renalware-core 2.0.0.pre.rc3 → 2.0.0.pre.rc4

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Files changed (281) hide show
  1. checksums.yaml +5 -5
  2. data/MIT-LICENSE +1 -1
  3. data/README.md +1 -0
  4. data/app/assets/images/renalware/chosen-sprite.png +0 -0
  5. data/app/assets/images/renalware/chosen-sprite@2x.png +0 -0
  6. data/app/assets/images/renalware/nhs_a4_letter_logo_black.png +0 -0
  7. data/app/assets/images/renalware/nhs_a4_letter_logo_blue.png +0 -0
  8. data/app/assets/javascripts/renalware/session_timeout_redirect.js.erb +3 -1
  9. data/app/assets/stylesheets/renalware/base/_variables.scss +2 -0
  10. data/app/assets/stylesheets/renalware/modules/_admissions.scss +21 -25
  11. data/app/assets/stylesheets/renalware/modules/_feeds.scss +27 -0
  12. data/app/assets/stylesheets/renalware/modules/_letters.scss +4 -0
  13. data/app/assets/stylesheets/renalware/modules/_patients.scss +18 -17
  14. data/app/assets/stylesheets/renalware/modules/_pd.scss +8 -0
  15. data/app/assets/stylesheets/renalware/partials/_lists.scss +3 -0
  16. data/app/assets/stylesheets/renalware/partials/_modal_window.scss +7 -1
  17. data/app/assets/stylesheets/renalware/partials/_navigation.scss +2 -2
  18. data/app/assets/stylesheets/renalware/partials/_tables.scss +20 -0
  19. data/app/assets/stylesheets/renalware/partials/_typography.scss +4 -0
  20. data/app/controllers/renalware/admin/feeds/files_controller.rb +49 -0
  21. data/app/controllers/renalware/admissions/admissions_controller.rb +101 -0
  22. data/app/controllers/renalware/admissions/patient_admissions_controller.rb +20 -0
  23. data/app/controllers/renalware/devise/sessions_controller.rb +29 -0
  24. data/app/controllers/renalware/letters/approved_letters_controller.rb +9 -1
  25. data/app/controllers/renalware/letters/contacts_controller.rb +29 -0
  26. data/app/controllers/renalware/low_clearance/base_controller.rb +13 -0
  27. data/app/controllers/renalware/low_clearance/dashboards_controller.rb +21 -0
  28. data/app/controllers/renalware/low_clearance/mdm_controller.rb +13 -0
  29. data/app/controllers/renalware/low_clearance/mdm_patients_controller.rb +27 -0
  30. data/app/controllers/renalware/low_clearance/profiles_controller.rb +45 -0
  31. data/app/controllers/renalware/patients/primary_care_physicians_controller.rb +4 -3
  32. data/app/controllers/renalware/pd/exit_site_infections_controller.rb +2 -1
  33. data/app/controllers/renalware/transplants/donor_workups_controller.rb +5 -2
  34. data/app/documents/renalware/low_clearance/profile_document.rb +26 -0
  35. data/app/documents/renalware/renal/profile_document.rb +0 -21
  36. data/app/helpers/renalware/application_helper.rb +5 -0
  37. data/app/helpers/renalware/attribute_name_helper.rb +0 -24
  38. data/app/helpers/renalware/infection_organisms_helper.rb +0 -20
  39. data/app/helpers/renalware/mdm_helper.rb +1 -1
  40. data/app/helpers/renalware/pd_regimes_helper.rb +1 -5
  41. data/app/mailers/renalware/admin/user_mailer.rb +1 -3
  42. data/app/mailers/renalware/letters/delivery/errors.rb +9 -0
  43. data/app/mailers/renalware/letters/delivery/practice_mailer.rb +55 -0
  44. data/app/mailers/{previews → renalware/previews}/user_mailer_preview.rb +0 -0
  45. data/app/models/concerns/renalware/feeds/job.rb +30 -0
  46. data/app/models/concerns/renalware/letters/letter_pathology.rb +31 -8
  47. data/app/models/concerns/renalware/patients_ransack_helper.rb +9 -9
  48. data/app/models/concerns/renalware/personable.rb +8 -3
