renalware-core 2.0.0.pre.rc11 → 2.0.0.pre.rc13

data/spec/support/capybara.rb

@@ -1,3 +1,5 @@
+# frozen_string_literal: true
+
 if defined?(Capybara)
   # When this option is enabled, you can insert page.driver.debug into your tests
   # to pause the test and launch a browser which gives you the WebKit inspector

data/spec/support/capybara_helper.rb

@@ -1,3 +1,5 @@
+# frozen_string_literal: true
+
 module CapybaraHelper
   def select_nth_option_from(selector, number = 1)
     all("#{selector} option")[number - 1].select_option

data/spec/support/database_functions_spec_helper.rb

@@ -1,3 +1,5 @@
+# frozen_string_literal: true
+
 module DatabaseFunctionsSpecHelper
   def toggle_all_triggers(option)
     arg = (option == :off) ? "replica" : "DEFAULT"

data/spec/support/date_helpers.rb

@@ -1,3 +1,5 @@
+# frozen_string_literal: true
+
 module DateHelpers
   def todays_date
     I18n.l(Time.zone.today)

data/spec/support/devise_spec_helper.rb

@@ -1,3 +1,5 @@
+# frozen_string_literal: true
+
 require "devise"
 require_relative "./login_macros"
 

data/spec/support/drugs_spec_helper.rb

@@ -1,3 +1,5 @@
+# frozen_string_literal: true
+
 module DrugsSpecHelper
   def load_drugs(*names)
     names.each do |name|

data/spec/support/factory_bot.rb

@@ -1,3 +1,5 @@
+# frozen_string_literal: true
+
 RSpec.configure do |config|
   FactoryBot.definition_file_paths = Array(Renalware::Engine.root.join("spec", "factories"))
   config.include FactoryBot::Syntax::Methods

data/spec/support/json_helpers.rb

@@ -1,3 +1,5 @@
+# frozen_string_literal: true
+
 module JsonHelpers
   def json_response
     JSON.parse(response.body)

data/spec/support/letters_spec_helper.rb

@@ -1,3 +1,5 @@
+# frozen_string_literal: true
+
 module LettersSpecHelper
   def build_letter(state: :draft, to:, patient:, **args)
     trait = "#{state}_letter".to_sym
@@ -9,6 +11,11 @@ module LettersSpecHelper
     attributes = build_main_recipient_attributes(to)
     letter.main_recipient = build(:letter_recipient, :main, attributes)
 
+    # We shouldn't have to do this but for some reason in RSpec tests if the second test in a suite
+    # creates a letter it can end up with type of nil - something in Rails is not setting it.
+    # Hence this unpleasant hack:
+    letter.type ||= letter.class.sti_name
+
     letter
   end
 
@@ -18,6 +25,7 @@ module LettersSpecHelper
     letter
   end
 
+  # rubocop:disable Metrics/MethodLength
   def build_main_recipient_attributes(to)
     case to
     when :patient
@@ -33,4 +41,5 @@ module LettersSpecHelper
       }
     end
   end
+  # rubocop:enable Metrics/MethodLength
 end

data/spec/support/login_macros.rb

@@ -1,3 +1,5 @@
+# frozen_string_literal: true
+
 module LoginMacros
   def login_as_super_admin
     login_user(:super_admin)

data/spec/support/matchers/document.rb

@@ -1,3 +1,5 @@
+# frozen_string_literal: true
+
 RSpec::Matchers.define :match_document do |expected|
   match do |actual|
     actual.as_json == expected.as_json

data/spec/support/matchers/validate_timeliness_of.rb

@@ -1,3 +1,5 @@
+# frozen_string_literal: true
+
 RSpec::Matchers.define :validate_timeliness_of do |attribute|
   match do |model|
     model._validators[attribute.to_sym].detect do |validator|

data/spec/support/pathology_spec_helper.rb

@@ -1,3 +1,5 @@
+# frozen_string_literal: true
+
 module PathologySpecHelper
   def create_descriptions(names)
     names.map { |name| create_observation_description(name) }

data/spec/support/patients_spec_helper.rb

@@ -1,3 +1,5 @@
+# frozen_string_literal: true
+
 module PatientsSpecHelper
   def set_modality(patient:,
                    modality_description:,

data/spec/support/poltergeist.rb

@@ -1,2 +1,4 @@
+# frozen_string_literal: true
+
 require "capybara/poltergeist"
 Capybara.javascript_driver = :poltergeist

data/spec/support/pundit_matcher.rb

@@ -1,3 +1,5 @@
+# frozen_string_literal: true
+
 RSpec::Matchers.define :permit do |action|
   match do |policy|
     policy.public_send("#{action}?")

