renalware-core 2.0.132 → 2.0.133

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Files changed (88) hide show
  1. checksums.yaml +4 -4
  2. data/app/assets/javascripts/renalware/core.js.erb +1 -1
  3. data/app/assets/stylesheets/renalware/core.scss +1 -1
  4. data/app/assets/stylesheets/renalware/modules/_clinics.scss +1 -2
  5. data/app/assets/stylesheets/renalware/modules/_patients.scss +1 -1
  6. data/app/assets/stylesheets/renalware/partials/_dashboards.scss +15 -0
  7. data/app/components/renalware/application_component.rb +22 -0
  8. data/app/components/renalware/events/biopsies_component.html.slim +14 -0
  9. data/app/components/renalware/events/biopsies_component.rb +20 -0
  10. data/app/components/renalware/letters/letters_in_progress_component.html.slim +8 -0
  11. data/app/components/renalware/letters/letters_in_progress_component.rb +32 -0
  12. data/app/components/renalware/letters/unread_electronic_ccs_component.html.slim +7 -0
  13. data/app/components/renalware/letters/unread_electronic_ccs_component.rb +24 -0
  14. data/app/components/renalware/messaging/unread_messages_component.html.slim +11 -0
  15. data/app/components/renalware/messaging/unread_messages_component.rb +24 -0
  16. data/app/components/renalware/patients/bookmarks_component.html.slim +11 -0
  17. data/app/components/renalware/patients/bookmarks_component.rb +22 -0
  18. data/app/controllers/renalware/clinical/body_compositions_controller.rb +1 -1
  19. data/app/controllers/renalware/pathology/code_groups_controller.rb +44 -0
  20. data/app/controllers/renalware/transplants/wait_lists_controller.rb +17 -8
  21. data/app/models/renalware/clinical/body_composition.rb +7 -0
  22. data/app/models/renalware/hd/mdm_patients_query.rb +10 -1
  23. data/app/models/renalware/pathology/code_group.rb +10 -3
  24. data/app/models/renalware/pathology/code_group_membership.rb +2 -0
  25. data/app/models/renalware/pathology/current_observation_set.rb +16 -3
  26. data/app/models/renalware/pathology/observations_jsonb_serializer.rb +1 -1
  27. data/app/models/renalware/pathology/version.rb +11 -0
  28. data/app/models/renalware/system/component.rb +25 -0
  29. data/app/models/renalware/system/dashboard.rb +20 -0
  30. data/app/models/renalware/system/dashboard_component.rb +17 -0
  31. data/app/models/renalware/transplants.rb +8 -1
  32. data/app/models/renalware/transplants/registrations/wait_list_form.rb +16 -0
  33. data/app/models/renalware/transplants/registrations/wait_list_query.rb +17 -3
  34. data/app/models/renalware/ukrdc/incoming/file_list.rb +1 -1
  35. data/app/models/renalware/ukrdc/incoming/import_surveys.rb +16 -0
  36. data/app/models/renalware/ukrdc/outgoing/rendering/base.rb +22 -0
  37. data/app/models/renalware/ukrdc/outgoing/rendering/dialysis_session.rb +2 -2
  38. data/app/models/renalware/ukrdc/outgoing/rendering/hd_session_observations.rb +1 -1
  39. data/app/models/renalware/user.rb +9 -0
  40. data/app/policies/renalware/hd/closed_session_policy.rb +1 -1
  41. data/app/policies/renalware/pathology/code_group_policy.rb +23 -0
  42. data/app/presenters/renalware/hd/protocol_presenter.rb +8 -2
  43. data/app/views/renalware/clinical/body_compositions/_form.html.slim +6 -0
  44. data/app/views/renalware/clinical/body_compositions/_table.html.slim +4 -0
  45. data/app/views/renalware/dashboard/bookmarks/_bookmark.html.slim +5 -5
  46. data/app/views/renalware/dashboard/bookmarks/_table.html.slim +5 -5
  47. data/app/views/renalware/dashboard/dashboards/_content.html.slim +4 -41
  48. data/app/views/renalware/dashboard/letters/_letter.html.slim +2 -2
  49. data/app/views/renalware/hd/mdm_patients/_patient.html.slim +5 -1
  50. data/app/views/renalware/hd/mdm_patients/_table.html.slim +2 -1
  51. data/app/views/renalware/hd/protocols/_recent_pathology.html.slim +5 -12
  52. data/app/views/renalware/mdm/{_biopsies.html.slim → _biopsies.html.slim.dead} +0 -0
  53. data/app/views/renalware/mdm_patients/_patient.html.slim +5 -1
  54. data/app/views/renalware/mdm_patients/_table.html.slim +1 -1
  55. data/app/views/renalware/medications/prescriptions/_tables.html.slim +27 -23
  56. data/app/views/renalware/messaging/internal/receipts/_receipt.html.slim +1 -1
  57. data/app/views/renalware/modalities/modalities/index.html.slim +17 -16
  58. data/app/views/renalware/navigation/_super_admin.html.slim +1 -0
  59. data/app/views/renalware/pathology/code_groups/edit.html.slim +8 -0
  60. data/app/views/renalware/pathology/code_groups/index.html.slim +16 -0
  61. data/app/views/renalware/pathology/code_groups/show.html.slim +34 -0
  62. data/app/views/renalware/problems/problems/index.html.slim +9 -5
  63. data/app/views/renalware/surveys/_eq5d_summary_part.html.slim +17 -17
  64. data/app/views/renalware/surveys/_pos_s_summary_part.html.slim +61 -60
  65. data/app/views/renalware/transplants/mdm/_bottom.html.slim +1 -1
  66. data/app/views/renalware/transplants/mdm_patients/_patient.html.slim +5 -1
  67. data/app/views/renalware/transplants/mdm_patients/_table.html.slim +1 -1
  68. data/app/views/renalware/transplants/wait_lists/_registration.html.slim +1 -0
  69. data/app/views/renalware/transplants/wait_lists/show.html.slim +24 -1
  70. data/config/locales/renalware/clinical/body_composition.yml +4 -0
  71. data/config/routes/pathology.rb +1 -0
  72. data/db/migrate/20200114151225_add_clinical_body_composition_cols.rb +11 -0
  73. data/db/migrate/20200127165951_create_pathology_versions.rb +16 -0
  74. data/db/migrate/20200127170711_add_created_by_to_pathology_code_groups.rb +15 -0