  49. data/app/models/concerns/renalware/string_logging.rb +11 -0
  50. data/app/models/renalware/admissions/admission.rb +42 -0
  51. data/app/models/renalware/admissions/admission_query.rb +38 -0
  52. data/app/models/renalware/admissions/admission_search_form.rb +51 -0
  53. data/app/models/renalware/clinics/clinic_visit.rb +1 -0
  54. data/app/models/renalware/feeds/file.rb +31 -0
  55. data/app/models/renalware/feeds/file_type.rb +13 -0
  56. data/app/models/renalware/feeds/files/create_feed_file.rb +51 -0
  57. data/app/models/renalware/feeds/files/enqueue_file_for_background_processing.rb +18 -0
  58. data/app/models/renalware/feeds/files/exceptions.rb +12 -0
  59. data/app/models/renalware/feeds/files/file_upload_form.rb +24 -0
  60. data/app/models/renalware/feeds/files/import_job_factory.rb +15 -0
  61. data/app/models/renalware/feeds/files/practice_memberships/import_csv.rb +30 -0
  62. data/app/models/renalware/feeds/files/practice_memberships/import_job.rb +49 -0
  63. data/app/models/renalware/feeds/files/practices/convert_xml_to_csv.rb +145 -0
  64. data/app/models/renalware/feeds/files/practices/country_map.rb +33 -0
  65. data/app/models/renalware/feeds/files/practices/csv_file.rb +23 -0
  66. data/app/models/renalware/feeds/files/practices/csv_organisation.rb +35 -0
  67. data/app/models/renalware/feeds/files/practices/import_csv.rb +30 -0
  68. data/app/models/renalware/feeds/files/practices/import_job.rb +58 -0
  69. data/app/models/renalware/feeds/files/primary_care_physicians/import_csv.rb +28 -0
  70. data/app/models/renalware/feeds/files/primary_care_physicians/import_job.rb +44 -0
  71. data/app/models/renalware/feeds/files/tissue_typing/import.rb +12 -0
  72. data/app/models/renalware/feeds/hl7_message.rb +15 -0
  73. data/app/models/renalware/hd/sessions/auditable_session.rb +1 -1
  74. data/app/models/renalware/hospitals/unit.rb +2 -1
  75. data/app/models/renalware/hospitals/ward.rb +1 -1
  76. data/app/models/renalware/letters/approve_letter.rb +15 -9
  77. data/app/models/renalware/letters/delivery/deliver_letter.rb.dead +41 -0
  78. data/app/models/renalware/letters/delivery/delivery_policy.rb +28 -0
  79. data/app/models/renalware/letters/delivery/email_letter_to_practice.rb +46 -0
  80. data/app/models/renalware/letters/delivery/practice_email.rb +28 -0
  81. data/app/models/renalware/letters/draft_letter.rb +1 -1
  82. data/app/models/renalware/letters/part/recent_pathology_results.rb +43 -4
  83. data/app/models/renalware/letters/pdf_letter_cache.rb +2 -3
  84. data/app/models/renalware/letters/recipient_params_processor.rb +1 -1
  85. data/app/models/renalware/letters/relevant_observation_description.rb +2 -3
  86. data/app/models/renalware/letters/revise_letter.rb +3 -1
  87. data/app/models/renalware/letters.rb +3 -0
  88. data/app/models/renalware/low_clearance/mdm_patients_query.rb +62 -0
  89. data/app/models/renalware/low_clearance/modality_description.rb +11 -0
  90. data/app/models/renalware/low_clearance/patient.rb +14 -0
  91. data/app/models/renalware/low_clearance/profile.rb +15 -0
  92. data/app/models/renalware/low_clearance/version.rb +9 -0
  93. data/app/models/renalware/low_clearance.rb +15 -0
  94. data/app/models/renalware/patient.rb +3 -0
  95. data/app/models/renalware/patients/patient_hospital_identifiers.rb +8 -0
  96. data/app/models/renalware/patients/practice.rb +4 -1
  97. data/app/models/renalware/patients/practice_membership.rb +12 -0
