renalware-core 2.0.151 → 2.0.157
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- checksums.yaml +4 -4
- data/app/assets/javascripts/renalware/components/navigation.js +0 -7
- data/app/assets/javascripts/renalware/components/sortable.js +3 -0
- data/app/assets/javascripts/renalware/core.js.erb +0 -2
- data/app/assets/javascripts/renalware/rollup_compiled.css +69147 -50289
- data/app/assets/javascripts/renalware/rollup_compiled.js +10 -14
- data/app/assets/stylesheets/renalware/base/_variables.scss +1 -0
- data/app/assets/stylesheets/renalware/lib/_foundation_and_overrides.scss +1 -620
- data/app/assets/stylesheets/renalware/lib/_select2-foundation5-overrides.scss +1 -1
- data/app/assets/stylesheets/renalware/modules/_medications.scss +9 -9
- data/app/assets/stylesheets/renalware/modules/_patients.scss +4 -0
- data/app/assets/stylesheets/renalware/modules/_users.scss +2 -1
- data/app/assets/stylesheets/renalware/partials/_forms.scss +11 -0
- data/app/assets/stylesheets/renalware/partials/_navigation.scss +15 -12
- data/app/assets/stylesheets/renalware/partials/_simple_form.scss +1 -1
- data/app/assets/stylesheets/renalware/partials/_tables.scss +15 -8
- data/app/assets/stylesheets/renalware/partials/_toggle.scss +0 -66
- data/app/assets/stylesheets/renalware/partials/_toggling.scss +18 -0
- data/app/assets/stylesheets/renalware/partials/_trix.scss +12 -0
- data/app/components/renalware/admissions/active_consult_alert_component.html.slim +4 -0
- data/app/components/renalware/admissions/active_consult_alert_component.rb +25 -0
- data/app/components/renalware/article_component.html.slim +5 -0
- data/app/components/renalware/article_component.rb +12 -0
- data/app/components/renalware/events/event_list_component.rb +6 -1
- data/app/components/renalware/medications/tabbed_prescriptions_list_component.html.slim +41 -0
- data/app/components/renalware/medications/tabbed_prescriptions_list_component.rb +47 -0
- data/app/components/renalware/patients/messages_component.html.slim +45 -0
- data/app/components/renalware/patients/messages_component.rb +52 -0
- data/app/components/renalware/pd/adequacy_results_component.html.slim +3 -5
- data/app/components/renalware/system/admin_menu_component.html.slim +3 -1
- data/app/components/renalware/users/last_signin_component.html.slim +3 -0
- data/app/components/renalware/users/last_signin_component.rb +23 -0
- data/app/controllers/renalware/admin/playgrounds_controller.rb +1 -1
- data/app/controllers/renalware/admin/users_controller.rb +1 -0
- data/app/controllers/renalware/drugs/drugs_controller.rb +4 -0
- data/app/controllers/renalware/hd/historical_profiles_controller.rb +1 -1
- data/app/controllers/renalware/medications/prescriptions_controller.rb +5 -2
- data/app/controllers/renalware/messaging/internal/messages_controller.rb +14 -5
- data/app/controllers/renalware/pathology/observation_descriptions_controller.rb +58 -0
- data/app/controllers/renalware/patients/mdms_controller.rb +104 -0
- data/app/controllers/renalware/system/view_metadata_controller.rb +61 -0
- data/app/controllers/renalware/users_controller.rb +25 -0
- data/app/helpers/renalware/application_helper.rb +2 -1
- data/app/helpers/renalware/drugs_helper.rb +6 -0
- data/app/helpers/renalware/layout_helper.rb +1 -1
- data/app/models/concerns/renalware/sortable.rb +49 -0
- data/app/models/renalware/accesses/patient.rb +2 -2
- data/app/models/renalware/accesses/plan.rb +1 -1
- data/app/models/renalware/admissions/request.rb +1 -0
- data/app/models/renalware/clinical/body_composition.rb +1 -1
- data/app/models/renalware/clinical/dry_weight.rb +1 -1
- data/app/models/renalware/clinics/clinic_visit.rb +5 -4
- data/app/models/renalware/feeds/files/create_feed_file.rb +1 -1
- data/app/models/renalware/hd/patient.rb +1 -1
- data/app/models/renalware/hd/preference_set.rb +1 -1
- data/app/models/renalware/hd/profile.rb +4 -4
- data/app/models/renalware/hd/schedule_definition.rb +1 -1
- data/app/models/renalware/hd/session.rb +2 -2
- data/app/models/renalware/hd/session_forms/batch_compile_pdfs.rb +1 -1
- data/app/models/renalware/hd/station.rb +2 -1
