renalware-core 2.0.159 → 2.0.164

data/spec/factories/events/events.rb

@@ -9,8 +9,7 @@ FactoryBot.define do
     description { "Needs blood sample taken." }
     notes { "Would like son to accompany them on clinic visit." }
 
-    factory :simple_event, class: "Renalware::Events::Simple" do
-    end
+    factory :simple_event, class: "Renalware::Events::Simple"
 
     factory :swab, class: "Renalware::Events::Swab" do
       event_type factory: :swab_event_type

data/spec/factories/letters/letters.rb

@@ -12,16 +12,9 @@ FactoryBot.define do
 
     author { accountable_actor }
 
-    factory :draft_letter, class: "Renalware::Letters::Letter::Draft" do
-    end
-
-    factory :pending_review_letter, class: "Renalware::Letters::Letter::PendingReview" do
-    end
-
-    factory :approved_letter, class: "Renalware::Letters::Letter::Approved" do
-    end
-
-    factory :completed_letter, class: "Renalware::Letters::Letter::Completed" do
-    end
+    factory :draft_letter, class: "Renalware::Letters::Letter::Draft"
+    factory :pending_review_letter, class: "Renalware::Letters::Letter::PendingReview"
+    factory :approved_letter, class: "Renalware::Letters::Letter::Approved"
+    factory :completed_letter, class: "Renalware::Letters::Letter::Completed"
   end
 end

data/spec/factories/medications/prescription_version.rb

@@ -1,6 +1,5 @@
 # frozen_string_literal: true
 
 FactoryBot.define do
-  factory :prescription_version, class: "Renalware::Medications::PrescriptionVersion" do
-  end
+  factory :prescription_version, class: "Renalware::Medications::PrescriptionVersion"
 end

data/spec/factories/patients/ethnicities.rb

@@ -5,7 +5,6 @@ FactoryBot.define do
     name { "White - British" }
     rr18_code { "A" }
 
-    trait :white_british do
-    end
+    trait :white_british
   end
 end

data/spec/factories/pd/bag_types.rb

@@ -2,8 +2,8 @@
 
 FactoryBot.define do
   factory :bag_type, class: "Renalware::PD::BagType" do
-    manufacturer { "Star Brand, Lucky Brand" }
-    description { "Green–2.34" }
+    manufacturer { "BagManufacturer" }
+    description { "BagDescription" }
     glucose_content { 2.8 }
     glucose_strength { :medium }
     amino_acid { true }

data/spec/factories/snippets/users.rb

@@ -1,6 +1,5 @@
 # frozen_string_literal: true
 
 FactoryBot.define do
-  factory :snippets_user, class: "Renalware::Snippets::User", parent: :user do
-  end
+  factory :snippets_user, class: "Renalware::Snippets::User", parent: :user
 end

data/spec/factories/transplants/recipient_followups.rb

@@ -1,6 +1,5 @@
 # frozen_string_literal: true
 
 FactoryBot.define do
-  factory :transplant_recipient_followup, class: "Renalware::Transplants::RecipientFollowup" do
-  end
+  factory :transplant_recipient_followup, class: "Renalware::Transplants::RecipientFollowup"
 end

data/spec/factories/virology/vaccination_types.rb

@@ -0,0 +1,8 @@
+# frozen_string_literal: true
+
+FactoryBot.define do
+  factory :vaccination_type, class: "Renalware::Virology::VaccinationType" do
+    code { "code" }
+    name { "name" }
+  end
+end

data/spec/factories/virology/vaccinations.rb

@@ -3,6 +3,6 @@
 FactoryBot.define do
   factory :vaccination, class: "Renalware::Virology::Vaccination" do
     event_type factory: :vaccination_event_type
-    document {}
+    document { {} }
   end
 end

