renalware-core 2.0.149 → 2.0.156

data/db/migrate/20200616115709_add_height_weight_to_pd_adequacy_results.rb

@@ -0,0 +1,8 @@
+class AddHeightWeightToPDAdequacyResults < ActiveRecord::Migration[5.2]
+  def change
+    within_renalware_schema do
+      add_column :pd_adequacy_results, :height, :float
+      add_column :pd_adequacy_results, :weight, :float
+    end
+  end
+end

data/db/migrate/20200618144228_add_feature_flags_to_users.rb

@@ -0,0 +1,14 @@
+class AddFeatureFlagsToUsers < ActiveRecord::Migration[5.2]
+  def change
+    within_renalware_schema do
+      add_column(
+        :users,
+        :feature_flags,
+        :integer,
+        default: 0,
+        null: false,
+        comment: "OR'ed feature flag bits to enable experimental features for certain users"
+      )
+    end
+  end
+end

data/db/migrate/20200622120232_add_limits_to_path_obs_descriptions.rb

@@ -0,0 +1,18 @@
+class AddLimitsToPathObsDescriptions < ActiveRecord::Migration[5.2]
+  def change
+    within_renalware_schema do
+      add_column(
+        :pathology_observation_descriptions,
+        :lower_threshold,
+        :float,
+        comment: "Value below which a result can be seen as abnormal"
+      )
+      add_column(
+        :pathology_observation_descriptions,
+        :upper_threshold,
+        :float,
+        comment: "Value above which a result can be seen as abnormal"
+      )
+    end
+  end
+end

data/db/migrate/20200626081248_overload_convert_to_float_function.rb

@@ -0,0 +1,13 @@
+class OverloadConvertToFloatFunction < ActiveRecord::Migration[5.2]
+  def up
+    within_renalware_schema do
+      load_function("convert_to_float_with_explicit_return_v01.sql")
+    end
+  end
+
+  def down
+    within_renalware_schema do
+      connection.execute("DROP FUNCTION renalware.convert_to_float(text, float)")
+    end
+  end
+end

data/db/migrate/20200626090256_add_nresult_to_pathology_observations.rb

@@ -0,0 +1,29 @@
+class AddNresultToPathologyObservations < ActiveRecord::Migration[5.2]
+  def change
+    within_renalware_schema do
+      add_column(
+        :pathology_observations,
+        :nresult,
+        :float,
+        index: false,
+        null: true,
+        comment: "The result column cast to a float, for ease of using graphing and claculations."\
+                 "Will be null if the result has a text value that cannot be coreced into a number"
+      )
+
+      reversible do |direction|
+        direction.up do
+          load_function("update_pathology_observations_nresult_from_trigger_v01.sql")
+          load_trigger("update_pathology_observations_nresult_trigger_v01.sql")
+        end
+        direction.down do
+          connection.execute(
+            "DROP TRIGGER IF EXISTS update_pathology_observations_nresult_trigger "\
+            "ON pathology_observations; "\
+            "DROP FUNCTION IF EXISTS update_pathology_observations_nresult_from_trigger();"
+          )
+        end
+      end
+    end
+  end
+end

data/db/migrate/20200628094228_add_prescriber_to_users.rb

@@ -0,0 +1,14 @@
+class AddPrescriberToUsers < ActiveRecord::Migration[5.2]
+  def change
+    within_renalware_schema do
+      add_column(
+        :users,
+        :prescriber,
+        :boolean,
+        null: false,
+        default: false,
+        comment: "A user can only add or terminate a prescription if this is set to true"
+      )
+    end
+  end
+end

data/db/migrate/20200812074223_add_public_flag_to_messages.rb

@@ -0,0 +1,18 @@
+class AddPublicFlagToMessages < ActiveRecord::Migration[5.2]
+  def change
+    within_renalware_schema do
+      add_column(
+        :messaging_messages,
+        :public,
+        :boolean,
+        null: false,
+        default: false,
+        comment: "If true, the message will be displayed on a patient's clinical summary and " \
+                 "their messages page. If false (ie private), the message can only be viewed " \
+                 "by the sender (in their sent messages) and by the recipients. " \
+                 "New messages once this migration is run will always have public=true. "\
+                 "Historical messages will remain private."
+      )
+    end
+  end
+end

