renalware-core 2.0.0.pre.beta4 → 2.0.0.pre.beta5

data/app/controllers/renalware/clinical_summaries_controller.rb

@@ -1,13 +0,0 @@
-require_dependency "renalware"
-
-module Renalware
-  class ClinicalSummariesController < BaseController
-    skip_after_action :verify_authorized
-    before_action :load_patient
-
-    def show
-      clinical_summary = Renal::ClinicalSummaryPresenter.new(patient)
-      render :show, locals: { clinical_summary: clinical_summary }
-    end
-  end
-end

data/app/controllers/renalware/errors_controller.rb

@@ -1,18 +0,0 @@
-module Renalware
-  class ErrorsController < ApplicationController
-    layout "renalware/layouts/error"
-
-    def not_found
-      render status: 404, formats: [:html]
-    end
-
-    def internal_server_error
-      render status: 500, formats: [:html]
-    end
-
-    def generate_test_internal_server_error
-      raise "This is an intentionally raised error - please ignore it. " \
-            "It is used only to test system integration"
-    end
-  end
-end

data/app/controllers/renalware/mock_errors_controller.rb

@@ -1,10 +0,0 @@
-require_dependency "renalware"
-
-module Renalware
-  class MockErrorsController < BaseController
-
-    def index
-      0 / 0 # ZeroDivisionError
-    end
-  end
-end

data/app/controllers/renalware/patients_controller.rb

@@ -1,107 +0,0 @@
-require_dependency "renalware/patients"
-
-module Renalware
-  class PatientsController < BaseController
-    include PresenterHelper
-    include Renalware::Concerns::Pageable
-
-    def index
-      patients = patient_search.result.page(page).per(per_page)
-      authorize patients
-      render locals: {
-        patients: present(patients, PatientPresenter)
-      }
-    end
-
-    def search
-      skip_authorization
-      query = Patients::SearchQuery.new(term: params[:term])
-      render json: query.call.to_json
-    end
-
-    def new
-      patient = Patient.new
-      authorize patient
-      render locals: { patient: patient }
-    end
-
-    def create
-      patient = Patient.new(patient_params)
-      authorize patient
-
-      if patient.save
-        # Reload in order to let pg generate the secure id
-        redirect_to_patient_demographics(patient.reload)
-      else
-        flash[:error] = failed_msg_for("patient")
-        render :new, locals: { patient: patient }
-      end
-    end
-
-    def edit
-      authorize patient
-      render locals: { patient: patient }
-    end
-
-    def update
-      authorize patient
-      if patient.update(patient_params)
-        redirect_to_patient_demographics(patient)
-      else
-        flash[:error] = t(".failed", model_name: "patient")
-        render :edit, locals: { patient: patient }
-      end
-    end
-
-    def show
-      authorize patient
-      render locals: { patient: patient }
-    end
-
-    def patient
-      @patient ||= Renalware::Patient.find_by!(secure_id: params[:id])
-    end
-
-    private
-
-    def patient_params
-      params
-        .require(:patient)
-        .permit(patient_attributes)
-        .merge(document: document_attributes)
-        .merge(by: current_user)
-    end
-
-    # rubocop:disable Metrics/MethodLength
-    def patient_attributes
-      [
-        :nhs_number, :family_name, :given_name, :sex,
-        :ethnicity_id, :born_on, :paediatric_patient_indicator, :cc_on_all_letters,
-        :title, :suffix, :marital_status, :telephone1, :telephone2, :email, :religion_id,
-        :language_id, :cc_decision_on,
-        :local_patient_id, :local_patient_id_2, :local_patient_id_3,
-        :local_patient_id_4, :local_patient_id_5, :external_patient_id,
-        :send_to_renalreg, :send_to_rpv, :renalreg_decision_on, :rpv_decision_on,
-        :renalreg_recorded_by, :rpv_recorded_by,
-        current_address_attributes: address_params
-      ]
-    end
-    # rubocop:enable Metrics/MethodLength
-
-    def address_params
-      [:id, :name, :organisation_name, :street_1, :street_2, :street_3, :county, :country,
-        :town, :postcode, :telephone, :email]
-    end
-
-    def document_attributes
-      params
-        .require(:patient)
-        .fetch(:document, nil)
-        .try(:permit!)
-    end
-
-    def redirect_to_patient_demographics(patient)
-      redirect_to patient, notice: success_msg_for("patient")
-    end
-  end
-end