- data/app/models/renalware/letters/description.rb +2 -0
- data/app/models/renalware/letters/letter.rb +1 -1
- data/app/models/renalware/letters/part/prescriptions.rb +12 -3
- data/app/models/renalware/letters/pdf_letter_cache.rb +1 -1
- data/app/models/renalware/letters/printing/batch_compile_pdfs.rb +1 -1
- data/app/models/renalware/letters/recipient_params_processor.rb +1 -1
- data/app/models/renalware/medications/prescription.rb +0 -4
- data/app/models/renalware/messaging/internal/message_form.rb +1 -0
- data/app/models/renalware/messaging/internal/message_form_builder.rb +2 -1
- data/app/models/renalware/pathology/current_observations_for_descriptions_query.rb +3 -3
- data/app/models/renalware/pathology/measurement_unit.rb +13 -0
- data/app/models/renalware/pathology/observation_description.rb +23 -5
- data/app/models/renalware/pathology/observation_descriptions_by_code_query.rb +1 -1
- data/app/models/renalware/pathology/observation_requests_attributes_builder.rb +45 -5
- data/app/models/renalware/pathology/observations_within_date_range_query.rb +1 -1
- data/app/models/renalware/patient.rb +2 -2
- data/app/models/renalware/patients/bookmark.rb +2 -2
- data/app/models/renalware/patients/mdm_menu.rb +41 -0
- data/app/models/renalware/patients/mdm_patients_query.rb +1 -1
- data/app/models/renalware/patients/search_query.rb +1 -1
- data/app/models/renalware/patients/worry.rb +0 -1
- data/app/models/renalware/pd/mdm_patients_query.rb +1 -1
- data/app/models/renalware/problems/problem.rb +2 -1
- data/app/models/renalware/snippets/snippet_query.rb +1 -1
- data/app/models/renalware/surveys/question.rb +1 -2
- data/app/models/renalware/system/column_definition.rb +43 -0
- data/app/models/renalware/system/filter_definition.rb +29 -0
- data/app/models/renalware/system/update_user.rb +5 -0
- data/app/models/renalware/system/version.rb +11 -0
- data/app/models/renalware/system/view_metadata.rb +25 -0
- data/app/models/renalware/transplants/donation.rb +1 -1
- data/app/models/renalware/transplants/donor_followup.rb +0 -1
- data/app/models/renalware/transplants/failure_cause_description.rb +1 -1
- data/app/models/renalware/transplants/mdm_patients_query.rb +2 -2
- data/app/models/renalware/transplants/patient.rb +1 -1
- data/app/models/renalware/transplants/recipient_followup.rb +1 -3
- data/app/models/renalware/transplants/registration.rb +1 -3
- data/app/models/renalware/transplants/registrations/wait_list_query.rb +4 -4
- data/app/models/renalware/ukrdc/measurement_unit.rb +21 -0
- data/app/models/renalware/ukrdc/outgoing/rendering/lab_order.rb +30 -2
- data/app/models/renalware/ukrdc/paths.rb +1 -1
- data/app/models/renalware/ukrdc/treatment_timeline/prepare_tables.rb +1 -1
- data/app/models/renalware/ukrdc/treatment_timeline/remap_model_table_names_to_their_prepared_equivalents.rb +1 -1
- data/app/policies/application_policy.rb +1 -1
- data/app/policies/renalware/medications/prescription_policy.rb +35 -0
- data/app/policies/renalware/system/view_metadata_policy.rb +17 -0
- data/app/presenters/concerns/renalware/accountable_presentation.rb +33 -0
- data/app/presenters/renalware/clinics/visit_presenter.rb +11 -0
- data/app/presenters/renalware/events/event_presenter.rb +11 -0
- data/app/presenters/renalware/mdm_presenter.rb +11 -0
- data/app/presenters/renalware/pathology/results_presenter.rb +1 -2
- data/app/presenters/renalware/renal/clinical_summary_presenter.rb +9 -6
- data/app/views/renalware/admin/playgrounds/show.html.slim +2 -6
- data/app/views/renalware/admin/users/edit.html.slim +9 -0
- data/app/views/renalware/admin/users/index.html.slim +6 -0
- data/app/views/renalware/admissions/admissions/_filters.html.slim +8 -16
- data/app/views/renalware/clinical/allergies/_list.html.slim +3 -1
- data/app/views/renalware/dashboard/dashboards/show.html.slim +1 -0
- data/app/views/renalware/hd/protocols/_virology.html.slim +4 -5
- data/app/views/renalware/letters/letters/_form.html.slim +1 -1
- data/app/views/renalware/letters/parts/_prescriptions.html.slim +4 -0
- data/app/views/renalware/mdm/_prescriptions.html.slim +4 -13