  75. data/db/migrate/20200129093835_create_system_dashboards.rb +73 -0
  76. data/db/seeds/default/pathology/code_groups.rb +15 -0
  77. data/db/seeds/default/pathology/seeds.rb +2 -1
  78. data/lib/core_extensions/active_record/migration_helpers.rb +3 -2
  79. data/lib/renalware/engine.rb +1 -1
  80. data/lib/renalware/version.rb +1 -1
  81. data/lib/tasks/spec.rake +23 -21
  82. data/spec/factories/clinical/body_compositions.rb +3 -1
  83. data/spec/factories/pathology/code_group_memberships.rb +7 -0
  84. data/spec/factories/pathology/code_groups.rb +13 -0
  85. data/spec/factories/transplants/registration_status_descriptions.rb +5 -0
  86. data/spec/support/devise_spec_helper.rb +24 -8
  87. data/spec/support/ukrdc_helpers.rb +2 -1
  88. metadata +53 -24
@@ -3,13 +3,14 @@
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  module UKRDCSpecHelper
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  def remove_all_test_files
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  FileUtils.rm_r Dir.glob(paths.incoming.join("*.xml"))
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+ FileUtils.rm_r Dir.glob(paths.archive.join("*.xml"))
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  end
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  def copy_test_files_into_incoming_folder(paths:, num: 1, filename: "example.xml")
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  remove_all_test_files
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  source = file_fixture("ukrdc/incoming/#{filename}")
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  num.to_i.times do |idx|
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- destination = paths.incoming.join("#{idx}.xml")
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+ destination = paths.incoming.join("survey_#{idx}.xml")
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  FileUtils.cp(source, destination)
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  end
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  end
metadata CHANGED
@@ -1,14 +1,14 @@
1
1
  --- !ruby/object:Gem::Specification
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2
  name: renalware-core
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3
  version: !ruby/object:Gem::Version
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- version: 2.0.132
4
+ version: 2.0.133
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5
  platform: ruby
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  authors:
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  - Airslie
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  autorequire:
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  bindir: bin
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  cert_chain: []
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- date: 2020-01-14 00:00:00.000000000 Z
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+ date: 2020-02-03 00:00:00.000000000 Z
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  dependencies:
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  - !ruby/object:Gem::Dependency
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  name: actionview-component
@@ -16,14 +16,14 @@ dependencies:
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  requirements:
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  - - "~>"
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  - !ruby/object:Gem::Version
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- version: 1.6.1
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+ version: '1.7'
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  type: :runtime
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  prerelease: false
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  version_requirements: !ruby/object:Gem::Requirement
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  requirements:
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  - - "~>"
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  - !ruby/object:Gem::Version
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- version: 1.6.1
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+ version: '1.7'
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  - !ruby/object:Gem::Dependency
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  name: active_type
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  requirement: !ruby/object:Gem::Requirement
@@ -52,6 +52,20 @@ dependencies:
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  - - "~>"
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  - !ruby/object:Gem::Version
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  version: 0.28.0
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+ - !ruby/object:Gem::Dependency
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+ name: activerecord-postgres_enum
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+ requirement: !ruby/object:Gem::Requirement
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+ requirements:
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+ - - "~>"
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+ - !ruby/object:Gem::Version
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+ version: 0.6.0
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+ type: :runtime
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+ prerelease: false
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+ version_requirements: !ruby/object:Gem::Requirement
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+ requirements:
