renalware-core 2.0.0.pre.beta8 → 2.0.0.pre.beta9

data/db/migrate/20170925161033_add_code_to_patient_langauges.rb

@@ -0,0 +1,6 @@
+class AddCodeToPatientLangauges < ActiveRecord::Migration[5.1]
+  def change
+    add_column :patient_languages, :code, :string
+    add_index :patient_languages, :code, unique: true
+  end
+end

data/db/migrate/20170925182738_add_rr_code_to_medication_routes.rb

@@ -0,0 +1,5 @@
+class AddRrCodeToMedicationRoutes < ActiveRecord::Migration[5.1]
+  def change
+    add_column :medication_routes, :rr_code, :string
+  end
+end

data/db/migrate/20170926081426_create_countries.rb

@@ -0,0 +1,14 @@
+class CreateCountries < ActiveRecord::Migration[5.1]
+  def change
+    create_table :system_countries do |t|
+      t.string :name, null: false, index: :unique
+      t.string :alpha2, null: false, index: :unique
+      t.string :alpha3, null: false, index: :unique
+      t.integer :position, index: :true
+    end
+
+    remove_column :addresses, :country, :string
+    add_column :addresses, :country_id, :integer, index: true
+    add_foreign_key :addresses, :system_countries, column: :country_id
+  end
+end

data/db/migrate/20170926132845_add_country_of_birth_to_patients.rb

@@ -0,0 +1,6 @@
+class AddCountryOfBirthToPatients < ActiveRecord::Migration[5.1]
+  def change
+    add_column :patients, :country_of_birth_id, :integer, index: true
+    add_foreign_key :patients, :system_countries, column: :country_of_birth_id
+  end
+end

data/db/migrate/20171002175804_add_rr_columns_to_transplant_registration_status_descriptions.rb

@@ -0,0 +1,12 @@
+class AddRrColumnsToTransplantRegistrationStatusDescriptions < ActiveRecord::Migration[5.1]
+  def change
+    add_column :transplant_registration_status_descriptions,
+               :rr_code,
+               :integer,
+               index: true
+
+    add_column :transplant_registration_status_descriptions,
+               :rr_comment,
+               :text
+  end
+end

data/db/migrate/20171003093347_create_hospital_wards.rb

@@ -0,0 +1,17 @@
+class CreateHospitalWards < ActiveRecord::Migration[5.1]
+  def change
+    create_table :hospital_wards do |t|
+      t.string :name, null: false
+      t.references :hospital_unit, index: true, foreign_key: true, null: false
+      t.datetime :deleted_at
+      t.timestamps null: false
+    end
+
+    # This create a postgres partial index
+    # Name must be unique in for any unit, but only amongst un-deleted wards.
+    add_index :hospital_wards,
+              [:name, :hospital_unit_id],
+              unique: true,
+              where: "deleted_at IS NOT NULL"
+  end
+end

data/db/migrate/20171003111228_create_aki_alert_actions.rb

@@ -0,0 +1,10 @@
+class CreateAKIAlertActions < ActiveRecord::Migration[5.1]
+  def change
+    create_table :renal_aki_alert_actions do |t|
+      t.string :name, null: false, index: :unique
+      t.integer :position, null: false, default: 0
+
+      t.timestamps null: false
+    end
+  end
+end

data/db/migrate/20171003122425_create_renal_aki_alerts.rb

@@ -0,0 +1,22 @@
+class CreateRenalAKIAlerts < ActiveRecord::Migration[5.1]
+  def change
+    create_table :renal_aki_alerts do |t|
+      t.references :patient, null: false, foreign_key: true, index: true
+      t.references :action,
+                   foreign_key: { to_table: :renal_aki_alert_actions },
+                   index: true,
+                   null: true
+      t.references :hospital_ward,
+                   foreign_key: { to_table: :hospital_wards },
+                   index: true,
+                   null: true
+      t.boolean :hotlist, null: false, default: false, index: true
+      t.string :renal_aki_alerts, :action, :string, index: true
+      t.text :notes
+      t.references :updated_by, foreign_key: { to_table: :users }, index: true
+      t.references :created_by, foreign_key: { to_table: :users }, index: true
+
+      t.timestamps null: false
+    end
+  end
+end