data/spec/support/roles_spec_helper.rb

@@ -1,3 +1,5 @@
+# frozen_string_literal: true
+
 module RolesSpecHelper
   def define_roles
     Renalware::Role::ROLES.each do |name|

data/spec/support/select2_spec_helper.rb

@@ -1,3 +1,5 @@
+# frozen_string_literal: true
+
 module Select2SpecHelper
   def select2(value, opts)
     scope = opts[:from]

data/spec/support/select_date_spec_helper.rb

@@ -1,3 +1,5 @@
+# frozen_string_literal: true
+
 module SelectDateSpecHelper
   def select_date(date, options = {})
     field = options[:from]

data/spec/support/shared_contexts/a_global_rule_set.rb

@@ -1,3 +1,5 @@
+# frozen_string_literal: true
+
 shared_context "a global_rule_set" do
   let!(:clinic) { create(:clinic) }
   let!(:required_observation_description) { create(:pathology_observation_description) }

data/spec/support/shared_examples/accountable_examples.rb

@@ -1,3 +1,5 @@
+# frozen_string_literal: true
+
 shared_examples_for "an Accountable model" do
   it { is_expected.to respond_to(:by=) }
   it { is_expected.to respond_to(:save_by!) }

data/spec/support/shared_examples/paranoia_examples.rb

@@ -1,6 +1,7 @@
+# frozen_string_literal: true
+
 # From https://github.com/rubysherpas/paranoia/wiki/Testing-with-rspec
 shared_examples_for "a Paranoid model" do
-
   it { is_expected.to have_db_column(:deleted_at) }
   it { is_expected.to have_db_index(:deleted_at) }
 

data/spec/support/shared_examples/supersedable_examples.rb

@@ -1,3 +1,5 @@
+# frozen_string_literal: true
+
 shared_examples_for "a Supersedable model" do
   it { is_expected.to have_db_column(:deactivated_at) }
   it { is_expected.to have_db_index(:deactivated_at) }

data/spec/support/translations.rb

@@ -1,3 +1,5 @@
+# frozen_string_literal: true
+
 module TranslationsHelper
   def with_translations(locale, translations)
     original_backend = I18n.backend

data/spec/support/travel.rb

@@ -1,3 +1,5 @@
+# frozen_string_literal: true
+
 RSpec.configure do |config|
   config.after(:each) do
     travel_back

data/spec/support/webmock.rb

@@ -1,3 +1,5 @@
+# frozen_string_literal: true
+
 require "webmock/rspec"
 
 WebMock.disable_net_connect!(allow_localhost: true)