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+ - - "~>"
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+ - !ruby/object:Gem::Version
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+ version: 0.6.0
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  - !ruby/object:Gem::Dependency
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  name: ahoy_matey
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  requirement: !ruby/object:Gem::Requirement
@@ -464,14 +478,14 @@ dependencies:
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  requirements:
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  - - "~>"
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  - !ruby/object:Gem::Version
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- version: 1.1.1
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+ version: '1.1'
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  type: :runtime
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  prerelease: false
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  version_requirements: !ruby/object:Gem::Requirement
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  requirements:
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  - - "~>"
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  - !ruby/object:Gem::Version
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- version: 1.1.1
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+ version: '1.1'
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  - !ruby/object:Gem::Dependency
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  name: liquid
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  requirement: !ruby/object:Gem::Requirement
@@ -674,14 +688,14 @@ dependencies:
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  requirements:
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  - - "~>"
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  - !ruby/object:Gem::Version
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- version: 2.0.8
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+ version: '2.0'
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  type: :runtime
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  prerelease: false
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  version_requirements: !ruby/object:Gem::Requirement
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  requirements:
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  - - "~>"
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  - !ruby/object:Gem::Version
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- version: 2.0.8
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+ version: '2.0'
685
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  - !ruby/object:Gem::Dependency
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  name: rack-attack
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  requirement: !ruby/object:Gem::Requirement
@@ -710,20 +724,6 @@ dependencies:
710
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  - - ">="
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  - !ruby/object:Gem::Version
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  version: '5.2'
713
- - !ruby/object:Gem::Dependency
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- name: rails-assets-foundation-datepicker
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- requirement: !ruby/object:Gem::Requirement
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- requirements:
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- - - '='
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- - !ruby/object:Gem::Version
719
- version: 1.5.0
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- type: :runtime
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- prerelease: false
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- version_requirements: !ruby/object:Gem::Requirement
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- requirements:
724
- - - '='
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- - !ruby/object:Gem::Version
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- version: 1.5.0
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  - !ruby/object:Gem::Dependency
728
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  name: ransack
729
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  requirement: !ruby/object:Gem::Requirement
@@ -1126,6 +1126,7 @@ files:
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  - app/assets/stylesheets/renalware/partials/_clipboard.scss
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  - app/assets/stylesheets/renalware/partials/_clockpicker.scss
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  - app/assets/stylesheets/renalware/partials/_components.scss
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+ - app/assets/stylesheets/renalware/partials/_dashboards.scss
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  - app/assets/stylesheets/renalware/partials/_datepicker.scss
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  - app/assets/stylesheets/renalware/partials/_disabled_block.scss
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  - app/assets/stylesheets/renalware/partials/_document.scss
@@ -1156,6 +1157,17 @@ files:
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  - app/assets/stylesheets/renalware/protocol_pdf.scss
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  - app/assets/stylesheets/renalware/table_pdf.scss