data/db/migrate/20171005081224_create_reporting_bone_audit.rb

@@ -0,0 +1,5 @@
+class CreateReportingBoneAudit < ActiveRecord::Migration[5.0]
+  def change
+    create_view :reporting_bone_audit
+  end
+end

data/db/migrate/20171005091202_reporting_audit_changes.rb

@@ -0,0 +1,7 @@
+class ReportingAuditChanges < ActiveRecord::Migration[5.1]
+  def change
+    rename_column :reporting_audits, :materialized_view_name, :view_name
+    add_column :reporting_audits, :materialized, :boolean, null: false, default: true
+    change_column_null :reporting_audits, :refresh_schedule, true
+  end
+end

data/db/migrate/20171005130109_create_medication_current_prescriptions.rb

@@ -0,0 +1,5 @@
+class CreateMedicationCurrentPrescriptions < ActiveRecord::Migration[5.0]
+  def change
+    create_view :medication_current_prescriptions
+  end
+end

data/db/migrate/20171005144505_create_reporting_anaemia_audit.rb

@@ -0,0 +1,5 @@
+class CreateReportingAnaemiaAudit < ActiveRecord::Migration[5.0]
+  def change
+    create_view :reporting_anaemia_audit
+  end
+end

data/db/migrate/20171009104106_add_legacy_patient_id_to_patients.rb

@@ -0,0 +1,6 @@
+class AddLegacyPatientIdToPatients < ActiveRecord::Migration[5.1]
+  def change
+    add_column :patients, :legacy_patient_id, :integer, null: true
+    add_index :patients, :legacy_patient_id, unique: true
+  end
+end

data/db/seeds/default/events/{event_types_required.rb → event_types.rb}

@@ -1,7 +1,7 @@
 module Renalware
-  log "Adding Biopsy and Swab Event Types" do
+  log "Adding Default Event Types e.g. Biopsy, Swabs" do
 
-    file_path = File.join(File.dirname(__FILE__), "event_types_required.csv")
+    file_path = File.join(File.dirname(__FILE__), "event_types.csv")
 
     CSV.foreach(file_path, headers: true) do |row|
       Events::Type.find_or_create_by!(name: row["name"],

data/db/seeds/default/events/seeds.rb

@@ -1,2 +1 @@
-require_relative "./event_types_required"
-require_relative "./event_types_local"
+require_relative "./event_types"

data/db/seeds/default/medications/medication_routes.rb

@@ -1,19 +1,29 @@
 module Renalware
   log "Adding Medication Routes" do
 
-    Medications::MedicationRoute.transaction do
-      Medications::MedicationRoute.find_or_create_by!(code: "PO", name: "Per Oral")
-      Medications::MedicationRoute.find_or_create_by!(code: "IV", name: "Intravenous")
-      Medications::MedicationRoute.find_or_create_by!(code: "SC", name: "Subcutaneous")
-      Medications::MedicationRoute.find_or_create_by!(code: "IM", name: "Intramuscular")
-      Medications::MedicationRoute.find_or_create_by!(code: "IP", name: "Intraperitoneal")
-      Medications::MedicationRoute.find_or_create_by!(code: "INH", name: "Inhaler")
-      Medications::MedicationRoute.find_or_create_by!(code: "SL", name: "Sublingual")
-      Medications::MedicationRoute.find_or_create_by!(code: "NG", name: "Nasogastric")
-      Medications::MedicationRoute.find_or_create_by!(code: "PARENT", name: "Parenteral")
-      Medications::MedicationRoute.find_or_create_by!(code: "PERCUT", name: "Percutaneous")
-      Medications::MedicationRoute.find_or_create_by!(code: "TOP", name: "Topical")
-      Medications::MedicationRoute.find_or_create_by!(code: "OTHER", name: "Other")
+    module RR
+      ORAL = 1
+      TOPICAL = 2
+      INHALATION = 3
+      INJECTION = 4
+      INTRAPERITONEAL = 5
+      OTHER = 9
+    end
+
+    MRoute = Medications::MedicationRoute
+    MRoute.transaction do
+      MRoute.find_or_create_by!(code: "PO", name: "Per Oral", rr_code: RR::ORAL)
+      MRoute.find_or_create_by!(code: "IV", name: "Intravenous", rr_code: RR::INJECTION)
+      MRoute.find_or_create_by!(code: "SC", name: "Subcutaneous", rr_code: RR::INJECTION)
+      MRoute.find_or_create_by!(code: "IM", name: "Intramuscular", rr_code: RR::INJECTION)
+      MRoute.find_or_create_by!(code: "IP", name: "Intraperitoneal", rr_code: RR::INTRAPERITONEAL)
+      MRoute.find_or_create_by!(code: "INH", name: "Inhaler", rr_code: RR::INHALATION)
+      MRoute.find_or_create_by!(code: "SL", name: "Sublingual", rr_code: RR::OTHER)
+      MRoute.find_or_create_by!(code: "NG", name: "Nasogastric", rr_code: RR::OTHER)
+      MRoute.find_or_create_by!(code: "PARENT", name: "Parenteral", rr_code: RR::INJECTION)
+      MRoute.find_or_create_by!(code: "PERCUT", name: "Percutaneous", rr_code: RR::OTHER)
+      MRoute.find_or_create_by!(code: "TOP", name: "Topical", rr_code: RR::TOPICAL)
+      MRoute.find_or_create_by!(code: "OTHER", name: "Other", rr_code: RR::OTHER)
     end
   end
 end

