relaton-bipm 2.1.2 → 2.2.0.pre.alpha.1

data/grammars/relaton-bipm-compile.rng

@@ -1,11 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<grammar xmlns="http://relaxng.org/ns/structure/1.0">
-  <include href="basicdoc.rng"/>
-  <include href="relaton-bipm.rng"/>
-  <start>
-    <choice>
-      <ref name="bibitem"/>
-      <ref name="bibdata"/>
-    </choice>
-  </start>
-</grammar>

data/grammars/relaton-bipm.rng

@@ -1,89 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<grammar xmlns:a="http://relaxng.org/ns/compatibility/annotations/1.0" xmlns="http://relaxng.org/ns/structure/1.0">
-  <include href="biblio-standoc.rng">
-    <define name="DocumentType">
-      <choice>
-        <value>brochure</value>
-        <value>mise-en-pratique</value>
-        <value>rapport</value>
-        <value>monographie</value>
-        <value>guide</value>
-        <value>meeting-report</value>
-        <value>technical-report</value>
-        <value>working-party-note</value>
-        <value>strategy</value>
-        <value>cipm-mra</value>
-        <value>resolution</value>
-        <value>policy</value>
-      </choice>
-    </define>
-    <define name="structuredidentifier">
-      <element name="structuredidentifier">
-        <element name="docnumber">
-          <text/>
-        </element>
-        <optional>
-          <element name="part">
-            <text/>
-          </element>
-        </optional>
-        <optional>
-          <element name="appendix">
-            <text/>
-          </element>
-        </optional>
-      </element>
-    </define>
-  </include>
-  <define name="BibDataExtensionType" combine="interleave">
-    <optional>
-      <ref name="comment-period">
-        <a:documentation>Period during which comments are allowed on the document draft</a:documentation>
-      </ref>
-    </optional>
-    <optional>
-      <ref name="si-aspect">
-        <a:documentation>The domain of SI covered by the document; used to select logo in PDF cover page. The logo nominates one primary SI base units, and defining consonants for that unit and possibly others as well</a:documentation>
-      </ref>
-    </optional>
-    <optional>
-      <ref name="meeting-note">
-        <a:documentation>Note on when and where a guide was adopted</a:documentation>
-      </ref>
-    </optional>
-  </define>
-  <define name="comment-period">
-    <element name="comment-period">
-      <element name="from">
-        <ref name="ISO8601Date"/>
-      </element>
-      <element name="to">
-        <ref name="ISO8601Date"/>
-      </element>
-    </element>
-  </define>
-  <define name="si-aspect">
-    <element name="si-aspect">
-      <choice>
-        <value>A_e_deltanu</value>
-        <value>A_e</value>
-        <value>cd_Kcd_h_deltanu</value>
-        <value>cd_Kcd</value>
-        <value>full</value>
-        <value>K_k_deltanu</value>
-        <value>K_k</value>
-        <value>kg_h_c_deltanu</value>
-        <value>kg_h</value>
-        <value>m_c_deltanu</value>
-        <value>m_c</value>
-        <value>mol_NA</value>
-        <value>s_deltanu</value>
-      </choice>
-    </element>
-  </define>
-  <define name="meeting-note">
-    <element name="meeting-note">
-      <text/>
-    </element>
-  </define>
-</grammar>

data/lib/relaton/bipm/rawdata_bipm_metrologia/article_parser.rb

@@ -1,456 +0,0 @@
-module Relaton::Bipm
-  module RawdataBipmMetrologia
-    class ArticleParser
-      ATTRS = %i[docidentifier title contributor date copyright abstract relation series
-                 extent type source ext].freeze
-      #
-      # Create new parser and parse document
-      #
-      # @param [String] path path to XML file
-      #
-      # @return [Relaton::Bipm::ItemDate] document
-      #
-      def self.parse(path, errors = {})
-        doc = Nokogiri::XML(File.read(path, encoding: "UTF-8"))
-        journal, volume, article = path.split("/")[-2].split("_")[1..]
-        new(doc, journal, volume, article, errors).parse
-      end
-
-      #
-      # Initialize parser
-      #
-      # @param [Nokogiri::XML::Document] doc XML document
-      # @param [String] journal journal
-      # @param [String] volume volume
-      # @param [String] article article
-      # @param [Hash] errors errors hash
-      #
-      def initialize(doc, journal, volume, article, errors = {})
-        @doc = doc.at "/article"
-        @journal = journal
-        @volume = volume
-        @article = article
-        @meta = doc.at("/article/front/article-meta")
-        @errors = errors
-      end
-
-      #
-      # Create new document
-      #
-      # @return [Relaton::Bipm::ItemData] document
-      #
-      def parse
-        attrs = ATTRS.to_h { |a| [a, send("parse_#{a}")] }
-        ItemData.new(**attrs)
-      end
-
-      #
-      # Parse docid
-      #
-      # @return [Array<Relaton::Bib::DocumentIdentifier>] array of document identifiers
-      #
-      def parse_docidentifier
-        primary_id = create_docidentifier pubid, "BIPM", true
-        result = @meta.xpath("./article-id[@pub-id-type='doi']").each_with_object([primary_id]) do |id, m|
-          m << create_docidentifier(id.text, id["pub-id-type"])
-        end
-        @errors[:article_docidentifier] &&= result.empty?