data/db/migrate/20200815150303_create_system_versions.rb

@@ -0,0 +1,16 @@
+class CreateSystemVersions < ActiveRecord::Migration[5.2]
+  def change
+    within_renalware_schema do
+      create_table :system_versions do |t|
+        t.string   :item_type, null: false
+        t.integer  :item_id,   null: false
+        t.string   :event,     null: false
+        t.string   :whodunnit
+        t.jsonb    :object
+        t.jsonb    :object_changes
+        t.datetime :created_at
+      end
+      add_index :system_versions, [:item_type, :item_id]
+    end
+  end
+end

data/db/migrate/20200817085618_create_pd_mdm_patients.rb

@@ -0,0 +1,7 @@
+class CreatePDMDMPatients < ActiveRecord::Migration[5.2]
+  def change
+    within_renalware_schema do
+      create_view :pd_mdm_patients
+    end
+  end
+end

data/db/migrate/20200817103930_create_low_clearance_mdm_patients.rb

@@ -0,0 +1,7 @@
+class CreateLowClearanceMDMPatients < ActiveRecord::Migration[5.2]
+  def change
+    within_renalware_schema do
+      create_view :low_clearance_mdm_patients
+    end
+  end
+end

data/db/migrate/20201001144512_update_fn_update_current_obs_set_triggerv05.rb

@@ -0,0 +1,13 @@
+class UpdateFnUpdateCurrentObsSetTriggerv05 < ActiveRecord::Migration[5.2]
+  def up
+    within_renalware_schema do
+      load_function("update_current_observation_set_from_trigger_v05.sql")
+    end
+  end
+
+  def down
+    within_renalware_schema do
+      load_function("update_current_observation_set_from_trigger_v04.sql")
+    end
+  end
+end

data/db/migrate/20201001145452_add_position_to_letter_descriptions.rb

@@ -0,0 +1,5 @@
+class AddPositionToLetterDescriptions < ActiveRecord::Migration[5.2]
+  def change
+    add_column :letter_descriptions, :position, :integer, default: 0, null: false, index: true
+  end
+end

data/db/migrate/20201009090959_make_drug_types_unique.rb

@@ -0,0 +1,8 @@
+class MakeDrugTypesUnique < ActiveRecord::Migration[5.2]
+  def change
+    within_renalware_schema do
+      add_index(:drug_types, :code, unique: true)
+      add_index(:drug_types, :name, unique: true)
+    end
+  end
+end

data/db/migrate/20201012160414_add_suggested_measurement_unit_to_pathology_observation_descriptions.rb

@@ -0,0 +1,18 @@
+class AddSuggestedMeasurementUnitToPathologyObservationDescriptions < ActiveRecord::Migration[5.2]
+  def change
+    within_renalware_schema do
+      add_column(
+        :pathology_observation_descriptions,
+        :suggested_measurement_unit_id,
+        :integer,
+        null: true
+      )
+
+      add_foreign_key(
+        :pathology_observation_descriptions,
+        :pathology_measurement_units,
+        column: :suggested_measurement_unit_id
+      )
+    end
+  end
+end

data/db/migrate/20201012171428_create_ukrdc_measurement_units.rb

@@ -0,0 +1,18 @@
+class CreateUKRDCMeasurementUnits < ActiveRecord::Migration[5.2]
+  def change
+    within_renalware_schema do
+      create_table :ukrdc_measurement_units do |t|
+        t.string :name, null: false, index: :unique
+        t.string :description, null: true
+        t.timestamps null: false
+      end
+
+      add_reference(
+        :pathology_measurement_units,
+        :ukrdc_measurement_unit,
+        index: { name: "index_pathology_measurement_units_ukrdc_mu" },
+        null: true
+      )
+    end
+  end
+end