data/db/seeds/default/patients/patients_languages.csv

@@ -1,102 +1,192 @@
-"name"
-"English"
-"Other"
-"Akan"
-"Amharic"
-"Arabic"
-"Assamese"
-"Awadhi"
-"Azerbaijani"
-"Balochi"
-"Belarusian"
-"Bengali"
-"Bhojpuri"
-"Burmese"
-"Cebuano (Visayan)"
-"Chewa"
-"Chhattisgarhi"
-"Chittagonian"
-"Czech"
-"Deccan"
-"Dhundhari"
-"Dutch"
-"Eastern Min"
-"French"
-"Fula"
-"Gan Chinese"
-"German"
-"Greek"
-"Gujarati"
-"Haitian Creole"
-"Hakka"
-"Haryanvi"
-"Hausa"
-"Hiligaynon"
-"Hindi"
-"Hmong"
-"Hungarian"
-"Igbo"
-"Ilocano"
-"Italian"
-"Japanese"
-"Javanese"
-"Jin"
-"Kannada"
-"Kazakh"
-"Khmer"
-"Kinyarwanda"
-"Kirundi"
-"Konkani"
-"Korean"
-"Kurdish"
-"Madurese"
-"Magahi"
-"Maithili"
-"Malagasy"
-"Malay/Indonesian"
-"Malayalam"
-"Mandarin"
-"Marathi"
-"Marwari"
-"Mossi"
-"Nepali"
-"Northern Min"
-"Odia (Oriya)"
-"Oromo"
-"Pashto"
-"Persian"
-"Polish"
-"Portuguese"
-"Punjabi"
-"Quechua"
-"Romanian"
-"Russian"
-"Saraiki"
-"Serbo-Croatian"
-"Shona"
-"Sindhi"
-"Sinhalese"
-"Somali"
-"Southern Min"
-"Spanish"
-"Sundanese"
-"Swedish"
-"Sylheti"
-"Tagalog"
-"Tamil"
-"Telugu"
-"Thai"
-"Turkish"
-"Turkmen"
-"Ukrainian"
-"Urdu"
-"Uyghur"
-"Uzbek"
-"Vietnamese"
-"Wu (inc. Shanghainese)"
-"Xhosa"
-"Xiang (Hunnanese)"
-"Yoruba"
-"Yue (Cantonese)"
-"Zhuang"
-"Zulu"
+code,name
+en,English
+ot,Other
+aa,Afar
+ab,Abkhazian
+ae,Avestan
+af,Afrikaans
+ak,Akan
+am,Amharic
+an,Aragonese
+ar,Arabic
+as,Assamese
+av,Avaric
+ay,Aymara
+az,Azerbaijani
+ba,Bashkir
+be,Belarusian
+bg,Bulgarian
+bh,Bihari languages
+bi,Bislama
+bm,Bambara
+bn,Bengali
+bo,Tibetan
+br,Breton
+bs,Bosnian
+ca,Catalan; Valencian
+ce,Chechen
+ch,Chamorro
+co,Corsican
+cr,Cree
+cs,Czech
+cu,Church Slavic; Old Slavonic; Church Slavonic; Old Bulgarian; Old Church Slavonic
+cv,Chuvash
+cy,Welsh
+da,Danish
+de,German
+dv,Divehi; Dhivehi; Maldivian
+dz,Dzongkha
+ee,Ewe
+el,"Greek, Modern (1453-)"
+eo,Esperanto
+es,Spanish; Castilian
+et,Estonian
+eu,Basque
+fa,Persian
+ff,Fulah
+fi,Finnish
+fj,Fijian
+fo,Faroese
+fr,French
+fy,Western Frisian
+ga,Irish
+gd,Gaelic; Scottish Gaelic
+gl,Galician
+gn,Guarani
+gu,Gujarati
+gv,Manx
+ha,Hausa
+he,Hebrew
+hi,Hindi
+ho,Hiri Motu
+hr,Croatian