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: renalware-core
 version: !ruby/object:Gem::Version
-  version: 2.0.159
+  version: 2.0.164
 platform: ruby
 authors:
 - Airslie
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2020-11-18 00:00:00.000000000 Z
+date: 2021-01-18 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: activerecord-import
@@ -310,14 +310,14 @@ dependencies:
     requirements:
     - - "~>"
       - !ruby/object:Gem::Version
-        version: 2.3.1
+        version: 2.4.0
   type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
     - - "~>"
       - !ruby/object:Gem::Version
-        version: 2.3.1
+        version: 2.4.0
 - !ruby/object:Gem::Dependency
   name: font-awesome-sass
   requirement: !ruby/object:Gem::Requirement
@@ -664,14 +664,14 @@ dependencies:
   name: puma
   requirement: !ruby/object:Gem::Requirement
     requirements:
-    - - "~>"
+    - - ">="
       - !ruby/object:Gem::Version
         version: '4.3'
   type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
-    - - "~>"
+    - - ">="
       - !ruby/object:Gem::Version
         version: '4.3'
 - !ruby/object:Gem::Dependency
@@ -1261,8 +1261,6 @@ files:
 - app/components/renalware/surveys/pos_s_component.rb
 - app/components/renalware/system/admin_menu_component.html.slim
 - app/components/renalware/system/admin_menu_component.rb
-- app/components/renalware/system/article_component.html.slim
-- app/components/renalware/system/article_component.rb
 - app/components/renalware/system/users_awaiting_approval_component.html.slim
 - app/components/renalware/system/users_awaiting_approval_component.rb
 - app/components/renalware/users/last_signin_component.html.slim
@@ -1458,6 +1456,13 @@ files:
 - app/controllers/renalware/virology/dashboards_controller.rb
 - app/controllers/renalware/virology/profiles_controller.rb
 - app/controllers/renalware/virology/vaccinations_controller.rb
+- app/documents/document/attribute_initializer.rb
+- app/documents/document/attribute_initializer/active_model.rb
+- app/documents/document/attribute_initializer/base.rb
+- app/documents/document/attribute_initializer/enum.rb
+- app/documents/document/base.rb
+- app/documents/document/embedded.rb
+- app/documents/document/enum.rb
 - app/documents/renalware/accesses/assessment_document.rb
 - app/documents/renalware/age.rb
 - app/documents/renalware/binary_marker.rb
@@ -1579,11 +1584,8 @@ files:
 - app/jobs/renalware/letters/save_rtf_letter_to_file_job.rb
 - app/jobs/renalware/reporting/refresh_audit_data_job.rb
 - app/mailers/renalware/admin/user_mailer.rb
-- app/mailers/renalware/letters/delivery/errors.rb
+- app/mailers/renalware/letters/delivery.rb
 - app/mailers/renalware/letters/delivery/practice_mailer.rb
-- app/mailers/renalware/previews/report_preview.rb
-- app/mailers/renalware/previews/ukrdc_summary_preview.rb
-- app/mailers/renalware/previews/user_mailer_preview.rb
 - app/mailers/renalware/reporting/report_mailer.rb
 - app/mailers/renalware/ukrdc/summary_mailer.rb
 - app/models/application_record.rb
@@ -1635,6 +1637,7 @@ files:
 - app/models/renalware/admissions/request_reason.rb
 - app/models/renalware/admissions/specialty.rb
 - app/models/renalware/api.rb
+- app/models/renalware/automatic_age_calculator.rb
 - app/models/renalware/clinical.rb
 - app/models/renalware/clinical/allergy.rb
 - app/models/renalware/clinical/allergy_status_form.rb
@@ -1674,12 +1677,14 @@ files:
 - app/models/renalware/drugs/type.rb
 - app/models/renalware/events.rb
 - app/models/renalware/events/advanced_care_plan.rb
+- app/models/renalware/events/alertable_events_query.rb
 - app/models/renalware/events/biopsy.rb
 - app/models/renalware/events/clinical_frailty_score.rb
 - app/models/renalware/events/create_event.rb
 - app/models/renalware/events/event.rb
 - app/models/renalware/events/event_list_query.rb
 - app/models/renalware/events/event_query.rb
+- app/models/renalware/events/event_type_alert_trigger.rb
 - app/models/renalware/events/investigation.rb
 - app/models/renalware/events/line_change_event_query.rb
 - app/models/renalware/events/lists/form.rb
@@ -2006,9 +2011,9 @@ files:
 - app/models/renalware/pd.rb
 - app/models/renalware/pd/adequacy_calculated_attributes.rb
 - app/models/renalware/pd/adequacy_result.rb
+- app/models/renalware/pd/apd.rb.dead
 - app/models/renalware/pd/apd/available_overnight_volume.rb
 - app/models/renalware/pd/apd/calculate_volumes.rb
-- app/models/renalware/pd/apd/exceptions.rb
 - app/models/renalware/pd/apd/glucose_calculator.rb
 - app/models/renalware/pd/apd/non_tidal_regime_calculations.rb
 - app/models/renalware/pd/apd/regime_calculations.rb
@@ -2047,6 +2052,7 @@ files:
 - app/models/renalware/problems/note.rb
 - app/models/renalware/problems/problem.rb
 - app/models/renalware/problems/version.rb
+- app/models/renalware/remembered_preferences.rb
 - app/models/renalware/renal.rb
 - app/models/renalware/renal/aki_alert.rb
 - app/models/renalware/renal/aki_alert_action.rb
@@ -2201,6 +2207,7 @@ files:
 - app/models/renalware/virology/patient.rb
 - app/models/renalware/virology/profile.rb
 - app/models/renalware/virology/vaccination.rb
+- app/models/renalware/virology/vaccination_type.rb
 - app/models/renalware/virology/version.rb
 - app/models/renalware/zip_archive.rb