- data/app/views/renalware/mdm/prescriptions/_table.html.slim +3 -1
- data/app/views/renalware/medications/prescriptions/_current_hd.html.slim +13 -0
- data/app/views/renalware/medications/prescriptions/_filter_form.html.slim +26 -13
- data/app/views/renalware/medications/prescriptions/_form.html.slim +3 -2
- data/app/views/renalware/medications/prescriptions/_options.html.slim +3 -3
- data/app/views/renalware/medications/prescriptions/_table.html.slim +5 -4
- data/app/views/renalware/medications/prescriptions/_tables.html.slim +13 -16
- data/app/views/renalware/medications/prescriptions/index.html.slim +5 -4
- data/app/views/renalware/messaging/internal/messages/_form.html.slim +3 -0
- data/app/views/renalware/messaging/internal/messages/index.html.slim +36 -0
- data/app/views/renalware/navigation/_mdms.html.slim +5 -0
- data/app/views/renalware/navigation/_renal.html.slim +1 -0
- data/app/views/renalware/navigation/{_super_admin.html.slim → _super_admin.html.slim.dead} +0 -0
- data/app/views/renalware/pathology/code_groups/edit.html.slim +5 -5
- data/app/views/renalware/pathology/code_groups/index.html.slim +4 -5
- data/app/views/renalware/pathology/code_groups/show.html.slim +25 -26
- data/app/views/renalware/pathology/observation_descriptions/_filters.html.slim +14 -0
- data/app/views/renalware/pathology/observation_descriptions/edit.html.slim +21 -0
- data/app/views/renalware/pathology/observation_descriptions/index.html.slim +38 -0
- data/app/views/renalware/pathology/requests/requests/request_form/_crs_form.html.slim +1 -1
- data/app/views/renalware/patients/alerts/_list.html.slim +1 -0
- data/app/views/renalware/patients/mdms/_filters.html.slim +38 -0
- data/app/views/renalware/patients/mdms/_table.html.slim +72 -0
- data/app/views/renalware/patients/mdms/show.html.slim +18 -0
- data/app/views/renalware/patients/side_menu/_general.html.slim +4 -0
- data/app/views/renalware/patients/worryboard/_filters.html.slim +18 -13
- data/app/views/renalware/pd/_peritonitis_episodes.html.slim +13 -13
- data/app/views/renalware/pd/adequacy_results/_form_fields.html.slim +1 -1
- data/app/views/renalware/pd/adequacy_results/_table.html.slim +2 -2
- data/app/views/renalware/pd/dashboards/show.html.slim +3 -3
- data/app/views/renalware/pd/dashboards/show/_page_actions.html.slim +9 -16
- data/app/views/renalware/pd/dashboards/show/_pet_adequacies.html.slim +1 -1
- data/app/views/renalware/pd/peritonitis_episodes/show.html.slim +8 -6
- data/app/views/renalware/shared/_fieldset.html.slim +1 -2
- data/app/views/renalware/shared/_magellan_block.html.slim +1 -2
- data/app/views/renalware/system/view_metadata/_columns_table.html.slim +44 -0
- data/app/views/renalware/system/view_metadata/_filters_form.html.slim +19 -0
- data/app/views/renalware/system/view_metadata/_versions.html.slim +23 -0
- data/app/views/renalware/system/view_metadata/edit.html.slim +66 -0
- data/app/views/renalware/transplants/mdm/_prescriptions.html.slim +6 -22
- data/app/views/renalware/users/_filters.html.slim +11 -0
- data/app/views/renalware/users/index.html.slim +24 -0
- data/config/initializers/core_extensions.rb +2 -2
- data/config/initializers/delayed_job.rb +1 -1
- data/config/initializers/inflections.rb +1 -0
- data/config/initializers/pagy.rb +5 -0
- data/config/locales/renalware/clinical/allergies.en.yml +1 -0
- data/config/locales/renalware/medications/tabbed_prescriptions_list_component.yml +15 -0
- data/config/locales/renalware/navigation/renal.en.yml +1 -0
- data/config/locales/renalware/patients/side_menu.en.yml +1 -0
- data/config/permissions.yml +1 -0
- data/config/routes.rb +1 -0
- data/config/routes/messaging.rb +9 -1
- data/config/routes/pathology.rb +1 -0
- data/config/routes/patients.rb +1 -0
- data/config/routes/system.rb +3 -0
- data/config/routes/users.rb +3 -0
- data/db/functions/convert_to_float_with_explicit_return_v01.sql +18 -0
- data/db/functions/update_current_observation_set_from_trigger_v05.sql +92 -0
- data/db/functions/update_pathology_observations_nresult_from_trigger_v01.sql +13 -0
- data/db/migrate/20200122182018_update_patient_current_modalities.rb +7 -0