  98. data/app/models/renalware/patients/primary_care_physician.rb +24 -5
  99. data/app/models/renalware/pd/exit_site_infection.rb +6 -0
  100. data/app/models/renalware/pd/regime_bag.rb +1 -1
  101. data/app/models/renalware/problems/note.rb +1 -1
  102. data/app/models/renalware/renal/registry/preflight_checks/deaths_query.rb +1 -1
  103. data/app/models/renalware/renal.rb +0 -4
  104. data/app/models/renalware/system/update_user.rb +1 -1
  105. data/app/models/renalware/transplants/recipient_operation.rb +3 -8
  106. data/app/models/renalware/user.rb +3 -3
  107. data/app/models/renalware/zip_archive.rb +48 -0
  108. data/app/policies/renalware/admissions/admission_policy.rb +8 -0
  109. data/app/policies/renalware/feeds/file_policy.rb +25 -0
  110. data/app/policies/renalware/letters/letter_policy.rb +2 -0
  111. data/app/policies/renalware/low_clearance/profile_policy.rb +13 -0
  112. data/app/presenters/renalware/admissions/admission_presenter.rb +49 -0
  113. data/app/presenters/renalware/dashboard/dashboard_presenter.rb +1 -1
  114. data/app/presenters/renalware/hd/session_access_presenter.rb +1 -1
  115. data/app/presenters/renalware/letters/letter_form_presenter.rb +1 -1
  116. data/app/presenters/renalware/letters/letter_presenter.rb +6 -1
  117. data/app/presenters/renalware/letters/practice_email_meta_data.rb +85 -0
  118. data/app/presenters/renalware/low_clearance/dashboard_presenter.rb +19 -0
  119. data/app/presenters/renalware/low_clearance/mdm_presenter.rb +12 -0
  120. data/app/presenters/renalware/pathology/observation_set_presenter.rb +1 -1
  121. data/app/presenters/renalware/pathology/observations_diff.rb +1 -1
  122. data/app/presenters/renalware/renal/clinical_summary_presenter.rb +17 -1
  123. data/app/validators/renalware/patients/height_validator.rb +17 -0
  124. data/app/views/renalware/admin/feeds/files/index.html.slim +61 -0
  125. data/app/views/renalware/admissions/admissions/_filters.html.slim +24 -0
  126. data/app/views/renalware/admissions/admissions/_form.html.slim +56 -0
  127. data/app/views/renalware/admissions/admissions/_table.html.slim +65 -0
  128. data/app/views/renalware/admissions/admissions/edit.html.slim +6 -0
  129. data/app/views/renalware/admissions/admissions/index.html.slim +12 -0
  130. data/app/views/renalware/admissions/admissions/new.html.slim +6 -0
  131. data/app/views/renalware/admissions/consults/_form.html.slim +2 -3
  132. data/app/views/renalware/admissions/consults/_table.html.slim +1 -3
  133. data/app/views/renalware/admissions/patient_admissions/index.html.slim +10 -0
  134. data/app/views/renalware/clinics/clinic_visits/_table.html.slim +2 -1
  135. data/app/views/renalware/clinics/clinic_visits/_table_row.html.slim +1 -0
  136. data/app/views/renalware/drugs/drugs/index.html.slim +3 -2
  137. data/app/views/renalware/hd/current_profile/_summary.html.slim +8 -8
  138. data/app/views/renalware/hd/diary_slots/_form.html.slim +4 -4
  139. data/app/views/renalware/hd/mdm_patients/_patient.html.slim +0 -1
  140. data/app/views/renalware/hd/protocols/_profile.html.slim +4 -4
  141. data/app/views/renalware/letters/contacts/_contact.html.slim +5 -1
  142. data/app/views/renalware/letters/contacts/_edit.html.slim +30 -0
  143. data/app/views/renalware/letters/contacts/_form.html.slim +1 -1
  144. data/app/views/renalware/letters/contacts/_table.html.slim +6 -5
  145. data/app/views/renalware/letters/contacts/edit.html.slim +8 -0
  146. data/app/views/renalware/letters/contacts/edit.js.erb +9 -0