data/app/models/renalware/patient_search.rb

@@ -1,11 +0,0 @@
-module Renalware
-  class PatientSearch
-    def self.call(params)
-      Renalware::Patient
-        .includes(current_modality: [:description])
-        .search(params[:q]).tap do |search|
-          search.sorts = %w(family_name given_name)
-      end
-    end
-  end
-end

data/app/models/renalware/patient_summary.rb

@@ -1,6 +0,0 @@
-require_dependency "renalware"
-
-module Renalware
-  class PatientSummary < ApplicationRecord
-  end
-end

data/app/views/renalware/admin/users/_header.html.slim

@@ -1,6 +0,0 @@
-h1 Users
-
-dl.sub-nav
-  dd= link_to "All", admin_users_path
-  dd= link_to "Unapproved", admin_unapproved_users_path
-  dd= link_to "Inactive", admin_inactive_users_path

data/app/views/renalware/clinical/body_compositions/_row.html.slim

@@ -1,15 +0,0 @@
-tr
-  td= body_composition.assessed_on
-  td= body_composition.assessor
-  td= body_composition.overhydration
-  td= body_composition.volume_of_distribution
-  td= body_composition.total_body_water
-  td= body_composition.extracellular_water
-  td= body_composition.intracellular_water
-  td= body_composition.lean_tissue_index
-  td= body_composition.fat_tissue_index
-  td= body_composition.lean_tissue_mass
-  td= body_composition.fat_tissue_mass
-  td= body_composition.adipose_tissue_mass
-  td= body_composition.body_cell_mass
-  td= body_composition.quality_of_reading

data/app/views/renalware/clinical/body_compositions/index.html.slim

@@ -1,12 +0,0 @@
-= within_patient_layout(title: "Body Composition Measurements", breadcrumbs: clinical_profile_breadcrumb(@patient)) do
-  .document.hd-sessions
-    table.auto-layout
-      thead
-        th.col-width-date= sort_link(search, :assessed_on, "Date")
-        th Assessor
-
-      tbody
-        - body_compositions.each do |body_composition|
-          = render "row", body_composition: body_composition
-
-    = paginate body_compositions

data/app/views/renalware/deaths/_navigation.html.slim

@@ -1,3 +0,0 @@
-dl.sub-nav
-  dd= link_to "View", patient_path(@patient)
-  dd= link_to "Edit", edit_patient_path(@patient)

data/app/views/renalware/directory/people/_header.html.slim

@@ -1,5 +0,0 @@
-h1 Directory
-
-dl.sub-nav
-  dd= link_to "List", directory_people_path
-  dd= link_to "Add person", new_directory_person_path

data/app/views/renalware/drugs/drugs/_header.html.slim

@@ -1,5 +0,0 @@
-h1 Drugs
-
-dl.sub-nav
-  dd= link_to "List", drugs_drugs_path
-  dd= link_to "Add drug", new_drugs_drug_path

data/app/views/renalware/hospitals/units/_header.html.slim

@@ -1,5 +0,0 @@
-h1 Hospital Units
-
-dl.sub-nav
-  dd= link_to "List", hospitals_units_path
-  dd= link_to "Add unit", new_hospitals_unit_path