- data/db/migrate/20200122182036_create_transplant_mdm_patients.rb +7 -0
- data/db/migrate/20200122190909_create_view_metadata.rb +44 -0
- data/db/migrate/20200131133223_create_hd_mdm_patients.rb +7 -0
- data/db/migrate/20200205185151_add_columns_to_system_view_metadata.rb +13 -0
- data/db/migrate/20200219113324_create_supportive_care_mdm_patients_view.rb +7 -0
- data/db/migrate/20200226145010_add_unique_indexes.rb +12 -11
- data/db/migrate/20200622120232_add_limits_to_path_obs_descriptions.rb +18 -0
- data/db/migrate/20200626081248_overload_convert_to_float_function.rb +13 -0
- data/db/migrate/20200626090256_add_nresult_to_pathology_observations.rb +29 -0
- data/db/migrate/20200628094228_add_prescriber_to_users.rb +14 -0
- data/db/migrate/20200812074223_add_public_flag_to_messages.rb +18 -0
- data/db/migrate/20200815150303_create_system_versions.rb +16 -0
- data/db/migrate/20200817085618_create_pd_mdm_patients.rb +7 -0
- data/db/migrate/20200817103930_create_low_clearance_mdm_patients.rb +7 -0
- data/db/migrate/20201001144512_update_fn_update_current_obs_set_triggerv05.rb +13 -0
- data/db/migrate/20201001145452_add_position_to_letter_descriptions.rb +5 -0
- data/db/migrate/20201009090959_make_drug_types_unique.rb +8 -0
- data/db/migrate/20201012160414_add_suggested_measurement_unit_to_pathology_observation_descriptions.rb +18 -0
- data/db/migrate/20201012171428_create_ukrdc_measurement_units.rb +18 -0
- data/db/migrate/20201015160542_add_position_to_drug_types.rb +31 -0
- data/db/migrate/20201020155510_add_bmi_to_clinic_visits.rb +31 -0
- data/db/migrate/20201020164524_update_pd_mdm_patients_view.rb +7 -0
- data/db/migrate/20201020170921_update_hd_mdm_patients_view.rb +7 -0
- data/db/migrate/20201020171139_update_low_clearance_mdm_patients_view.rb +7 -0
- data/db/migrate/20201021153832_update_supportive_care_mdm_patients_view.rb +7 -0
- data/db/migrate/20201021154809_update_transplant_mdm_patients_view.rb +7 -0
- data/db/migrate/20201023092859_remove_unused_indexes.rb +20 -0
- data/db/seeds/default/system/seeds.rb +1 -0
- data/db/seeds/default/system/view_metadata.rb +91 -0
- data/db/seeds/default/ukrdc/measurement_units.csv +12 -0
- data/db/seeds/default/ukrdc/measurement_units.rb +15 -0
- data/db/seeds/default/ukrdc/seeds.rb +1 -0
- data/db/triggers/update_pathology_observations_nresult_trigger_v01.sql +11 -0
- data/db/views/hd_mdm_patients_v01.sql +69 -0
- data/db/views/hd_mdm_patients_v02.sql +70 -0
- data/db/views/low_clearance_mdm_patients_v01.sql +38 -0
- data/db/views/low_clearance_mdm_patients_v02.sql +39 -0
- data/db/views/patient_current_modalities_v02.sql +18 -0
- data/db/views/pd_mdm_patients_v01.sql +42 -0
- data/db/views/pd_mdm_patients_v02.sql +43 -0
- data/db/views/supportive_care_mdm_patients_v01.sql +28 -0
- data/db/views/supportive_care_mdm_patients_v02.sql +29 -0
- data/db/views/transplant_mdm_patients_v01.sql +46 -0
- data/db/views/transplant_mdm_patients_v02.sql +47 -0
- data/lib/renalware/configuration.rb +2 -0
- data/lib/renalware/engine.rb +2 -2
- data/lib/renalware/version_number.rb +1 -2
- data/lib/tasks/db.rake +9 -0
- data/lib/tasks/pd.rake +28 -0
- data/spec/factories/drugs/drug_types.rb +5 -1
- data/spec/factories/messaging/internal/messages.rb +1 -0
- data/spec/factories/patients/practices.rb +1 -1
- data/spec/factories/patients/primary_care_physicians.rb +1 -1
- data/spec/factories/system/users.rb +1 -0
- data/spec/factories/system/view_metadata.rb +20 -0
- data/spec/support/capybara_helper.rb +2 -4
- data/spec/support/letters_spec_helper.rb +1 -1
- data/spec/support/matchers/validate_timeliness_of.rb +1 -1
- data/spec/support/pathology_spec_helper.rb +1 -2
- data/spec/support/policy_spec_helper.rb +12 -0
- data/vendor/assets/javascripts/foundation/foundation.alert.js +43 -0
- data/vendor/assets/javascripts/foundation/foundation.dropdown.js +468 -0
- data/vendor/assets/javascripts/foundation/foundation.js +727 -0
- data/vendor/assets/javascripts/foundation/foundation.reveal.js +522 -0
- data/vendor/assets/javascripts/foundation/foundation.tab.js +247 -0