  147. data/app/views/renalware/letters/contacts/index.html.slim +9 -3
  148. data/app/views/renalware/letters/contacts/index.js.erb +1 -1
  149. data/app/views/renalware/letters/contacts/update.js.erb +10 -0
  150. data/app/views/renalware/letters/delivery/practice_mailer/patient_letter.text.erb +3 -0
  151. data/app/views/renalware/letters/electronic_receipts/_table.html.slim +3 -1
  152. data/app/views/renalware/letters/electronic_receipts/sent.html.slim +6 -9
  153. data/app/views/renalware/letters/formatted_letters/_letter.html.slim +26 -13
  154. data/app/views/renalware/letters/letters/_cc_recipient_form.html.slim +1 -1
  155. data/app/views/renalware/letters/letters/_form.html.slim +0 -1
  156. data/app/views/renalware/letters/letters/_pathology.html.slim +1 -2
  157. data/app/views/renalware/letters/letters/_preview.html.slim +14 -5
  158. data/app/views/renalware/letters/parts/_clinical_observations.html.slim +2 -2
  159. data/app/views/renalware/letters/parts/_recent_pathology_results.html.slim +1 -7
  160. data/app/views/renalware/low_clearance/dashboards/_page_actions.html.slim +19 -0
  161. data/app/views/renalware/low_clearance/dashboards/show.html.slim +7 -0
  162. data/app/views/renalware/{renal/low_clearance → low_clearance}/mdm/_bottom.html.slim +0 -0
  163. data/app/views/renalware/{renal/low_clearance → low_clearance}/mdm/_low_clearance_profile.html.slim +0 -0
  164. data/app/views/renalware/{renal/low_clearance → low_clearance}/mdm/_top.html.slim +0 -0
  165. data/app/views/renalware/low_clearance/mdm_patients/_filters.html.slim +9 -0
  166. data/app/views/renalware/low_clearance/profiles/_summary.html.slim +125 -0
  167. data/app/views/renalware/low_clearance/profiles/edit.html.slim +39 -0
  168. data/app/views/renalware/medications/prescriptions/_table.html.slim +1 -1
  169. data/app/views/renalware/messaging/internal/receipts/_receipt.html.slim +2 -1
  170. data/app/views/renalware/messaging/internal/receipts/_sent_receipt.html.slim +3 -2
  171. data/app/views/renalware/messaging/internal/receipts/_sent_table.html.slim +2 -1
  172. data/app/views/renalware/messaging/internal/receipts/_table.html.slim +1 -0
  173. data/app/views/renalware/navigation/_mdms.html.slim +1 -1
  174. data/app/views/renalware/navigation/_patients_admin.html.slim +1 -0
  175. data/app/views/renalware/navigation/_renalware_admin.html.slim +12 -22
  176. data/app/views/renalware/patients/_side_menu.html.slim +0 -1
  177. data/app/views/renalware/patients/clinical_summaries/_admissions.html.slim +11 -0
  178. data/app/views/renalware/patients/clinical_summaries/show.html.slim +7 -0
  179. data/app/views/renalware/patients/primary_care_physicians/_form.html.slim +1 -3
  180. data/app/views/renalware/patients/primary_care_physicians/_primary_care_physician.html.slim +1 -3
  181. data/app/views/renalware/patients/primary_care_physicians/index.html.slim +0 -1
  182. data/app/views/renalware/patients/side_menu/_actions.html.slim +1 -1
  183. data/app/views/renalware/patients/side_menu/_general.html.slim +3 -0
  184. data/app/views/renalware/patients/side_menu/_modalities.html.slim +4 -0
  185. data/app/views/renalware/pd/_pet_adequacies.html.slim +1 -1
  186. data/app/views/renalware/pd/dashboards/show/_page_actions.html.slim +3 -1
  187. data/app/views/renalware/pd/exit_site_infections/_details.html.slim +6 -1
  188. data/app/views/renalware/pd/exit_site_infections/_fields.html.slim +7 -0
  189. data/app/views/renalware/pd/exit_site_infections/_form.html.slim +6 -7