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  - app/assets/stylesheets/renalware/watermark.scss
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+ - app/components/renalware/application_component.rb
1161
+ - app/components/renalware/events/biopsies_component.html.slim
1162
+ - app/components/renalware/events/biopsies_component.rb
1163
+ - app/components/renalware/letters/letters_in_progress_component.html.slim
1164
+ - app/components/renalware/letters/letters_in_progress_component.rb
1165
+ - app/components/renalware/letters/unread_electronic_ccs_component.html.slim
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+ - app/components/renalware/letters/unread_electronic_ccs_component.rb
1167
+ - app/components/renalware/messaging/unread_messages_component.html.slim
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+ - app/components/renalware/messaging/unread_messages_component.rb
1169
+ - app/components/renalware/patients/bookmarks_component.html.slim
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+ - app/components/renalware/patients/bookmarks_component.rb
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  - app/components/renalware/patients/side_menu_component.html.slim
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  - app/components/renalware/patients/side_menu_component.rb
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  - app/controllers/renalware/accesses/assessments_controller.rb
@@ -1258,6 +1270,7 @@ files:
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  - app/controllers/renalware/modalities/modalities_controller.rb
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  - app/controllers/renalware/modalities/reasons_controller.rb
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  - app/controllers/renalware/pathology/base_controller.rb
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+ - app/controllers/renalware/pathology/code_groups_controller.rb
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  - app/controllers/renalware/pathology/current_observation_results_controller.rb
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  - app/controllers/renalware/pathology/historical_observation_results_controller.rb
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  - app/controllers/renalware/pathology/observation_requests_controller.rb
@@ -1797,6 +1810,7 @@ files:
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  - app/models/renalware/pathology/requests/requests_factory.rb
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  - app/models/renalware/pathology/requests/sample_type.rb
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  - app/models/renalware/pathology/results.rb
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+ - app/models/renalware/pathology/version.rb
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  - app/models/renalware/pathology/view_observation_results.rb.dead
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  - app/models/renalware/patient.rb
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  - app/models/renalware/patients.rb
@@ -1916,7 +1930,10 @@ files:
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  - app/models/renalware/surveys/survey.rb
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  - app/models/renalware/system.rb
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  - app/models/renalware/system/api_log.rb
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+ - app/models/renalware/system/component.rb
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  - app/models/renalware/system/country.rb
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+ - app/models/renalware/system/dashboard.rb
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+ - app/models/renalware/system/dashboard_component.rb
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  - app/models/renalware/system/download.rb
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  - app/models/renalware/system/download_query.rb
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  - app/models/renalware/system/event.rb
@@ -1950,6 +1967,7 @@ files:
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  - app/models/renalware/transplants/registration.rb
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  - app/models/renalware/transplants/registration_status.rb
1952
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  - app/models/renalware/transplants/registration_status_description.rb
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+ - app/models/renalware/transplants/registrations/wait_list_form.rb
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  - app/models/renalware/transplants/registrations/wait_list_query.rb
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  - app/models/renalware/transplants/rejection_episode.rb
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  - app/models/renalware/transplants/rejection_treatment.rb
@@ -2068,6 +2086,7 @@ files:
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  - app/policies/renalware/messaging/internal/message_policy.rb
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  - app/policies/renalware/messaging/internal/receipt_policy.rb
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  - app/policies/renalware/modalities/description_policy.rb
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+ - app/policies/renalware/pathology/code_group_policy.rb
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  - app/policies/renalware/pathology/requests/global_rule_set_policy.rb