-        result
-      end
-
-      #
-      # Build primary publication identifier string (e.g. "Metrologia 55 1 125")
-      #
-      # @return [String] pubid
-      #
-      def pubid
-        @pubid ||= "#{journal_title} #{volume_issue_article}"
-      end
-
-      #
-      # Parse volume, issue and page
-      #
-      # @return [String] volume issue page
-      #
-      def volume_issue_article
-        [@journal, @volume, @article].compact.join(" ")
-      end
-
-      # def article
-      #   @meta.at("./article-id[@pub-id-type='manuscript']").text.match(/[^_]+$/).to_s
-      # end
-
-      #
-      # Parse journal title
-      #
-      # @return [String] journal title
-      #
-      def journal_title
-        return @journal_title if defined? @journal_title
-
-        @journal_title = @doc.at("./front/journal-meta/journal-title-group/journal-title")&.text
-        @errors[:journal_title] &&= @journal_title.nil? || @journal_title.empty?
-        @journal_title
-      end
-
-      #
-      # Create document identifier
-      #
-      # @param [String] id document id
-      # @param [String] type id type
-      # @param [Boolean, nil] primary is primary id
-      #
-      # @return [Relaton::Bib::Docidentifier] document identifier
-      #
-      def create_docidentifier(id, type, primary = nil)
-        Relaton::Bib::Docidentifier.new content: id, type: type, primary: primary
-      end
-
-      #
-      # Parse title
-      #
-      # @return [Array<Relaton::Bib::TypedTitleString>] array of title strings
-      #
-      def parse_title
-        result = @meta.xpath("./title-group/article-title").map do |t|
-          next if t.text.empty?
-
-          Relaton::Bib::Title.new(content: t.inner_html, language: t[:"xml:lang"], script: "Latn")
-        end.compact
-        @errors[:article_title] &&= result.empty?
-        result
-      end
-
-      #
-      # Parse contributor
-      #
-      # @return [Array<Relaton::Bib::Contributor>] array of contributors
-      #
-      def parse_contributor
-        result = @meta.xpath("./contrib-group/contrib").map do |c|
-          role = Relaton::Bib::Contributor::Role.new(type: c[:"contrib-type"])
-          attrs = { person: create_person(c), organization: create_organization(c), role: [role] }
-          Relaton::Bib::Contributor.new(**attrs)
-        end
-        @errors[:article_contributor] &&= result.empty?
-        result
-      end
-
-      def create_person(contrib)
-        name = contrib.at("./name")
-        @errors[:article_contributor_person] &&= name.nil? || name.text.empty?
-        return if name.nil? || name.text.empty?
-
-        Relaton::Bib::Person.new name: fullname(name), affiliation: affiliation(contrib)
-      end
-
-      def create_organization(contrib)
-        org = contrib.at("./collab")
-        @errors[:article_contributor_organization] &&= org.nil? || org.text.empty?
-        return if org.nil? || org.text.empty?
-
-        name = Relaton::Bib::TypedLocalizedString.new(content: org.text)
-        Relaton::Bib::Organization.new name: [name]
-      end
-
-      #
-      # Parse affiliations
-      #
-      # @param [Nokogiri::XML::Element] contrib contributor element
-      #
-      # @return [Array<Relaton::Bib::Affiliation>] array of affiliations
-      #
-      def affiliation(contrib)
-        aff = contrib.xpath("./xref[@ref-type='aff']").map do |x|
-          a = @meta.at("./contrib-group/aff[@id='#{x[:rid]}']") # /label/following-sibling::node()")
-            parse_affiliation a
-        end.compact
-        @errors[:article_affiliation] &&= aff.empty?