  190. data/app/views/renalware/pd/regime_bags/_regime_bag.html.slim +1 -1
  191. data/app/views/renalware/pd/regime_bags/_regime_bags.html.slim +1 -1
  192. data/app/views/renalware/pd/regimes/_current_regime.html.slim +6 -1
  193. data/app/views/renalware/pd/regimes/_glucose.html.slim +1 -3
  194. data/app/views/renalware/renal/profiles/_form.html.slim +0 -21
  195. data/app/views/renalware/renal/profiles/show.html.slim +0 -5
  196. data/app/views/renalware/research/study_participants/_form.html.slim +2 -2
  197. data/app/views/renalware/shared/_attributes_list.html.slim +4 -4
  198. data/app/views/renalware/snippets/snippets/_table.html.slim +10 -5
  199. data/app/views/renalware/transplants/donations/_form.html.slim +6 -6
  200. data/app/views/renalware/transplants/live_donors/_filters.html.slim +5 -5
  201. data/app/views/renalware/transplants/recipient_dashboards/_page_actions.html.slim +5 -1
  202. data/config/cucumber.yml +2 -2
  203. data/config/initializers/client_side_validations.rb +8 -10
  204. data/config/initializers/devise_security_extension.rb +1 -1
  205. data/config/initializers/inflections.rb +6 -1
  206. data/config/initializers/renalware.rb +6 -6
  207. data/config/locales/renalware/admissions/admissions.yml +37 -0
  208. data/config/locales/renalware/clinics/visit.yml +3 -0
  209. data/config/locales/renalware/feeds/file.en.yml +17 -0
  210. data/config/locales/renalware/low_clearance/dashboard.en.yml +11 -0
  211. data/config/locales/renalware/low_clearance/low_clearance.en.yml +14 -0
  212. data/config/locales/renalware/low_clearance/profile.en.yml +71 -0
  213. data/config/locales/renalware/messaging/internal/messages.en.yml +3 -2
  214. data/config/locales/renalware/patients/side_menu.en.yml +2 -0
  215. data/config/locales/renalware/pd/dashboard.en.yml +1 -0
  216. data/config/locales/renalware/pd/exit_site_infection.en.yml +10 -0
  217. data/config/locales/renalware/renal/profile.en.yml +0 -46
  218. data/config/locales/renalware/transplants/recipient_dashboards.en.yml +1 -0
  219. data/config/routes.rb +19 -9
  220. data/db/migrate/20170523125610_add_esi_fields.rb +9 -0
  221. data/db/migrate/20170615130714_add_deleted_at_to_practices.rb +7 -0
  222. data/db/migrate/20170615144802_add_name_to_patient_primary_care_physicians.rb +9 -0
  223. data/db/migrate/20170620121255_create_patient_practice_memberships.rb +24 -0
  224. data/db/migrate/20170621102157_add_unique_index_on_practice_code.rb +6 -0
  225. data/db/migrate/20170627110058_create_feed_file_types.rb +15 -0
  226. data/db/migrate/20170627110619_create_feed_files.rb +20 -0
  227. data/db/migrate/20171009181615_add_columns_to_drug_drugs.rb +8 -0
  228. data/db/migrate/20171127082158_add_region_to_addresses.rb +5 -0
  229. data/db/migrate/20171127092158_create_function_to_import_practices.rb +123 -0
  230. data/db/migrate/20171127092359_create_fn_to_insert_gps.rb +145 -0
  231. data/db/migrate/20171206140738_create_fn_to_load_practice_memberships_csv.rb +62 -0
  232. data/db/migrate/20171211131918_remove_email_from_primary_care_physicians.rb +7 -0
  233. data/db/migrate/20171219154529_create_admission_admissions.rb +28 -0
  234. data/db/migrate/20171222153815_add_unique_constraint_to_patient_practice_memberships.rb +8 -0
  235. data/db/migrate/20180102155055_update_patient_summaries_to_version_5.rb +5 -0
  236. data/db/migrate/20180105132358_add_emailed_at_to_letter_recipients.rb +6 -0