 - app/pdfs/renalware/events/event_pdf.rb
@@ -2568,12 +2575,14 @@ files:
 - app/views/renalware/events/clinical_frailty_score/_cell.html.slim
 - app/views/renalware/events/clinical_frailty_score/_inputs.html.slim
 - app/views/renalware/events/clinical_frailty_score/_toggled_cell.html.slim
+- app/views/renalware/events/events/_alerts.html.slim
 - app/views/renalware/events/events/_event.html.slim
 - app/views/renalware/events/events/_filters.html.slim
 - app/views/renalware/events/events/_form.html.slim
 - app/views/renalware/events/events/_list.html.slim
 - app/views/renalware/events/events/_summary_part.html.slim
 - app/views/renalware/events/events/_table.html.slim
+- app/views/renalware/events/events/alert/_simple.html.slim
 - app/views/renalware/events/events/cell/_biopsy.html.slim
 - app/views/renalware/events/events/cell/_investigation.html.slim
 - app/views/renalware/events/events/cell/_simple.html.slim
@@ -3321,6 +3330,7 @@ files:
 - app/views/renalware/virology/dashboards/show.html.slim
 - app/views/renalware/virology/profiles/_summary.html.slim
 - app/views/renalware/virology/profiles/edit.html.slim
+- app/views/renalware/virology/vaccinations/_alert.html.slim
 - app/views/renalware/virology/vaccinations/_cell.html.slim
 - app/views/renalware/virology/vaccinations/_inputs.html.slim
 - app/views/renalware/virology/vaccinations/_list.html.slim
@@ -4072,6 +4082,8 @@ files:
 - db/migrate/20201023092859_remove_unused_indexes.rb
 - db/migrate/20201105153422_update_medication_current_prescriptions_view.rb
 - db/migrate/20201112152752_update_pd_mdm_patients_view1.rb
+- db/migrate/20210105163944_create_virology_vaccination_types.rb
+- db/migrate/20210115181817_create_event_type_alert_triggers.rb
 - db/seeds.rb
 - db/seeds/default/accesses/access_pd_catheter_insertion_techniques.csv
 - db/seeds/default/accesses/access_pd_catheter_insertion_techniques.rb
@@ -4163,6 +4175,8 @@ files:
 - db/seeds/default/ukrdc/modality_codes.csv
 - db/seeds/default/ukrdc/modality_codes.rb
 - db/seeds/default/ukrdc/seeds.rb
+- db/seeds/default/virology/seeds.rb
+- db/seeds/default/virology/vaccination_types.rb
 - db/seeds/seeds_helper.rb
 - db/triggers/feed_messages_preprocessing_trigger_v01.sql
 - db/triggers/update_current_observation_set_trigger_v01.sql
@@ -4229,7 +4243,7 @@ files:
 - lib/breadcrumb.rb
 - lib/collection_presenter.rb
 - lib/core_extensions/active_record/migration_helpers.rb
-- lib/core_extensions/active_support/duration.rb
+- lib/core_extensions/active_support/duration_additions.rb
 - lib/core_extensions/date.rb
 - lib/core_extensions/dumb_delegator.rb
 - lib/core_extensions/hash.rb
@@ -4237,35 +4251,25 @@ files:
 - lib/core_extensions/i18n/handle_blank_value.rb
 - lib/core_extensions/ox/element_additions.rb
 - lib/core_extensions/scenic.rb
-- lib/document/attribute_initializer.rb
-- lib/document/attribute_initializer/active_model.rb
-- lib/document/attribute_initializer/base.rb
-- lib/document/attribute_initializer/enum.rb
-- lib/document/base.rb
-- lib/document/embedded.rb
-- lib/document/enum.rb
 - lib/dropdown_button_item.rb
 - lib/duration_calculator.rb
+- lib/failure.rb
 - lib/git_commit_sha.rb
 - lib/gpg_encrypt_folder.rb
 - lib/hash_collection.rb
 - lib/inline_image.rb
+- lib/month_period.rb
 - lib/numeric_inclusion_validator.rb
 - lib/pandoc/templates/default.rtf
 - lib/renalware.rb
-- lib/renalware/automatic_age_calculator.rb
 - lib/renalware/configuration.rb
 - lib/renalware/engine.rb
-- lib/renalware/failure.rb
-- lib/renalware/month_period.rb
-- lib/renalware/remembered_preferences.rb
-- lib/renalware/service_result.rb
-- lib/renalware/success.rb
 - lib/renalware/version_number.rb
-- lib/renalware/week_period.rb
+- lib/service_result.rb
 - lib/smart_delegator.rb
 - lib/sql/indexed_case_stmt.rb
 - lib/subscription_registry.rb
+- lib/success.rb
 - lib/tasks/audit.rake
 - lib/tasks/bundler_audit.rake
 - lib/tasks/cucumber.rake
@@ -4282,8 +4286,7 @@ files:
 - lib/tasks/spec.rake
 - lib/tasks/ukrdc.rake
 - lib/templates/slim/scaffold/_form.html.slim
-- lib/test_support/ajax_helpers.rb
-- lib/test_support/text_editor_helpers.rb
+- lib/week_period.rb
 - spec/factories/accesses/assessments.rb
 - spec/factories/accesses/catheter_insertion_techniques.rb
 - spec/factories/accesses/patients.rb
@@ -4449,7 +4452,9 @@ files:
 - spec/factories/transplants/rejection_treatments.rb
 - spec/factories/ukrdc/modality_codes.rb
 - spec/factories/virology/patients.rb
+- spec/factories/virology/vaccination_types.rb
 - spec/factories/virology/vaccinations.rb
+- spec/support/ajax_helpers.rb
 - spec/support/capybara_helper.rb
 - spec/support/database_functions_spec_helper.rb
 - spec/support/date_helpers.rb
@@ -4473,6 +4478,7 @@ files:
 - spec/support/shared_examples/accountable_examples.rb
 - spec/support/shared_examples/paranoia_examples.rb
 - spec/support/shared_examples/supersedable_examples.rb
+- spec/support/text_editor_helpers.rb
 - spec/support/translations.rb
 - spec/support/travel.rb
 - spec/support/ukrdc_helpers.rb
@@ -4535,7 +4541,7 @@ required_rubygems_version: !ruby/object:Gem::Requirement
     - !ruby/object:Gem::Version
       version: '0'
 requirements: []
-rubygems_version: 3.0.3
+rubygems_version: 3.1.4
 signing_key: 
 specification_version: 4
 summary: Renalware core functionality as a mountable engine.