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: renalware-core
 version: !ruby/object:Gem::Version
-  version: 2.0.0.pre.rc11
+  version: 2.0.0.pre.rc13
 platform: ruby
 authors:
 - Airslie
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2018-02-21 00:00:00.000000000 Z
+date: 2018-03-06 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: rails
@@ -318,6 +318,20 @@ dependencies:
     - - "~>"
       - !ruby/object:Gem::Version
         version: 5.2.3
+- !ruby/object:Gem::Dependency
+  name: gpgme
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: 2.0.16
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: 2.0.16
 - !ruby/object:Gem::Dependency
   name: hashdiff
   requirement: !ruby/object:Gem::Requirement
@@ -997,6 +1011,7 @@ files:
 - app/assets/stylesheets/renalware/partials/_tooltip.scss
 - app/assets/stylesheets/renalware/partials/_typography.scss
 - app/assets/stylesheets/renalware/partials/_utilities.scss
+- app/assets/stylesheets/renalware/patient_pages.scss
 - app/assets/stylesheets/renalware/pdf.scss
 - app/assets/stylesheets/renalware/print/pathology_request_forms.scss
 - app/assets/stylesheets/renalware/protocol_pdf.scss
@@ -1016,6 +1031,7 @@ files:
 - app/controllers/renalware/admissions/requests_controller.rb
 - app/controllers/renalware/api/token_authenticated_api_controller.rb
 - app/controllers/renalware/api/ukrdc/patients_controller.rb
+- app/controllers/renalware/api/v1/medications/prescriptions_controller.rb
 - app/controllers/renalware/api/v1/patients/patients_controller.rb
 - app/controllers/renalware/application_controller.rb
 - app/controllers/renalware/base_controller.rb
@@ -1688,6 +1704,11 @@ files:
 - app/models/renalware/transplants/registration_status_description.rb
 - app/models/renalware/transplants/registrations/wait_list_query.rb
 - app/models/renalware/transplants/version.rb
+- app/models/renalware/ukrdc.rb
+- app/models/renalware/ukrdc/patients_query.rb
+- app/models/renalware/ukrdc/send_patient.rb
+- app/models/renalware/ukrdc/send_patients.rb
+- app/models/renalware/ukrdc/transmission_log.rb
 - app/models/renalware/user.rb
 - app/models/renalware/version.rb
 - app/models/renalware/virology.rb
@@ -1821,15 +1842,11 @@ files:
 - app/presenters/renalware/medications/treatable_presenter.rb
 - app/presenters/renalware/messaging/internal/message_presenter.rb
 - app/presenters/renalware/messaging/internal/receipt_presenter.rb
-- app/presenters/renalware/pathology/historical_observation_results/html_table_view.rb
-- app/presenters/renalware/pathology/historical_observation_results/presenter.rb
 - app/presenters/renalware/pathology/observation_presenter.rb
 - app/presenters/renalware/pathology/observation_set_presenter.rb
 - app/presenters/renalware/pathology/observations_diff.rb
 - app/presenters/renalware/pathology/observations_for_codes_presenter.rb
 - app/presenters/renalware/pathology/patient_presenter.rb
-- app/presenters/renalware/pathology/recent_observation_results/html_table_view.rb
-- app/presenters/renalware/pathology/recent_observation_results/presenter.rb
 - app/presenters/renalware/pathology/requests/global_rule_presenter.rb
 - app/presenters/renalware/pathology/requests/global_rule_set_presenter.rb
 - app/presenters/renalware/pathology/requests/patient_rule_presenter.rb
@@ -1971,6 +1988,7 @@ files:
 - app/views/renalware/api/ukrdc/patients/observations/_standing_blood_pressure.xml.builder
 - app/views/renalware/api/ukrdc/patients/observations/_weight.xml.builder
 - app/views/renalware/api/ukrdc/patients/show.xml.builder
+- app/views/renalware/api/v1/medications/prescriptions/index.json.jbuilder
 - app/views/renalware/api/v1/patients/patients/show.json.jbuilder
 - app/views/renalware/base/_black_hole.html.slim
 - app/views/renalware/base/_modality_missing_warning.html.slim
@@ -2173,6 +2191,8 @@ files:
 - app/views/renalware/layouts/letter.pdf.slim
 - app/views/renalware/layouts/pdf.pdf.slim
 - app/views/renalware/letters/_summary_part.html.slim
+- app/views/renalware/letters/completed_letters/create.js.erb
+- app/views/renalware/letters/completed_letters/new.html.slim
 - app/views/renalware/letters/contacts/_contact.html.slim
 - app/views/renalware/letters/contacts/_edit.html.slim
 - app/views/renalware/letters/contacts/_form.html.slim
@@ -2217,7 +2237,9 @@ files:
 - app/views/renalware/letters/letters/new.html.slim
 - app/views/renalware/letters/letters/show.html.slim
 - app/views/renalware/letters/lists/_letter.html.slim
+- app/views/renalware/letters/lists/_table.html.slim
 - app/views/renalware/letters/lists/show.html.slim
+- app/views/renalware/letters/lists/show.js.erb
 - app/views/renalware/letters/parts/_allergies.html.slim
 - app/views/renalware/letters/parts/_clinical_observations.html.slim
 - app/views/renalware/letters/parts/_prescriptions.html.slim
@@ -2780,6 +2802,7 @@ files:
 - db/functions/generate_secure_id_v01.sql
 - db/functions/import_gps_csv_v01.sql
 - db/functions/import_practice_memberships_csv_v01.sql
+- db/functions/import_practice_memberships_csv_v02.sql
 - db/functions/import_practices_csv_v01.sql
 - db/functions/preprocess_hl7_message_v01.sql
 - db/functions/preprocess_hl7_message_v02.sql
@@ -3135,6 +3158,15 @@ files:
 - db/migrate/20180213171805_add_display_order_cols_to_observation_descriptions.rb
 - db/migrate/20180214124317_add_cols_to_aki_alerts.rb
 - db/migrate/20180216132741_disable_some_audits.rb
+- db/migrate/20180221210458_add_state_index_on_modalities.rb
+- db/migrate/20180222090501_add_partial_index_to_bookmarks.rb
+- db/migrate/20180223100420_add_sent_to_ukrdc_at_to_patients.rb
+- db/migrate/20180226124724_add_patient_id_to_virology_profile.rb
+- db/migrate/20180226132410_create_ukrdc_transmission_logs.rb
+- db/migrate/20180301095040_update_fn_to_upsert_gp_practive_memberships.rb
+- db/migrate/20180305134959_add_display_group_to_observation_desriptions.rb
+- db/migrate/20180306071308_remove_rogue_aki_alerts_column.rb
+- db/migrate/20180306080518_add_state_tracking_cols_to_letters.rb
 - db/seeds.rb
 - db/seeds/default/accesses/access_pd_catheter_insertion_techniques.csv
 - db/seeds/default/accesses/access_pd_catheter_insertion_techniques.rb
@@ -3285,6 +3317,7 @@ files:
 - lib/tasks/cucumber.rake
 - lib/tasks/cucumber_web.rake
 - lib/tasks/feeds/files.rake
+- lib/tasks/ukrdc.rake
 - lib/templates/slim/scaffold/_form.html.slim
 - lib/test_support/ajax_helpers.rb
 - lib/test_support/autocomplete_helpers.rb