data/db/migrate/20201015160542_add_position_to_drug_types.rb

@@ -0,0 +1,31 @@
+class AddPositionToDrugTypes < ActiveRecord::Migration[5.2]
+  def change
+    within_renalware_schema do
+      add_column(
+        :drug_types,
+        :position,
+        :integer,
+        default: 0,
+        null: false,
+        index: true,
+        comment: "Controls display order"
+      )
+      add_column(
+        :drug_types,
+        :weighting,
+        :integer,
+        null: false,
+        default: 0,
+        comment: "More important drug types have a higher value so their colour trumps other "\
+                 "types a drug might have."
+      )
+      add_column(
+        :drug_types,
+        :colour,
+        :string,
+        null: true,
+        comment: "A CSS colour e.f. '#A12A12'"
+      )
+    end
+  end
+end

data/db/migrate/20201020155510_add_bmi_to_clinic_visits.rb

@@ -0,0 +1,28 @@
+class AddBMIToClinicVisits < ActiveRecord::Migration[5.2]
+  def change
+    within_renalware_schema do
+      add_column(
+        :clinic_visits,
+        :bmi,
+        :decimal,
+        precision: 4,
+        scale: 1,
+        null: true,
+        comment: "Body Mass Index calculated using a before_save when the clinic visit is updated"
+      )
+
+      reversible do |direction|
+        direction.up do
+          connection.execute(
+            "update renalware.clinic_visits "\
+            "set bmi = round(((weight / height)::decimal / height::decimal), 1) "\
+            "where height > 0 and weight > 0;"
+          )
+        end
+        direction.down do
+          # noop
+        end
+      end
+    end
+  end
+end

data/db/migrate/20201020164524_update_pd_mdm_patients_view.rb

@@ -0,0 +1,7 @@
+class UpdatePDMDMPatientsView < ActiveRecord::Migration[5.2]
+  def change
+    within_renalware_schema do
+      update_view :pd_mdm_patients, version: 2, revert_to_version: 1
+    end
+  end
+end

data/db/migrate/20201020170921_update_hd_mdm_patients_view.rb

@@ -0,0 +1,7 @@
+class UpdateHDMDMPatientsView < ActiveRecord::Migration[5.2]
+  def change
+    within_renalware_schema do
+      update_view :hd_mdm_patients, version: 2, revert_to_version: 1
+    end
+  end
+end

data/db/migrate/20201020171139_update_low_clearance_mdm_patients_view.rb

@@ -0,0 +1,7 @@
+class UpdateLowClearanceMDMPatientsView < ActiveRecord::Migration[5.2]
+  def change
+    within_renalware_schema do
+      update_view :low_clearance_mdm_patients, version: 2, revert_to_version: 1
+    end
+  end
+end

data/db/migrate/20201021153832_update_supportive_care_mdm_patients_view.rb

@@ -0,0 +1,7 @@
+class UpdateSupportiveCareMDMPatientsView < ActiveRecord::Migration[5.2]
+  def change
+    within_renalware_schema do
+      update_view :supportive_care_mdm_patients, version: 2, revert_to_version: 1
+    end
+  end
+end

data/db/migrate/20201021154809_update_transplant_mdm_patients_view.rb

@@ -0,0 +1,7 @@
+class UpdateTransplantMDMPatientsView < ActiveRecord::Migration[5.2]
+  def change
+    within_renalware_schema do
+      update_view :transplant_mdm_patients, version: 2, revert_to_version: 1
+    end
+  end
+end

data/db/migrate/20201023092859_remove_unused_indexes.rb

@@ -0,0 +1,20 @@
+class RemoveUnusedIndexes < ActiveRecord::Migration[5.2]
+  def change
+    within_renalware_schema do
+      # Covered by index_admission_requests_on_patient_id_and_deleted_at
+      remove_index(:admission_requests, :patient_id)
+
+      # Covered by index_drug_homecare_forms_on_drug_type_id_and_supplier_id
+      remove_index(:drug_homecare_forms, :drug_type_id)
+
+      # Covered by survey_responses_compound_index (answered_on, patient_id, question_id)
+      remove_index(:survey_responses, :answered_on)
+
+      # Covered by idx_dashboard_component_position (dashboard_id, position)
+      remove_index(:system_dashboard_components, :dashboard_id)
+
+      # Covered by index_letter_mailshot_items_on_mailshot_id_and_letter_id
+      remove_index(:letter_mailshot_items, :mailshot_id)
+    end
+  end
+end

