120",
+                  "data": "percentage_pth_lt_300"
+                },
+                {
+                  "title": "% URR > 64",
+                  "width": "120",
+                  "data": "percentage_urr_gt_64"
+                },
+                {
+                  "title": "% URR > 69",
+                  "width": "120",
+                  "data": "percentage_urr_gt_69"
+                },
+                {
+                  "title": "% w/fistula or graft",
+                  "width": "120",
+                  "data": "percentage_access_fistula_or_graft"
+                },
+                {
+                  "title": "Avg. missed HD time",
+                  "width": "120",
+                  "data": "avg_missed_hd_time"
+                },
+                {
+                  "title": "% sessions >5% dialysis time missed",
+                  "width": "200",
+                  "data": "pct_missed_sessions_gt_10_pct"
+                },
+                {
+                  "title": "% missing >10% HD sessions",
+                  "width": "150",
+                  "data": "pct_shortfall_gt_5_pct"
+                }
+              ]
+            }' where view_name ='reporting_hd_overall_audit';
+          SQL
+        end
       end
     end
   end