- data/vendor/assets/javascripts/foundation/foundation.tooltip.js +348 -0
- data/vendor/assets/javascripts/foundation/foundation.topbar.js +458 -0
- data/vendor/assets/stylesheets/foundation/_functions.scss +156 -0
- data/vendor/assets/stylesheets/foundation/components/_alert-boxes.scss +128 -0
- data/vendor/assets/stylesheets/foundation/components/_buttons.scss +261 -0
- data/vendor/assets/stylesheets/foundation/components/_dropdown-buttons.scss +130 -0
- data/vendor/assets/stylesheets/foundation/components/_dropdown.scss +269 -0
- data/vendor/assets/stylesheets/foundation/components/_forms.scss +601 -0
- data/vendor/assets/stylesheets/foundation/components/_global.scss +566 -0
- data/vendor/assets/stylesheets/foundation/components/_grid.scss +292 -0
- data/vendor/assets/stylesheets/foundation/components/_labels.scss +106 -0
- data/vendor/assets/stylesheets/foundation/components/_pagination.scss +163 -0
- data/vendor/assets/stylesheets/foundation/components/_panels.scss +107 -0
- data/vendor/assets/stylesheets/foundation/components/_reveal.scss +212 -0
- data/vendor/assets/stylesheets/foundation/components/_side-nav.scss +120 -0
- data/vendor/assets/stylesheets/foundation/components/_split-buttons.scss +203 -0
- data/vendor/assets/stylesheets/foundation/components/_sub-nav.scss +125 -0
- data/vendor/assets/stylesheets/foundation/components/_tables.scss +135 -0
- data/vendor/assets/stylesheets/foundation/components/_tabs.scss +142 -0
- data/vendor/assets/stylesheets/foundation/components/_tooltips.scss +142 -0
- data/vendor/assets/stylesheets/foundation/components/_top-bar.scss +745 -0
- data/vendor/assets/stylesheets/foundation/components/_type.scss +525 -0
- data/vendor/assets/stylesheets/foundation/components/_visibility.scss +425 -0
- metadata +162 -64
- data/app/views/renalware/pd/infection_organisms/_edit.html.slim.obsolete +0 -16
- data/app/views/renalware/transplants/donor_operations/_sections_nav.html.slim +0 -11
- data/app/views/renalware/transplants/donor_workups/_sections_nav.html.slim +0 -15
- data/app/views/renalware/transplants/recipient_operations/_sections_nav.html.slim +0 -14
- data/app/views/renalware/transplants/recipient_workups/_sections_nav.html.slim +0 -15
- data/lib/core_extensions/active_record/sort.rb +0 -52
- data/spec/support/pages/accesses/procedure_page.rb +0 -53
- data/spec/support/pages/accesses/profile_page.rb +0 -45
- data/spec/support/pages/admissions/consults_page.rb +0 -26
- data/spec/support/pages/clinical/allergy_page.rb +0 -74
- data/spec/support/pages/clinical/profile_page.rb +0 -28
- data/spec/support/pages/hd/prescription_administration_dialog.rb +0 -132
- data/spec/support/pages/letters/form.rb +0 -63
- data/spec/support/pages/letters/mailshots/form.rb +0 -58
- data/spec/support/pages/letters/patient_letters.rb +0 -20
- data/spec/support/pages/low_clearance/profile_page.rb +0 -70
- data/spec/support/pages/medications/home_delivery_dialog.rb +0 -77
- data/spec/support/pages/medications/prescription_fom.rb +0 -62
- data/spec/support/pages/page_object.rb +0 -10
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CREATE OR REPLACE FUNCTION update_pathology_observations_nresult_from_trigger() RETURNS TRIGGER AS $body$
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DECLARE
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BEGIN
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IF (TG_OP = 'INSERT' OR TG_OP = 'UPDATE') THEN
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NEW.nresult = convert_to_float(NEW.result, NULL);
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END IF;
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RETURN NEW ;
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END $body$ LANGUAGE plpgsql;
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COMMENT ON FUNCTION update_pathology_observations_nresult_from_trigger() IS
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'Tries to coerce the result column into the nresult column as a float.
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Sets nresult to NULL if result is eg text and cannot be coerced.