data/db/seeds/default/hospitals/dialysis_units.csv

@@ -1,7 +0,0 @@
-"hospital_centre_code","unit_code","unit_name","renal_registry_code","unit_type"
-"QC001","MOUNT","Mount Royal HD Unit","QC001","hospital"
-"QC001","PEEL","Peel HD Unit","QCAB2","satellite"
-"QC001","DRUM","Drummond HD Unit","QCXY3","satellite"
-"QC001","FAIR","Fairmount Hosp HD Unit","QC002","hospital"
-"QC001","MCGILL","McGill Hosp HD Unit","QC003","hospital"
-"QC001","HOME","Home HD","QC001","home"

data/db/seeds/default/hospitals/dialysis_units.rb

@@ -1,17 +0,0 @@
-module Renalware
-  log "Adding Dialysis Units" do
-
-    file_path = File.join(File.dirname(__FILE__), "dialysis_units.csv")
-
-    CSV.foreach(file_path, headers: true) do |row|
-      hospital = Hospitals::Centre.find_by code: row["hospital_centre_code"]
-
-      hospital.units.find_or_create_by!(unit_code: row["unit_code"]) do |unit|
-        unit.name = row["unit_name"]
-        unit.renal_registry_code = row["renal_registry_code"]
-        unit.unit_type = row["unit_type"]
-        unit.is_hd_site = true
-      end
-    end
-  end
-end