data/app/components/renalware/system/article_component.html.slim

@@ -1,3 +0,0 @@
-article
-  header
-    h1= title

data/app/components/renalware/system/article_component.rb

@@ -1,9 +0,0 @@
-# frozen_string_literal: true
-
-module Renalware
-  module System
-    # Experimental ActionView component
-    class AdminMenuComponent < ApplicationComponent
-    end
-  end
-end

data/app/mailers/renalware/previews/report_preview.rb

@@ -1,14 +0,0 @@
-# frozen_string_literal: true
-
-require_dependency "renalware/reporting"
-
-module Renalware
-  module Reporting
-    # Preview all emails at http://localhost:3000/rails/mailers
-    class ReportPreview < ActionMailer::Preview
-      def daily_summary
-        Reporting::ReportMailer.daily_summary
-      end
-    end
-  end
-end

data/app/mailers/renalware/previews/ukrdc_summary_preview.rb

@@ -1,20 +0,0 @@
-# frozen_string_literal: true
-
-require_dependency "renalware/reporting"
-
-module Renalware
-  module UKRDC
-    # Preview all emails at http://localhost:3000/rails/mailers
-    class SumaryPreview < ActionMailer::Preview
-      def daily_summary
-        summary = ExportSummary.new(
-          archive_folder: "/var/ukrdc/test",
-          num_changed_patients: 10,
-          milliseconds_taken: 123.0,
-          results: { sent: 1, unsent: 2 }
-        )
-        UKRDC::SummaryMailer.export_summary(summary: summary)
-      end
-    end
-  end
-end

data/app/mailers/renalware/previews/user_mailer_preview.rb

@@ -1,16 +0,0 @@
-# frozen_string_literal: true
-
-module Renalware
-  # Preview all emails at http://localhost:3000/rails/mailers
-  class Admin::UserMailerPreview < ActionMailer::Preview
-    def approval
-      user = User.first
-      Admin::UserMailer.approval(user)
-    end
-
-    def unexpiry
-      user = User.first
-      Admin::UserMailer.unexpiry(user)
-    end
-  end
-end

data/lib/renalware/failure.rb

@@ -1,6 +0,0 @@
-# frozen_string_literal: true
-
-module Renalware
-  class Failure < ServiceResult
-  end
-end

data/lib/renalware/month_period.rb

@@ -1,18 +0,0 @@
-# frozen_string_literal: true
-
-module Renalware
-  class MonthPeriod
-    attr_reader :month, :year, :start, :finish
-
-    def initialize(month:, year:)
-      @month = month
-      @year = year
-      @start = Time.new(year, month, 1, 0, 0, 0)
-      @finish = start.end_of_month.end_of_day
-    end
-
-    def to_range
-      start..finish
-    end
-  end
-end