rbbt 1.1.8 → 1.2.1

data/test/rbbt/util/test_simpleDSL.rb

@@ -0,0 +1,57 @@
+require File.dirname(__FILE__) + '/../../test_helper'
+require 'rbbt/util/simpleDSL'
+require 'test/unit'
+
+class TestDSL < Test::Unit::TestCase
+  class Test < SimpleDSL
+
+    def action(name, *args, &block)
+      @actions[name] = args.first
+    end
+
+    def initialize(file=nil,&block)
+      @actions = {}
+      super(:action, file, &block)
+    end
+
+    def actions
+      @actions
+    end
+
+  end
+
+  def setup 
+    
+    @parser = Test.new do
+      action1 "Hello"
+      action2 "Good bye"
+    end
+  end
+
+  def test_config
+    config = <<-EOC
+  action1("Hello")
+  action2("Good bye")
+    EOC
+
+    assert_equal(@parser.config(:action),config)
+  end
+
+  def test_actions
+    assert_equal({:action1=>"Hello", :action2=>"Good bye"}, @parser.actions)
+  end
+
+  def test_method_missing
+    assert_raise(NoMethodError){@parser.cues}
+  end
+
+  def test_parse
+    @parser.parse :action do
+      action3 "Back again"
+    end
+
+     assert_equal({:action1 =>"Hello", :action2 =>"Good bye", :action3 =>"Back again"}, @parser.actions)
+
+  end
+
+end

data/test/rbbt/util/test_tmpfile.rb

@@ -0,0 +1,21 @@
+require File.dirname(__FILE__) + '/../../test_helper'
+require 'rbbt/util/tmpfile'
+require 'test/unit'
+
+class TestTmpFile < Test::Unit::TestCase
+
+  def test_tmp_file
+    assert(TmpFile.tmp_file("test") =~ /tmp\/test\d+$/)
+  end
+
+  def test_do_tmp_file
+    content = "Hello World!"
+    TmpFile.with_file(content) do |file|
+      assert_equal content, File.open(file).read
+    end
+  end
+
+
+end
+
+

data/test/test_helper.rb

@@ -0,0 +1,4 @@
+require 'test/unit'
+$LOAD_PATH.unshift(File.join(File.dirname(__FILE__), '..', 'lib'))
+$LOAD_PATH.unshift(File.dirname(__FILE__))
+

data/test/test_rbbt.rb

@@ -0,0 +1,11 @@
+require File.dirname(__FILE__) + '/test_helper.rb'
+
+class TestRbbt < Test::Unit::TestCase
+
+  def setup
+  end
+  
+  def test_truth
+    assert true
+  end
+end

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification 
 name: rbbt
 version: !ruby/object:Gem::Version 
-  version: 1.1.8
+  version: 1.2.1
 platform: ruby
 authors: 
 - Miguel Vazquez
@@ -9,7 +9,7 @@ autorequire:
 bindir: bin
 cert_chain: []
 
-date: 2010-01-05 00:00:00 +01:00
+date: 2010-02-15 00:00:00 +01:00
 default_executable: rbbt_config
 dependencies: 
 - !ruby/object:Gem::Dependency 
@@ -74,6 +74,7 @@ extra_rdoc_files:
 - LICENSE
 - README.rdoc
 files: 
+- bin/rbbt_config
 - install_scripts/classifier/R/classify.R
 - install_scripts/classifier/Rakefile
 - install_scripts/get_abner.sh
@@ -89,16 +90,16 @@ files:
 - install_scripts/norm/config/cue_default.rb
 - install_scripts/norm/config/tokens_default.rb
 - install_scripts/norm/functions.sh
+- install_scripts/organisms/Ath.Rakefile
+- install_scripts/organisms/Cal.Rakefile
+- install_scripts/organisms/Cel.Rakefile
+- install_scripts/organisms/Hsa.Rakefile
+- install_scripts/organisms/Mmu.Rakefile
 - install_scripts/organisms/Rakefile
-- install_scripts/organisms/cgd.Rakefile
-- install_scripts/organisms/human.Rakefile
-- install_scripts/organisms/mgi.Rakefile
-- install_scripts/organisms/pombe.Rakefile
+- install_scripts/organisms/Rno.Rakefile
+- install_scripts/organisms/Sce.Rakefile
+- install_scripts/organisms/Spo.Rakefile
 - install_scripts/organisms/rake-include.rb
-- install_scripts/organisms/rgd.Rakefile
-- install_scripts/organisms/sgd.Rakefile
-- install_scripts/organisms/tair.Rakefile
-- install_scripts/organisms/worm.Rakefile
 - install_scripts/wordlists/consonants
 - install_scripts/wordlists/stopwords
 - lib/rbbt.rb
@@ -159,5 +160,31 @@ rubygems_version: 1.3.5
 signing_key: 
 specification_version: 3
 summary: Bioinformatics and text mining toolbox
-test_files: []
-
+test_files: 
+- test/test_rbbt.rb
+- test/rbbt/bow/test_bow.rb
+- test/rbbt/bow/test_classifier.rb
+- test/rbbt/bow/test_dictionary.rb
+- test/rbbt/sources/test_organism.rb
+- test/rbbt/sources/test_biomart.rb
+- test/rbbt/sources/test_pubmed.rb
+- test/rbbt/sources/test_polysearch.rb
+- test/rbbt/sources/test_biocreative.rb
+- test/rbbt/sources/test_entrez.rb
+- test/rbbt/sources/test_go.rb
+- test/rbbt/ner/test_rner.rb
+- test/rbbt/ner/test_dictionaryNER.rb
+- test/rbbt/ner/test_banner.rb
+- test/rbbt/ner/test_rnorm.rb
+- test/rbbt/ner/test_regexpNER.rb
+- test/rbbt/ner/test_abner.rb
+- test/rbbt/ner/rnorm/test_cue_index.rb
+- test/rbbt/ner/rnorm/test_tokens.rb
+- test/rbbt/util/test_misc.rb
+- test/rbbt/util/test_tmpfile.rb
+- test/rbbt/util/test_arrayHash.rb
+- test/rbbt/util/test_filecache.rb
+- test/rbbt/util/test_simpleDSL.rb
+- test/rbbt/util/test_open.rb
+- test/rbbt/util/test_index.rb
+- test/test_helper.rb