-        aff
-      end
-
-      def parse_affiliation(aff)
-        text = aff.xpath("text()|sup|sub").to_xml.split(",").map(&:strip).reject(&:empty?).join(", ")
-        text = CGI::unescapeHTML(text)
-        return if text.include?("Permanent address:") || text == "Germany" ||
-          text.start_with?("Guest") || text.start_with?("Deceased") ||
-          text.include?("Author to whom any correspondence should be addressed")
-
-        args = {}
-        institution = aff.at('institution')
-        if institution
-          name = institution.text
-          return if name == "1005 Southover Lane"
-
-          args[:subdivision] = parse_division(aff)
-          args[:address] = parse_address(aff)
-        else
-          name = text
-        end
-        args[:name] = [Relaton::Bib::TypedLocalizedString.new(content: name)]
-        org = Relaton::Bib::Organization.new(**args)
-        Relaton::Bib::Affiliation.new(organization: org)
-      end
-
-      def parse_division(aff)
-        div = aff.xpath("text()[following-sibling::institution]").text.gsub(/^\W*|\W*$/, "")
-        @errors[:article_affiliation_division] &&= div.empty?
-        return [] if div.empty?
-
-        name = Relaton::Bib::TypedLocalizedString.new(content: div, language: "en", script: "Latn")
-        [Relaton::Bib::Subdivision.new(name: [name])]
-      end
-
-      def parse_address(aff)
-        address = []
-        addr = aff.xpath("text()[preceding-sibling::institution]").text.gsub(/^\W*|\W*$/, "")
-        address << addr unless addr.empty?
-        country = aff.at('country')
-        address << country.text if country && !country.text.empty?
-        address = address.join(", ")
-        @errors[:article_affiliation_address] &&= address.empty?
-        return [] if address.empty?
-
-        [Relaton::Bib::Address.new(formatted_address: address)]
-      end
-
-      #
-      # Create full name
-      #
-      # @param [Nokogiri::XML::Element] contrib contributor element
-      #
-      # @return [Relaton::Bib::FullName] full name
-      #
-      def fullname(name)
-        cname = [name.at("./given-names"), name.at("./surname")].compact.map(&:text).join(" ")
-        @errors[:article_fullname] &&= cname.empty?
-        return if cname.empty?
-
-        completename = Relaton::Bib::LocalizedString.new content: cname, language: "en", script: "Latn"
-        Relaton::Bib::FullName.new completename: completename
-      end
-
-      #
-      # Parse forename
-      #
-      # @param [String] given_name given name
-      #
-      # @return [Array<Relaton::Bib::Forename>] array of forenames
-      #
-      # def forename(given_name) # rubocop:disable Metrics/MethodLength
-      #   return [] unless given_name
-
-      #   given_name.text.scan(/(\w+)(?:\s(\w)(?:\s|$))?/).map do |nm, int|
-      #     if nm.size == 1
-      #       name = nil
-      #       init = nm
-      #     else
-      #       name = nm
-      #       init = int
-      #     end
-      #     Relaton::Bib::Forename.new(content: name, language: ["en"], script: ["Latn"], initial: init)
-      #   end
-      # end
-
-      #
-      # Parse date
-      #
-      # @return [Array<Relaton::Bib::Date>] array of dates
-      #
-      def parse_date
-        at = dates.min
-        @errors[:article_date] &&= at.nil?
-        return [] unless at
-
-        [Relaton::Bib::Date.new(type: "published", at: at)]
-      end
-
-      #
-      # Parse date
-      #
-      # @yield [date, type] date and type
-      #
-      # @return [Array<String, Object>] string date or whatever block returns
-      #
-      def dates
-        @meta.xpath("./pub-date").map do |d|
-          month = date_part(d, "month")
-          day = date_part(d, "day")
-          date = "#{d.at('./year').text}-#{month}-#{day}"
-          block_given? ? yield(date, d[:"pub-type"]) : date
-        end
-      end
-
-      def date_part(date, type)
-        part = date.at("./#{type}")&.text
-        return "01" if part.nil? || part.empty?
-
-        part.rjust(2, "0")
-      end
-
-      #
-      # Parse copyright
-      #
-      # @return [Array<Relaton::Bib::Copyright>] array of copyright associations
-      #
-      def parse_copyright
-        result = @meta.xpath("./permissions").each_with_object([]) do |l, m|
-          from = l.at("./copyright-year")
-          next unless from
-
-          owner = l.at("./copyright-statement").text.split(" & ").map do |c|
-            /(?<name>\p{L}+(?:\s\p{L}+)*)/ =~ c
-            org_name = Relaton::Bib::TypedLocalizedString.new(content: name, language: "en", script: "Latn")
-            org = Relaton::Bib::Organization.new name: [org_name]
-            Relaton::Bib::ContributionInfo.new(organization: org)
-          end
-          m << Relaton::Bib::Copyright.new(owner: owner, from: from.text)
-        end
-        @errors[:article_copyright] &&= result.empty?
-        result
-      end
-
-      #
-      # Parse abstract
-      #
-      # @return [Array<Relaton::Bib::LocalizedMarkedUpString>] array of abstracts
-      #
-      def parse_abstract
-        result = @meta.xpath("./abstract").map do |a|
-          Relaton::Bib::Abstract.new(
-            content: a.inner_html, language: a[:"xml:lang"], script: "Latn",
-          )
-        end
-        @errors[:article_abstract] &&= result.empty?