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  - app/policies/renalware/pathology/requests/request_policy.rb
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  - app/policies/renalware/patients/alert_policy.rb
@@ -2639,7 +2658,7 @@ files:
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  - app/views/renalware/low_clearance/mdm_patients/_tabs.html.slim
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  - app/views/renalware/low_clearance/profiles/_summary.html.slim
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  - app/views/renalware/low_clearance/profiles/edit.html.slim
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- - app/views/renalware/mdm/_biopsies.html.slim
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+ - app/views/renalware/mdm/_biopsies.html.slim.dead
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  - app/views/renalware/mdm/_clinic_visits.html.slim
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  - app/views/renalware/mdm/_events.html.slim
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  - app/views/renalware/mdm/_letters.html.slim
@@ -2723,6 +2742,9 @@ files:
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  - app/views/renalware/navigation/_user.html.slim
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  - app/views/renalware/pathology/_navigation.html.slim
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  - app/views/renalware/pathology/_observations_definition_list.html.slim
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+ - app/views/renalware/pathology/code_groups/edit.html.slim
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+ - app/views/renalware/pathology/code_groups/index.html.slim
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+ - app/views/renalware/pathology/code_groups/show.html.slim
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  - app/views/renalware/pathology/current_observation_results/index.html.slim
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  - app/views/renalware/pathology/historical_observation_results/_table.html.slim
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  - app/views/renalware/pathology/historical_observation_results/index.html.slim
@@ -3785,6 +3807,10 @@ files:
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  - db/migrate/20200106210851_create_case_insensitive_index_on_patients.rb
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  - db/migrate/20200110153522_add_ealert_to_admission_consults.rb
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  - db/migrate/20200110160241_create_admission_specialties.rb
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+ - db/migrate/20200114151225_add_clinical_body_composition_cols.rb
3811
+ - db/migrate/20200127165951_create_pathology_versions.rb
3812
+ - db/migrate/20200127170711_add_created_by_to_pathology_code_groups.rb
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+ - db/migrate/20200129093835_create_system_dashboards.rb
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  - db/seeds.rb
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  - db/seeds/default/accesses/access_pd_catheter_insertion_techniques.csv
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  - db/seeds/default/accesses/access_pd_catheter_insertion_techniques.rb
@@ -3818,6 +3844,7 @@ files:
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  - db/seeds/default/modalities/descriptions.rb
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  - db/seeds/default/modalities/reasons.rb
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  - db/seeds/default/modalities/seeds.rb
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+ - db/seeds/default/pathology/code_groups.rb
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  - db/seeds/default/pathology/measurement_units.csv
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  - db/seeds/default/pathology/measurement_units.rb
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  - db/seeds/default/pathology/seeds.rb
@@ -4056,6 +4083,8 @@ files:
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  - spec/factories/modalities/modalities.rb
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  - spec/factories/modalities/modality_descriptions.rb
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  - spec/factories/modalities/modality_reasons.rb
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+ - spec/factories/pathology/code_group_memberships.rb
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+ - spec/factories/pathology/code_groups.rb
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  - spec/factories/pathology/lab.rb
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  - spec/factories/pathology/measurement_units.rb
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  - spec/factories/pathology/observation_descriptions.rb
@@ -4201,7 +4230,7 @@ required_rubygems_version: !ruby/object:Gem::Requirement
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  - !ruby/object:Gem::Version
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  version: '0'
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  requirements: []
4204
- rubygems_version: 3.1.2
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+ rubygems_version: 3.0.3
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  signing_key:
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  specification_version: 4
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  summary: Renalware core functionality as a mountable engine.