  237. data/db/migrate/20180108185400_remove_null_constraint_from_letters_pathology_snapshot.rb +5 -0
  238. data/db/migrate/20180112151706_create_low_clearance_profiles.rb +49 -0
  239. data/db/migrate/20180112151813_create_low_clearance_versions.rb +14 -0
  240. data/db/seeds/default/feeds/import_file_types.rb +35 -0
  241. data/db/seeds/default/feeds/seeds.rb +1 -0
  242. data/db/seeds/default/modalities/descriptions.rb +1 -2
  243. data/db/seeds/default/practices/nhs_practices_sample.csv +26 -26
  244. data/db/seeds/default/practices/practices.rb +1 -2
  245. data/db/seeds/default/practices/primary_care_physicians.rb +3 -4
  246. data/db/seeds/default/practices/primary_care_physicians_sample.csv +193 -193
  247. data/db/seeds/default/seeds.rb +1 -0
  248. data/db/views/patient_summaries_v05.sql +17 -0
  249. data/lib/dropdown_button_item.rb +1 -1
  250. data/lib/renalware/configuration.rb +19 -1
  251. data/lib/renalware/engine.rb +6 -2
  252. data/lib/renalware/version.rb +1 -1
  253. data/lib/tasks/feeds/files.rake +34 -0
  254. data/lib/xml_parser.rb +84 -0
  255. data/spec/factories/admissions/admissions.rb +11 -0
  256. data/spec/factories/clinics/clinic_visits.rb +2 -2
  257. data/spec/factories/feeds/file.rb +14 -0
  258. data/spec/factories/feeds/file_types.rb +17 -0
  259. data/spec/factories/low_clearance/modality_descriptions.rb +8 -0
  260. data/spec/factories/low_clearance/patients.rb +3 -0
  261. data/spec/factories/low_clearance/profiles.rb +3 -0
  262. data/spec/factories/modalities/modality_descriptions.rb +1 -1
  263. data/spec/factories/patients/practice_memberships.rb +7 -0
  264. data/spec/factories/patients/primary_care_physicians.rb +2 -4
  265. data/spec/factories/system/users.rb +1 -1
  266. data/spec/support/factory_bot.rb +1 -1
  267. data/spec/support/shared_examples/paranoia_examples.rb +14 -0
  268. metadata +172 -40
  269. data/app/controllers/renalware/renal/low_clearance/mdm_controller.rb +0 -15
  270. data/app/controllers/renalware/renal/low_clearance/mdm_patients_controller.rb +0 -29
  271. data/app/helpers/renalware/section_helper.rb +0 -10
  272. data/app/models/renalware/renal/low_clearance/mdm_patients_query.rb +0 -64
  273. data/app/models/renalware/renal/low_clearance/modality_description.rb +0 -13
  274. data/app/presenters/renalware/renal/low_clearance/mdm_presenter.rb +0 -14
  275. data/app/views/renalware/renal/low_clearance/mdm_patients/_filters.html.slim +0 -9
  276. data/app/views/renalware/transplants/registrations/_sections_nav.html.slim +0 -15
  277. data/config/initializers/application_controller_renderer.rb +0 -13
  278. data/config/initializers/assets.rb +0 -10
  279. data/config/initializers/renalware_core.rb +0 -15
  280. data/config/locales/renalware/renal/low_clearance.en.yml +0 -15
  281. data/spec/factories/renal/lcc_modality_description.rb +0 -9
data/lib/xml_parser.rb ADDED
@@ -0,0 +1,84 @@
1
+ # rubocop:disable Metrics/PerceivedComplexity
2
+ # rubocop:disable Metrics/AbcSize
3
+ # -----
4
+ # From https://gist.github.com/kmile/827475
5
+ # A small DSL for helping parsing documents using Nokogiri::XML::Reader. The
6
+ # XML Reader is a good way to move a cursor through a (large) XML document fast,
7
+ # but is not as cumbersome as writing a full SAX document handler. Read about
8
+ # it here: http://nokogiri.org/Nokogiri/XML/Reader.html
9
+ #
10
+ # Just pass the reader in this parser and specify the nodes that you are interested
11
+ # in in a block. You can just parse every node or only look inside certain nodes.
