rbbt-util 5.25.13 → 5.25.14

checksums.yaml

@@ -1,7 +1,7 @@
 ---
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-  data.tar.gz: d2b90c81869aaf9003d50e37efff5caf9ecfb909
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+  data.tar.gz: 2bc06d77e9770da322089b495807c7b9478dcd19
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data/bin/rbbt

@@ -1,5 +1,11 @@
 #!/usr/bin/env ruby
 
+class CmdStop < Exception
+  attr_accessor :exit_status
+  def initialize(exit_status = 0)
+    @exit_status = exit_status
+  end
+end
 dev_dir = nil
 if _i = ARGV.index("--dev")
   dev_dir = ARGV[_i+1]
@@ -248,6 +254,9 @@ rescue ParameterException
   puts
   exit -1
 rescue SystemExit
+rescue CmdStop
+  exit_status = $!.exit_status
+  exit exit_status
 rescue Exception
   Log.exception $!
   exit -1

data/lib/rbbt/hpc.rb

@@ -3,6 +3,13 @@ require 'rbbt/util/cmd'
 
 module Marenostrum
   SERVER='mn1'
+  class SBATCH < Exception; 
+    attr_accessor :directory
+    def initialize(directory)
+      @directory = directory
+    end
+  end
+
   module SLURM
 
     def self.template(args, options = {})
@@ -256,10 +263,8 @@ EOF
         if File.exists?(fout)
           return
         elsif dry_run
-          STDERR.puts Log.color(:magenta, "Prepared work directory: ")
-          puts workdir
           STDERR.puts Log.color(:magenta, "To execute run: sbatch '#{workdir}/command.slurm'")
-          Kernel.exit! -2
+          raise Marenostrum::SBATCH, workdir
         else
           Open.rm fsync
           Open.rm fexit

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: rbbt-util
 version: !ruby/object:Gem::Version
-  version: 5.25.13
+  version: 5.25.14
 platform: ruby
 authors:
 - Miguel Vazquez