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nresult is a performance optimisation useful for instance in graphing';
|
@@ -0,0 +1,44 @@
|
|
1
|
+
class CreateViewMetadata < ActiveRecord::Migration[5.2]
|
2
|
+
def change
|
3
|
+
enable_extension "hstore"
|
4
|
+
within_renalware_schema do
|
5
|
+
create_table(
|
6
|
+
:system_view_metadata,
|
7
|
+
comment: "Holds descriptive and layout data to help us construct "\
|
8
|
+
"data-driven parts of the Renalware UI e.g. MDMs"
|
9
|
+
) do |t|
|
10
|
+
t.text :schema_name, null: false
|
11
|
+
t.text :view_name, null: false
|
12
|
+
t.text :slug, comment: "May be used in urls - must be lower case with no spaces"
|
13
|
+
t.text :category, comment: "e.g. MDM"
|
14
|
+
t.text :scope, comment: "e.g. PD"
|
15
|
+
t.text :parent_name
|
16
|
+
t.references(
|
17
|
+
:parent,
|
18
|
+
index: true,
|
19
|
+
foreign_key: { to_table: :system_view_metadata },
|
20
|
+
comment: "Self-join in case a view should have children"
|
21
|
+
)
|
22
|
+
t.text :title, comment: "A label that may appear in the UI"
|
23
|
+
t.jsonb(
|
24
|
+
:columns,
|
25
|
+
comment: "Array of column_names. If empty, all cols displayed. "\
|
26
|
+
"Array order is the display order",
|
27
|
+
null: false,
|
28
|
+
default: []
|
29
|
+
)
|
30
|
+
t.jsonb(
|
31
|
+
:filters,
|
32
|
+
null: false,
|
33
|
+
default: [],
|
34
|
+
comment: "Array of filter definition for generating filters. " \
|
35
|
+
"Must be the name of a column in the SQL view. "
|
36
|
+
)
|
37
|
+
t.integer :position, null: false, default: 0
|
38
|
+
t.text :description, comment: "A description of the SQL view's function"
|
39
|
+
t.timestamps null: false
|
40
|
+
end
|
41
|
+
add_index :system_view_metadata, %i(category scope slug), unique: true
|
42
|
+
end
|
43
|
+
end
|
44
|
+
end
|
@@ -0,0 +1,13 @@
|
|
1
|
+
class AddColumnsToSystemViewMetadata < ActiveRecord::Migration[5.2]
|
2
|
+
def change
|
3
|
+
within_renalware_schema do
|
4
|
+
create_enum :system_view_display_type, %w(tabular)
|
5
|
+
create_enum :system_view_category, %w(mdm report)
|
6
|
+
remove_column :system_view_metadata, :category, :string
|
7
|
+
change_table :system_view_metadata do |t|
|
8
|
+
t.enum :display_type, enum_name: :system_view_display_type, default: :tabular, null: false
|
9
|
+
t.enum :category, enum_name: :system_view_category, default: :mdm, null: false
|
10
|
+
end
|
11
|
+
end
|
12
|
+
end
|
13
|
+
end
|
@@ -1,10 +1,6 @@
|
|
1
1
|
class AddUniqueIndexes < ActiveRecord::Migration[5.2]
|
2
2
|
def change
|
3
3
|
within_renalware_schema do
|
4
|
-
# Allow only one transplant_registration per patient
|
5
|
-
remove_index :transplant_registrations, :patient_id
|
6
|
-
add_index :transplant_registrations, :patient_id, unique: true
|
7
|
-
|
8
4
|
# Allow only one un-terminated transplant_registration_status per patient
|
9
5
|
# Removed this for now as the way we update the terminated_on in the model
|
10
6
|
# prevents us from enforcing this constraint atm.
|
@@ -17,13 +13,14 @@ class AddUniqueIndexes < ActiveRecord::Migration[5.2]
|
|
17
13
|
# )
|
18
14
|
|
19
15
|
# Allow only one current modality_modalities per patient
|
20
|
-
|
21
|
-
|
22
|
-
|
23
|
-
|
24
|
-
|
25
|
-
|
26
|
-
|
16
|
+
# Removed until we have had a change to housekeep the duplicates
|
17
|
+
# add_index(
|
18
|
+
# :modality_modalities,
|
19
|
+
# :patient_id,
|
20
|
+
# unique: true,
|
21
|
+
# where: "ended_on is null",
|
22
|
+
# name: :index_modality_modalities_on_patient_id_current
|
23
|
+
# )
|
27
24
|
|
28
25
|
# Removed this for now as prevents adding new profiles. Need to address holistically in
|
29
26
|
# a separate PR
|