12
+ #
13
+ # A small example:
14
+ #
15
+ # Xml::Parser.new(Nokogiri::XML::Reader(open(file))) do
16
+ # inside_element 'User' do
17
+ # for_element 'Name' do puts "Username: #{inner_xml}" end
18
+ # for_element 'Email' do puts "Email: #{inner_xml}" end
19
+ #
20
+ # for_element 'Address' do
21
+ # puts 'Start of address:'
22
+ # inside_element do
23
+ # for_element 'Street' do puts "Street: #{inner_xml}" end
24
+ # for_element 'Zipcode' do puts "Zipcode: #{inner_xml}" end
25
+ # for_element 'City' do puts "City: #{inner_xml}" end
26
+ # end
27
+ # puts 'End of address'
28
+ # end
29
+ # end
30
+ # end
31
+ #
32
+ # It does NOT fail on missing tags, and does not guarantee order of execution. It parses
33
+ # every tag regardless of nesting. The only way to guarantee scope is by using
34
+ # the `inside_element` method. This limits the parsing to the current or the named tag.
35
+ # If tags are encountered multiple times, their blocks will be called multiple times.
36
+
37
+ require "nokogiri"
38
+
39
+ class XmlParser
40
+ def initialize(node, &block)
41
+ @node = node
42
+ @node.each do
43
+ self.instance_eval(&block)
44
+ end
45
+ end
46
+
47
+ def name
48
+ @node.name
49
+ end
50
+
51
+ def inner_xml
52
+ @node.inner_xml.strip
53
+ end
54
+
55
+ def is_start?
56
+ @node.node_type == Nokogiri::XML::Reader::TYPE_ELEMENT
57
+ end
58
+
59
+ def is_end?
60
+ @node.node_type == Nokogiri::XML::Reader::TYPE_END_ELEMENT
61
+ end
62
+
63
+ def attribute(attribute)
64
+ @node.attribute(attribute)
65
+ end
66
+
67
+ def for_element(name, &block)
68
+ return unless self.name == name and is_start?
69
+ self.instance_eval(&block)
70
+ end
71
+
72
+ def inside_element(name=nil, &block)
73
+ return if @node.self_closing?
74
+ return unless name.nil? or (self.name == name and is_start?)
75
+
76
+ name = @node.name
77
+ depth = @node.depth
78
+
79
+ @node.each do
80
+ return if self.name == name and is_end? and @node.depth == depth
81
+ self.instance_eval(&block)
82
+ end
83
+ end
84
+ end
@@ -0,0 +1,11 @@
1
+ FactoryBot.define do
2
+ factory :admissions_admission, class: "Renalware::Admissions::Admission" do
3
+ accountable
4
+ patient { create(:patient, by: accountable_actor) }
5
+ admitted_on { Time.zone.today }
6
+ admission_type :unknown
7
+ reason_for_admission "Reason"
8
+ hospital_ward
9
+ modality_at_admission { patient&.current_modality }
10
+ end
11
+ end
@@ -5,8 +5,8 @@ FactoryBot.define do
5
5
  date { Time.zone.today }
6
6
  time { Time.zone.now }
7
7
  did_not_attend false
8
- height 1725
9
- weight 6985
8
+ height 1.5
9
+ weight 1.5
10
10
  pulse 100
11
11
  systolic_bp 112
12
12
  diastolic_bp 71
@@ -0,0 +1,14 @@
1
+ FactoryBot.define do
2
+ factory :feed_file, class: "Renalware::Feeds::File" do
3
+ association :file_type, factory: :feed_file_type
4
+ accountable
5
+
6
+ trait :practices do
7
+ association :file_type, factory: [:feed_file_type, :practices]
8
+ end
9
+
10
+ trait :primary_care_physicians do
11