data/db/seeds/default/hospitals/hospital_centres.csv

@@ -1,86 +0,0 @@
-code,name,location,is_transplant_site
-QC001,Mount Royal Hospital,Montreal,1
-SNC01,Aberdeen Royal Infirmary,Aberdeen,0
-SLC01,Monklands Hospital,Airdrie,0
-24027,Antrim Hospital,Antrim,0
-RQBAU,Ysbyty Gwynedd,Bangor,0
-RDDH0,Basildon Hospital,Basildon,0
-2020,Belfast City Hospital,Belfast,1
-11023,Royal Belfast Hospital for Sick Children,Belfast,0
-7021,Ulster Hospital,Belfast,0
-RQ3,Birmingham Childrens Hospital,Birmingham,0
-RL7,Heartlands Hospital,Birmingham,0
-RRK02,Queen Elizabeth Hospital,Birmingham,1
-RAE05,St Lukes Hospital,Bradford,0
-RGU01,Royal Sussex County Hospital,Brighton,0
-RA723,Bristol Royal Hospital for Children,Bristol,0
-REE01,Southmead Hospital,Bristol,1
-RGT01,Addenbrookes Hospital,Cambridge,1
-RVVKC,Kent & Canterbury Hospital,Canterbury,0
-RWM51,Children's Kidney Centre - UHW,Cardiff,0
-RRBBV,University Hospital of Wales,Cardiff,1
-RLGAY,Cumberland Infirmary,Carlisle,0
-RAZ,St Helier Hospital,Carshalton,0
-RQ8L0,Broomfield Hospital,Chelmsford,0
-RDEE4,Colchester General Hospital,Colchester,0
-RKB01,University Hospital Coventry & Warwick,Coventry,0
-RFPFG,Royal Derby Hospital,Derby,0
-RP5,Doncaster Royal Infirmary,Doncaster,0
-RBD01,Dorset County Hospital,Dorchester,0
-RNA03,Russells Hall Hospital,Dudley,0
-SYC02,Dumfries & Galloway Royal Infirmary,Dumfries,0
-STC01,Ninewells Hospital,Dundee,0
-SSC02,Royal Infirmary of Edinburgh,Edinburgh,1
-RH8,Royal Devon and Exeter Hospital,Exeter,0
-SGC04,Western Infirmary,Glasgow,1
-SGC02,Royal Hospital for Sick Children,Glasgow,0
-RH641,Gloucestershire Royal Hospital,Gloucester,0
-RF201,Hull Royal Infirmary,Hull,0
-SHC01,Raigmore Hospital,Inverness,0
-RGQ02,Ipswich Hospital,Ipswich,0
-SAC02,University Hospital Crosshouse,Kilmarnock,0
-SFC01,Victoria Hospital,Kirkcaldy,0
-99RQR13,Leeds Children's Hospital,Leeds,0
-RQR13,St James's University Hospital,Leeds,1
-RFBAK,Leicester General Hospital,Leicester,1
-RW402,Aintree University Hospital,Liverpool,0
-RBS25,Alder Hey Childrens Hospital,Liverpool,0
-RQ617,Royal Liverpool University Hospital,Liverpool,1
-RNJ00,Barts and The London Hospital,London,1
-RJ122,Evelina Children's Hospital (Guys & St Thomas'),London,0
-RP4,Great Ormond Street Hospital for Children,London,0
-RJ121,Guy's and St Thomas's Hospital,London,1
-RJZ,King's College Hospital,London,0
-RAL01,Royal Free Hospital,London,1
-RJ701,St George's Hospital,London,1
-RQN02,West London - Hammersmith Hospital,London,1
-RM574,Manchester Royal Infirmary,Manchester,1
-RW3RM,Royal Manchester Children's Hospital,Manchester,0
-RCJAT,James Cook University Hospital,Middlesbrough,0
-RTD01,Freeman Hospital & Royal Victoria Infirmary,Newcastle,1
-RTD02,The Great North Childrens Hospital,Newcastle,0
-33020,Daisy Hill Hospital  (Southern Trust),Newry,0
-RM102,Norfolk & Norwich University Hospital,Norwich,0
-99RCSLB,Nottingham Childrens Hospital  (Queens Medical Centre),Nottingham,0
-RCSLB,Nottingham City Hospital,Nottingham,1
-45021,Tyrone County Hospital  (Western Trust),Omagh,0
-RNX02,John Radcliffe Hospital,Oxford,1
-RK950,Derriford Hospital,Plymouth,1
-RHU02,Queen Alexandra Hospital,Portsmouth,1
-RMF01,Royal Preston Hospital,Preston,0
-RHW01,Royal Berkshire Hospital,Reading,0
-RKGA1,Ysbyty Glan Clwyd,Rhyl,0
-RM301,Salford Royal Hospital,Salford,0
-RK7CC,Northern General Hospital,Sheffield,1
-RLZ01,Royal Shrewsbury Hospital,Shrewsbury,0
-RHM02,Southampton Childrens Hospital,Southampton,0
-RAJ01,Southend Hospital,Southend-on-Sea,0
-RAQ01,Lister Hospital,Stevenage,0
-RJE01,University Hospital of North Staffordshire,Stoke-on-Trent,0
-RLNGH,Sunderland Royal Hospital,Sunderland,0
-RQHC7,Morriston Hospital,Swansea,0
-REF12,Royal Cornwall Hospital (Treliske),Truro,0
-RBL14,Arrowe Park Hospital,Wirral,0
-RL403,New Cross Hospital,Wolverhampton,0
-RKHA4,Wrexham Maelor Hospital,Wrexham,0
-RCB55,York District General Hospital,York,0

data/db/seeds/default/hospitals/hospitals.rb

@@ -1,17 +0,0 @@
-module Renalware
-  log "Adding Hospitals" do
-
-    file_path = File.join(File.dirname(__FILE__), "hospital_centres.csv")
-
-    Hospitals::Centre.transaction do
-      CSV.foreach(file_path, headers: true) do |row|
-        Hospitals::Centre.find_or_create_by!(code: row["code"]) do |hospital|
-          hospital.name = row["name"]
-          hospital.location = row["location"]
-          hospital.active = true
-          hospital.is_transplant_site = (row["is_transplant_site"] == "1")
-        end
-      end
-    end
-  end
-end

data/db/seeds/default/hospitals/seeds.rb

@@ -1,2 +0,0 @@
-require_relative "./hospitals"
-require_relative "./dialysis_units"