data/app/presenters/renalware/pathology/historical_observation_results/html_table_view.rb

@@ -1,64 +0,0 @@
-require_dependency "renalware/pathology"
-
-module Renalware
-  module Pathology
-    # Responsible for rendering a HTML table to format historical observation results.
-    #
-    class HistoricalObservationResults::HTMLTableView < SimpleDelegator
-      def render(view_model)
-        header, *body = view_model
-
-        content_tag(:table, id: "observations") do
-          concat(format_header(header))
-          concat(format_body(body))
-        end
-      end
-
-      private
-
-      def format_header(cells)
-        content_tag(:thead) do
-          content_tag(:tr) do
-            cells.each do |cell|
-              concat(format_header_cell(cell))
-            end
-          end
-        end
-      end
-
-      def format_body(rows)
-        content_tag(:tbody) do
-          rows.each do |row|
-            concat(content_tag(:tr) do
-              row.each do |cell|
-                concat(format_body_cell(cell))
-              end
-            end)
-          end
-        end
-      end
-
-      def format_header_cell(cell)
-        content_tag(:th, cell, class: cell.html_class, title: cell.title)
-      end
-
-      def format_body_cell(cell)
-        if cell.respond_to?(:cancelled?)
-          if cell.cancelled?
-            # content = cell.cancelled ? "CANCL" : cell.to_s
-            content_tag(:td, class: cell.html_class, style: "text-align: center") do
-              tooltip_with_block(label: cell.comment) do
-                content_tag(:i, "", class: "fa fa-warning centre")
-              end
-            end
-          else
-            content_tag(:td, cell, class: cell.html_class)
-          end
-        else
-          # A date?
-          content_tag(:td, cell, class: cell.html_class)
-        end
-      end
-    end
-  end
-end

data/app/presenters/renalware/pathology/historical_observation_results/presenter.rb

@@ -1,86 +0,0 @@
-require_dependency "renalware/pathology"
-
-module Renalware
-  module Pathology
-    # Reponsible for building the view model for historical observation results.
-    #
-    class HistoricalObservationResults::Presenter < ResultsPresenter
-      # @return [Array] see example below for composition of array
-      #
-      # Example:
-      #
-      #   [
-      #     ["observed_on", "HGB", "MCV", "WBC"]
-      #     [Date.parse("2011-10-10")], Observation.new(result: "2"), Observation.new(result: "3")],
-      #     [Date.parse("2011-10-09")], Observation.new(result: "5"), nil],
-      #     [Date.parse("2011-10-10")], nil, Observation.new(result: "4")],
-      #   ]
-      #
-      def present(*args)
-        super
-      end
-
-      private
-
-      # @section header
-
-      def build_header
-        presentation = []
-        presentation << [build_date_cell, *build_descriptions]
-      end
-
-      def build_date_cell
-        HeaderPresenter.new("date")
-      end
-
-      def build_descriptions
-        @results.observation_descriptions.map { |description| HeaderPresenter.new(description) }
-      end
-
-      # @section body
-
-      def build_body
-        @results.map { |observations_by_date| build_row(observations_by_date) }
-      end
-
-      def build_row(observations_by_date)
-        observed_on = build_date(observations_by_date)
-        observations = build_observations(observations_by_date)
-
-        [observed_on, *observations]
-      end
-
-      def build_date(observations_by_date)
-        observed_on = observations_by_date.keys.first
-        DatePresenter.new(observed_on)
-      end
-
-      def build_observations(observations_by_date)
-        observations = observations_by_date.values.first
-        observations.map { |observation| ObservationPresenter.new(observation) }
-      end
-
-      # @section presenters
-
-      class HeaderPresenter < SimpleDelegator
-        def title
-          to_s
-        end
-
-        def html_class
-          to_s.downcase
-        end
-      end
-
-      class DatePresenter < HeaderPresenter
-        def to_s
-          I18n.l(self)
-        end
-
-        def html_class
-          "date"
-        end
-      end
-    end
-  end
-end