+ association :file_type, factory: [:feed_file_type, :primary_care_physicians]
12
+ end
13
+ end
14
+ end
@@ -0,0 +1,17 @@
1
+ FactoryBot.define do
2
+ factory :feed_file_type, class: "Renalware::Feeds::FileType" do
3
+ name "Practices"
4
+ description "Import practices"
5
+ prompt "Where to get the file etc"
6
+
7
+ trait :practices do
8
+ name "Practices"
9
+ description "Import practices"
10
+ end
11
+
12
+ trait :primary_care_physicians do
13
+ name "GPs"
14
+ description "Import GPs"
15
+ end
16
+ end
17
+ end
@@ -0,0 +1,8 @@
1
+ FactoryBot.define do
2
+ factory :low_clearance_modality_description,
3
+ class: "Renalware::LowClearance::ModalityDescription" do
4
+ initialize_with do
5
+ Renalware::LowClearance::ModalityDescription.find_or_create_by(name: "Low Clearance")
6
+ end
7
+ end
8
+ end
@@ -0,0 +1,3 @@
1
+ FactoryBot.define do
2
+ factory :low_clearance_patient, class: "Renalware::LowClearance::Patient", parent: :patient
3
+ end
@@ -0,0 +1,3 @@
1
+ FactoryBot.define do
2
+ factory :low_clearance_profile, class: "Renalware::LowClearance::Profile"
3
+ end
@@ -21,7 +21,7 @@ FactoryBot.define do
21
21
 
22
22
  trait :low_clearance do
23
23
  name "Low Clearance"
24
- type "Renalware::Renal::LowClearance::ModalityDescription"
24
+ type "Renalware::LowClearance::ModalityDescription"
25
25
  end
26
26
 
27
27
  trait :death do
@@ -0,0 +1,7 @@
1
+ FactoryBot.define do
2
+ factory :practice_membership, class: "Renalware::Patients::PracticeMembership" do
3
+ practice
4
+ primary_care_physician
5
+ deleted_at nil
6
+ end
7
+ end
@@ -1,12 +1,10 @@
1
1
  FactoryBot.define do
2
2
  sequence :gp_code do |n|
3
- "GP123#{n}"
3
+ "GP1234#{n}"
4
4
  end
5
5
 
6
6
  factory :primary_care_physician, class: "Renalware::Patients::PrimaryCarePhysician" do
7
- given_name "Donald"
8
- family_name "Good"
9
- email "donald.good@nhs.net"
7
+ name "GOOD PJ"
10
8
  telephone "0203593082"
11
9
  code { generate(:gp_code) }
12
10
  practitioner_type "GP"
@@ -38,7 +38,7 @@ FactoryBot.define do
38
38
  end
39
39
 
40
40
  trait :expired do
41
- last_activity_at { 60.days.ago }
41
+ last_activity_at { 90.days.ago }
42
42
  expired_at { Time.zone.now }
43
43
  end
44
44
 
@@ -4,7 +4,7 @@ RSpec.configure do |config|
4
4
 
5
5
  config.before(:all) do
6
6
  if FactoryBot.factories.count == 0
7
- warn "Loading FactoryBot factories"
7
+ # warn "Loading FactoryBot factories"
8
8
  FactoryBot.find_definitions
9
9
  end
10
10
  end
@@ -0,0 +1,14 @@
1
+ # From https://github.com/rubysherpas/paranoia/wiki/Testing-with-rspec
2
+ shared_examples_for "a Paranoid model" do
3
+
4
+ it { is_expected.to have_db_column(:deleted_at) }
5
+ it { is_expected.to have_db_index(:deleted_at) }
6
+
7
+ it "adds a deleted_at where clause" do
8
+ expect(described_class.all.where_sql).to include(".\"deleted_at\" IS NULL")
9
+ end
10
+
11
+ it "skips adding the deleted_at where clause when unscoped" do
12
+ expect(described_class.unscoped.where_sql.to_s).not_to include("\"deleted_at\"")
13
+ end
14
+ end