RubyGems - rbbt - Versions diffs - 1.0.0 - Mend

rbbt 1.0.0

Files changed (59) hide show

data/LICENSE +20 -0
data/README.rdoc +17 -0
data/bin/rbbt_config +180 -0
data/install_scripts/classifier/R/classify.R +36 -0
data/install_scripts/classifier/Rakefile +140 -0
data/install_scripts/get_abner.sh +2 -0
data/install_scripts/get_banner.sh +25 -0
data/install_scripts/get_biocreative.sh +72 -0
data/install_scripts/get_crf++.sh +26 -0
data/install_scripts/get_entrez.sh +4 -0
data/install_scripts/get_go.sh +4 -0
data/install_scripts/get_polysearch.sh +8 -0
data/install_scripts/ner/Rakefile +206 -0
data/install_scripts/ner/config/default.rb +52 -0
data/install_scripts/norm/Rakefile +218 -0
data/install_scripts/norm/config/cue_default.rb +10 -0
data/install_scripts/norm/config/tokens_default.rb +79 -0
data/install_scripts/norm/functions.sh +21 -0
data/install_scripts/organisms/Rakefile +25 -0
data/install_scripts/organisms/cgd.Rakefile +84 -0
data/install_scripts/organisms/human.Rakefile +145 -0
data/install_scripts/organisms/mgi.Rakefile +77 -0
data/install_scripts/organisms/pombe.Rakefile +40 -0
data/install_scripts/organisms/rake-include.rb +258 -0
data/install_scripts/organisms/rgd.Rakefile +88 -0
data/install_scripts/organisms/sgd.Rakefile +66 -0
data/install_scripts/organisms/tair.Rakefile +54 -0
data/install_scripts/organisms/worm.Rakefile +109 -0
data/install_scripts/stopwords +1 -0
data/install_scripts/wordlists/consonants +897 -0
data/install_scripts/wordlists/stopwords +1 -0
data/lib/rbbt/bow/bow.rb +87 -0
data/lib/rbbt/bow/classifier.rb +118 -0
data/lib/rbbt/bow/dictionary.rb +218 -0
data/lib/rbbt/ner/abner.rb +34 -0
data/lib/rbbt/ner/banner.rb +73 -0
data/lib/rbbt/ner/regexpNER.rb +62 -0
data/lib/rbbt/ner/rner.rb +227 -0
data/lib/rbbt/ner/rnorm/cue_index.rb +80 -0
data/lib/rbbt/ner/rnorm/tokens.rb +213 -0
data/lib/rbbt/ner/rnorm.rb +142 -0
data/lib/rbbt/sources/biocreative.rb +75 -0
data/lib/rbbt/sources/biomart.rb +106 -0
data/lib/rbbt/sources/entrez.rb +211 -0
data/lib/rbbt/sources/go.rb +40 -0
data/lib/rbbt/sources/organism.rb +197 -0
data/lib/rbbt/sources/polysearch.rb +88 -0
data/lib/rbbt/sources/pubmed.rb +111 -0
data/lib/rbbt/util/arrayHash.rb +255 -0
data/lib/rbbt/util/filecache.rb +72 -0
data/lib/rbbt/util/index.rb +69 -0
data/lib/rbbt/util/misc.rb +101 -0
data/lib/rbbt/util/open.rb +207 -0
data/lib/rbbt/util/simpleDSL.rb +87 -0
data/lib/rbbt/util/tmpfile.rb +19 -0
data/lib/rbbt/version.rb +10 -0
data/lib/rbbt.rb +86 -0
data/tasks/install.rake +123 -0
metadata +114 -0

data/install_scripts/wordlists/consonants ADDED Viewed

@@ -0,0 +1,897 @@
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