@@ -38,6 +35,10 @@ class AddUniqueIndexes < ActiveRecord::Migration[5.2]
|
|
38
35
|
# name: :index_access_profiles_on_patient_id_current
|
39
36
|
# )
|
40
37
|
|
38
|
+
# Allow only one transplant_registration per patient
|
39
|
+
remove_index :transplant_registrations, :patient_id
|
40
|
+
add_index :transplant_registrations, :patient_id, unique: true
|
41
|
+
|
41
42
|
# Allow only one renal_profile per patient
|
42
43
|
remove_index :renal_profiles, :patient_id
|
43
44
|
add_index :renal_profiles, :patient_id, unique: true
|
@@ -0,0 +1,18 @@
|
|
1
|
+
class AddLimitsToPathObsDescriptions < ActiveRecord::Migration[5.2]
|
2
|
+
def change
|
3
|
+
within_renalware_schema do
|
4
|
+
add_column(
|
5
|
+
:pathology_observation_descriptions,
|
6
|
+
:lower_threshold,
|
7
|
+
:float,
|
8
|
+
comment: "Value below which a result can be seen as abnormal"
|
9
|
+
)
|
10
|
+
add_column(
|
11
|
+
:pathology_observation_descriptions,
|
12
|
+
:upper_threshold,
|
13
|
+
:float,
|
14
|
+
comment: "Value above which a result can be seen as abnormal"
|
15
|
+
)
|
16
|
+
end
|
17
|
+
end
|
18
|
+
end
|
@@ -0,0 +1,13 @@
|
|
1
|
+
class OverloadConvertToFloatFunction < ActiveRecord::Migration[5.2]
|
2
|
+
def up
|
3
|
+
within_renalware_schema do
|
4
|
+
load_function("convert_to_float_with_explicit_return_v01.sql")
|
5
|
+
end
|
6
|
+
end
|
7
|
+
|
8
|
+
def down
|
9
|
+
within_renalware_schema do
|
10
|
+
connection.execute("DROP FUNCTION renalware.convert_to_float(text, float)")
|
11
|
+
end
|
12
|
+
end
|
13
|
+
end
|
@@ -0,0 +1,29 @@
|
|
1
|
+
class AddNresultToPathologyObservations < ActiveRecord::Migration[5.2]
|
2
|
+
def change
|
3
|
+
within_renalware_schema do
|
4
|
+
add_column(
|
5
|
+
:pathology_observations,
|
6
|
+
:nresult,
|
7
|
+
:float,
|
8
|
+
index: false,
|
9
|
+
null: true,
|
10
|
+
comment: "The result column cast to a float, for ease of using graphing and claculations."\
|
11
|
+
"Will be null if the result has a text value that cannot be coreced into a number"
|
12
|
+
)
|
13
|
+
|
14
|
+
reversible do |direction|
|
15
|
+
direction.up do
|
16
|
+
load_function("update_pathology_observations_nresult_from_trigger_v01.sql")
|
17
|
+
load_trigger("update_pathology_observations_nresult_trigger_v01.sql")
|
18
|
+
end
|
19
|
+
direction.down do
|
20
|
+
connection.execute(
|
21
|
+
"DROP TRIGGER IF EXISTS update_pathology_observations_nresult_trigger "\
|
22
|
+
"ON pathology_observations; "\
|
23
|
+
"DROP FUNCTION IF EXISTS update_pathology_observations_nresult_from_trigger();"
|
24
|
+
)
|
25
|
+
end
|
26
|
+
end
|
27
|
+
end
|
28
|
+
end
|
29
|
+
end
|
@@ -0,0 +1,14 @@
|
|
1
|
+
class AddPrescriberToUsers < ActiveRecord::Migration[5.2]
|
2
|
+
def change
|
3
|
+
within_renalware_schema do
|
4
|
+
add_column(
|
5
|
+
:users,
|
6
|
+
:prescriber,
|
7
|
+
:boolean,
|
8
|
+
null: false,
|
9
|
+
default: false,
|
10
|
+
comment: "A user can only add or terminate a prescription if this is set to true"
|
11
|
+
)
|
12
|
+
end
|
13
|
+
end
|
14
|
+
end
|
@@ -0,0 +1,18 @@
|
|
1
|
+
class AddPublicFlagToMessages < ActiveRecord::Migration[5.2]
|
2
|
+
def change
|
3
|
+
within_renalware_schema do
|
4
|
+
add_column(
|
5
|
+
:messaging_messages,
|
6
|
+
:public,
|
7
|
+
:boolean,
|
8
|
+
null: false,
|
9
|
+
default: false,
|
10
|
+
comment: "If true, the message will be displayed on a patient's clinical summary and " \
|
11
|
+
"their messages page. If false (ie private), the message can only be viewed " \
|
12
|
+
"by the sender (in their sent messages) and by the recipients. " \
|
13
|
+
"New messages once this migration is run will always have public=true. "\
|
14
|
+
"Historical messages will remain private."