+ht,Haitian; Haitian Creole
+hu,Hungarian
+hy,Armenian
+hz,Herero
+ia,Interlingua (International Auxiliary Language Association)
+id,Indonesian
+ie,Interlingue; Occidental
+ig,Igbo
+ii,Sichuan Yi; Nuosu
+ik,Inupiaq
+io,Ido
+is,Icelandic
+it,Italian
+iu,Inuktitut
+ja,Japanese
+jv,Javanese
+ka,Georgian
+kg,Kongo
+ki,Kikuyu; Gikuyu
+kj,Kuanyama; Kwanyama
+kk,Kazakh
+kl,Kalaallisut; Greenlandic
+km,Central Khmer
+kn,Kannada
+ko,Korean
+kr,Kanuri
+ks,Kashmiri
+ku,Kurdish
+kv,Komi
+kw,Cornish
+ky,Kirghiz; Kyrgyz
+la,Latin
+lb,Luxembourgish; Letzeburgesch
+lg,Ganda
+li,Limburgan; Limburger; Limburgish
+ln,Lingala
+lo,Lao
+lt,Lithuanian
+lu,Luba-Katanga
+lv,Latvian
+mg,Malagasy
+mh,Marshallese
+mi,Maori
+mk,Macedonian
+ml,Malayalam
+mn,Mongolian
+mr,Marathi
+ms,Malay
+mt,Maltese
+my,Burmese
+na,Nauru
+nb,"Bokmål, Norwegian; Norwegian Bokmål"
+nd,"Ndebele, North; North Ndebele"
+ne,Nepali
+ng,Ndonga
+nl,Dutch; Flemish
+nn,"Norwegian Nynorsk; Nynorsk, Norwegian"
+no,Norwegian
+nr,"Ndebele, South; South Ndebele"
+nv,Navajo; Navaho
+ny,Chichewa; Chewa; Nyanja
+oc,Occitan (post 1500); Provençal
+oj,Ojibwa
+om,Oromo
+or,Oriya
+os,Ossetian; Ossetic
+pa,Panjabi; Punjabi
+pi,Pali
+pl,Polish
+ps,Pushto; Pashto
+pt,Portuguese
+qu,Quechua
+rm,Romansh
+rn,Rundi
+ro,Romanian; Moldavian; Moldovan
+ru,Russian
+rw,Kinyarwanda
+sa,Sanskrit
+sc,Sardinian
+sd,Sindhi
+se,Northern Sami
+sg,Sango
+si,Sinhala; Sinhalese
+sk,Slovak
+sl,Slovenian
+sm,Samoan
+sn,Shona
+so,Somali
+sq,Albanian
+sr,Serbian
+ss,Swati
+st,"Sotho, Southern"
+su,Sundanese
+sv,Swedish
+sw,Swahili
+ta,Tamil
+te,Telugu
+tg,Tajik
+th,Thai
+ti,Tigrinya
+tk,Turkmen
+tl,Tagalog
+tn,Tswana
+to,Tonga (Tonga Islands)
+tr,Turkish
+ts,Tsonga
+tt,Tatar
+tw,Twi
+ty,Tahitian
+ug,Uighur; Uyghur
+uk,Ukrainian
+ur,Urdu
+uz,Uzbek
+ve,Venda
+vi,Vietnamese
+vo,Volapük
+wa,Walloon
+wo,Wolof
+xh,Xhosa
+yi,Yiddish
+yo,Yoruba
+za,Zhuang; Chuang
+zh,Chinese
+zu,Zulu
+q1,Braille - for people who are unable to see
+q2,American Sign Language
+q3,Australian Sign Language
+q4,British Sign Language
+q5,Makaton - devised for children and adults with a variety of communication and Learning Disabilities
+un,Unknown