data/db/seeds/default/events/event_types.csv

@@ -6,3 +6,5 @@
 "PD Line Change",,"pd_line_changes"
 "Investigation","Renalware::Events::Investigation","investigations"
 "Vaccination","Renalware::Virology::Vaccination","vaccinations"
+"Advanced Care Plan","Renalware::Events::AdvancedCarePlan","advanced_care_plans"
+"Clinical Frailty Score","Renalware::Events::ClinicalFrailtyScore","clinical_frailty_score"

data/db/seeds/default/system/seeds.rb

@@ -3,3 +3,4 @@
 require_relative "./countries"
 require_relative "./roles"
 require_relative "./users"
+require_relative "./view_metadata"

data/db/seeds/default/system/view_metadata.rb

@@ -0,0 +1,91 @@
+# frozen_string_literal: true
+
+module Renalware
+  log "Adding View Metadata" do
+    Renalware::System::ViewMetadata.find_or_create_by!(
+      view_name: "transplant_mdm_patients",
+      scope: "transplant",
+      category: "mdm",
+      schema_name: "renalware"
+    ) do |view|
+      view.slug = "all"
+      view.title = "All"
+      view.position = 1
+      view.filters = [
+        { code: "sex", type: "list" },
+        { code: "tx_status", type: "list" },
+        { code: "on_worryboard", type: "list" },
+        { code: "tx_in_past_3m", type: "list" },
+        { code: "tx_in_past_12m", type: "list" },
+        { code: "patient_name", type: "search" }
+      ]
+      view.columns = [].to_json # empty will display all
+    end
+
+    Renalware::System::ViewMetadata.find_or_create_by!(
+      view_name: "hd_mdm_patients",
+      scope: "hd",
+      category: "mdm",
+      slug: "all",
+      schema_name: "renalware"
+    ) do |view|
+      view.title = "All"
+      view.position = 1
+      view.filters = [
+        { code: :schedule, type: :list },
+        { code: :hospital_unit, type: :list },
+        { code: :named_nurse, type: :list },
+        { code: :on_worryboard, type: :list }
+      ]
+      # schedule: :list,
+      # hospital_unit: :list,
+      # named_nurse: :list,
+      # on_worryboard: :list
+      view.columns = [].to_json # empty will display all
+    end
+
+    Renalware::System::ViewMetadata.find_or_create_by!(
+      view_name: "supportive_care_mdm_patients",
+      scope: "supportive_care",
+      category: "mdm",
+      slug: "all",
+      schema_name: "renalware"
+    ) do |view|
+      view.title = "All"
+      view.position = 1
+      view.filters = [{ code: :on_worryboard, type: :list }].to_json
+      view.columns = [].to_json
+    end
+
+    Renalware::System::ViewMetadata.find_or_create_by!(
+      view_name: "pd_mdm_patients",
+      scope: "pd",
+      category: "mdm",
+      slug: "all",
+      schema_name: "renalware"
+    ) do |view|
+      view.title = "All"
+      view.position = 1
+      view.filters = [{ code: :on_worryboard, type: :list }]
+      view.columns = [].to_json
+    end
+
+    Renalware::System::ViewMetadata.find_or_create_by!(
+      view_name: "low_clearance_mdm_patients",
+      scope: "low_clearance",
+      category: "mdm",
+      slug: "all",
+      schema_name: "renalware"
+    ) do |view|
+      view.title = "All"
+      view.position = 1
+      view.filters = [
+        { code: :on_worryboard, type: :list },
+        { code: :tx_candidate, type: :list },
+        { code: :hgb_range, type: :list },
+        { code: :urea_range, type: :list }
+      ]
+      view.columns = [].to_json
+    end
+  end
+end