|
15
|
+
)
|
16
|
+
end
|
17
|
+
end
|
18
|
+
end
|
@@ -0,0 +1,16 @@
|
|
1
|
+
class CreateSystemVersions < ActiveRecord::Migration[5.2]
|
2
|
+
def change
|
3
|
+
within_renalware_schema do
|
4
|
+
create_table :system_versions do |t|
|
5
|
+
t.string :item_type, null: false
|
6
|
+
t.integer :item_id, null: false
|
7
|
+
t.string :event, null: false
|
8
|
+
t.string :whodunnit
|
9
|
+
t.jsonb :object
|
10
|
+
t.jsonb :object_changes
|
11
|
+
t.datetime :created_at
|
12
|
+
end
|
13
|
+
add_index :system_versions, [:item_type, :item_id]
|
14
|
+
end
|
15
|
+
end
|
16
|
+
end
|
@@ -0,0 +1,13 @@
|
|
1
|
+
class UpdateFnUpdateCurrentObsSetTriggerv05 < ActiveRecord::Migration[5.2]
|
2
|
+
def up
|
3
|
+
within_renalware_schema do
|
4
|
+
load_function("update_current_observation_set_from_trigger_v05.sql")
|
5
|
+
end
|
6
|
+
end
|
7
|
+
|
8
|
+
def down
|
9
|
+
within_renalware_schema do
|
10
|
+
load_function("update_current_observation_set_from_trigger_v04.sql")
|
11
|
+
end
|
12
|
+
end
|
13
|
+
end
|
@@ -0,0 +1,18 @@
|
|
1
|
+
class AddSuggestedMeasurementUnitToPathologyObservationDescriptions < ActiveRecord::Migration[5.2]
|
2
|
+
def change
|
3
|
+
within_renalware_schema do
|
4
|
+
add_column(
|
5
|
+
:pathology_observation_descriptions,
|
6
|
+
:suggested_measurement_unit_id,
|
7
|
+
:integer,
|
8
|
+
null: true
|
9
|
+
)
|
10
|
+
|
11
|
+
add_foreign_key(
|
12
|
+
:pathology_observation_descriptions,
|
13
|
+
:pathology_measurement_units,
|
14
|
+
column: :suggested_measurement_unit_id
|
15
|
+
)
|
16
|
+
end
|
17
|
+
end
|
18
|
+
end
|
@@ -0,0 +1,18 @@
|
|
1
|
+
class CreateUKRDCMeasurementUnits < ActiveRecord::Migration[5.2]
|
2
|
+
def change
|
3
|
+
within_renalware_schema do
|
4
|
+
create_table :ukrdc_measurement_units do |t|
|
5
|
+
t.string :name, null: false, index: :unique
|
6
|
+
t.string :description, null: true
|
7
|
+
t.timestamps null: false
|
8
|
+
end
|
9
|
+
|
10
|
+
add_reference(
|
11
|
+
:pathology_measurement_units,
|
12
|
+
:ukrdc_measurement_unit,
|
13
|
+
index: { name: "index_pathology_measurement_units_ukrdc_mu" },
|
14
|
+
null: true
|
15
|
+
)
|
16
|
+
end
|
17
|
+
end
|
18
|
+
end
|
@@ -0,0 +1,31 @@
|
|
1
|
+
class AddPositionToDrugTypes < ActiveRecord::Migration[5.2]
|
2
|
+
def change
|
3
|
+
within_renalware_schema do
|
4
|
+
add_column(
|
5
|
+
:drug_types,
|
6
|
+
:position,
|
7
|
+
:integer,
|
8
|
+
default: 0,
|
9
|
+
null: false,
|
10
|
+
index: true,
|
11
|
+
comment: "Controls display order"
|
12
|
+
)
|
13
|
+
add_column(
|
14
|
+
:drug_types,
|
15
|
+
:weighting,
|
16
|
+
:integer,
|
17
|
+
null: false,
|
18
|
+
default: 0,
|
19
|
+
comment: "More important drug types have a higher value so their colour trumps other "\
|
20
|
+
"types a drug might have."
|
21
|
+
)
|
22
|
+
add_column(
|
23
|
+
:drug_types,
|
24
|
+
:colour,
|
25
|
+
:string,
|
26
|
+
null: true,
|
27
|
+
comment: "A CSS colour e.f. '#A12A12'"
|
28
|
+
)
|
29
|
+
end
|
30
|
+
end
|
31
|
+
end
|
@@ -0,0 +1,31 @@
|
|
1
|
+
class AddBMIToClinicVisits < ActiveRecord::Migration[5.2]
|
2
|
+
def change
|
3
|
+
within_renalware_schema do
|
4
|
+
add_column(
|
5
|
+
:clinic_visits,
|
6
|
+
:bmi,
|
7
|
+
:decimal,
|
8
|
+
precision: 10,
|
9
|
+
scale: 1,
|
10
|
+
null: true,
|
11
|
+
comment: "Body Mass Index calculated using a before_save when the clinic visit is updated"
|
12
|
+
)
|
13
|
+
|
14
|
+
reversible do |direction|
|
15
|
+
direction.up do
|
16
|
+
# Update the bmi for existing clinic visits, but restrict to avoid generating a
|
17
|
+
# non-sense value in case height or weight were entered incorrectly.
|
18
|
+
# NB: height is in metres and weight in kg
|
19
|
+
connection.execute(
|
20
|
+
"update renalware.clinic_visits "\
|
21
|
+
"set bmi = round(((weight / height)::decimal / height::decimal), 1) "\
|
22
|
+
"where height > 0 and height < 3 and weight > 0 and weight < 500;"
|
23
|
+
)
|
24
|
+
end
|
25
|
+
direction.down do
|
26
|
+
# noop
|
27
|
+
end
|
28
|
+
end
|
29
|
+
end
|
30
|
+
end
|
31
|
+
end
|