-        result
-      end
-
-      #
-      # Parese relation
-      #
-      # @return [Array<Relaton::Bib::Relation>] array of document relations
-      #
-      def parse_relation
-        rels = dates do |d, t|
-          Relaton::Bib::Relation.new(type: "hasManifestation", bibitem: bibitem(d, t))
-        end
-        @errors[:article_relation] &&= rels.empty?
-        rels + parse_references
-      end
-
-      #
-      # Parse back/ref-list references as "cites" relations
-      #
-      # @return [Array<Relaton::Bib::Relation>] array of "cites" relations
-      #
-      def parse_references
-        refs = @doc.xpath("./back/ref-list/ref").filter_map do |ref|
-          citation = ref.at("./element-citation")
-          next unless citation
-
-          Relaton::Bib::Relation.new(type: "cites", bibitem: citation_bibitem(citation))
-        end
-        @errors[:article_references] &&= refs.empty?
-        refs
-      end
-
-      #
-      # Build bibitem from an element-citation
-      #
-      # @param [Nokogiri::XML::Element] citation element-citation node
-      #
-      # @return [Relaton::Bipm::ItemData] bibitem
-      #
-      def citation_bibitem(citation)
-        attrs = {}
-        doi = citation.at("./pub-id[@pub-id-type='doi']")&.text
-        if doi && !doi.empty?
-          @errors[:article_citation_doi] &&= false
-          attrs[:docidentifier] = [Relaton::Bib::Docidentifier.new(content: doi, type: "doi")]
-          attrs[:source] = [Relaton::Bib::Uri.new(content: "https://doi.org/#{doi}", type: "doi")]
-        else
-          @errors[:article_citation_doi] &&= true
-        end
-        source = citation.at("./source")&.text
-        if source && !source.empty?
-          @errors[:article_citation_title] &&= false
-          attrs[:title] = [Relaton::Bib::Title.new(content: source)]
-        else
-          @errors[:article_citation_title] &&= true
-        end
-        year = citation.at("./year")&.text
-        if year && !year.empty?
-          @errors[:article_citation_date] &&= false
-          attrs[:date] = [Relaton::Bib::Date.new(type: "published", at: year)]
-        else
-          @errors[:article_citation_date] &&= true
-        end
-        ItemData.new(**attrs)
-      end
-
-      #
-      # Create bibitem
-      #
-      # @param [String] date
-      # @param [String] type date type
-      #
-      # @return [Relaton::Bipm::BipmBibliographicItem] bibitem
-      #
-      def bibitem(date, type)
-        dt = Relaton::Bib::Date.new(type: type, at: date)
-        carrier = type == "epub" ? "online" : "print"
-        medium = Relaton::Bib::Medium.new carrier: carrier
-        fref = Relaton::Bib::Formattedref.new(content: pubid)
-        docid = [create_docidentifier(pubid, "BIPM", true)]
-        ItemData.new(formattedref: fref, docidentifier: docid, date: [dt], medium: medium)
-      end
-
-      #
-      # Parse series
-      #
-      # @return [Array<Relaton::Bib::Series>] array of series
-      #
-      def parse_series
-        title = Relaton::Bib::Title.new(content: journal_title, language: "en", script: "Latn")
-        [Relaton::Bib::Series.new(title: [title])]
-      end
-
-      #
-      # Parse extent
-      #
-      # @return [Array<Relaton::Bib::Extent>] array of extents
-      #
-      def parse_extent
-        locs = @meta.xpath("./volume|./issue|./fpage").map do |e|
-          if e.name == "fpage"
-            type = "page"
-            to = @meta.at("./lpage")&.text
-          else
-            type = e.name
-          end
-          Relaton::Bib::Locality.new type: type, reference_from: e.text, reference_to: to
-        end
-        @errors[:article_extent] &&= locs.empty?
-        return [] if locs.empty?
-
-        [Relaton::Bib::Extent.new(locality: locs)]
-      end
-
-      def parse_type = "article"
-
-      def parse_source
-        result = @meta.xpath("./article-id[@pub-id-type='doi']").each_with_object([]) do |l, a|
-          url = "https://doi.org/#{l.text}"
-          a << Relaton::Bib::Uri.new(content: url, type: "src")
-          a << Relaton::Bib::Uri.new(content: url, type: "doi")
-        end
-        @errors[:article_source] &&= result.empty?
-        result
-      end
-
-      def parse_ext = Ext.new(doctype: parse_doctype)
-
-      def parse_doctype = Doctype.new(content: "article")
-    end
-  end
-end