rbbt-util 5.25.13 → 5.25.14
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- checksums.yaml +4 -4
- data/bin/rbbt +9 -0
- data/lib/rbbt/hpc.rb +8 -3
- metadata +1 -1
checksums.yaml
CHANGED
@@ -1,7 +1,7 @@
|
|
1
1
|
---
|
2
2
|
SHA1:
|
3
|
-
metadata.gz:
|
4
|
-
data.tar.gz:
|
3
|
+
metadata.gz: e5aabac2c8c621d8ee26f59822fdb44044de2150
|
4
|
+
data.tar.gz: 2bc06d77e9770da322089b495807c7b9478dcd19
|
5
5
|
SHA512:
|
6
|
-
metadata.gz:
|
7
|
-
data.tar.gz:
|
6
|
+
metadata.gz: f99b7a4494a17ef70af8a9cd26fdaa7b835745b6f12d5a90103eab67de9c7621f0694c4a9e067be0d932e906839bb12cf16f99b42d060323460e8b896e02bda4
|
7
|
+
data.tar.gz: b601014d631449cfd2363461f9aa83f590fc4998ecd14ddc0fb4f21d7b6577e6015c9b33f15e57881dc82d8c7c94d241665723c46246db79c674c105e3aee9b0
|
data/bin/rbbt
CHANGED
@@ -1,5 +1,11 @@
|
|
1
1
|
#!/usr/bin/env ruby
|
2
2
|
|
3
|
+
class CmdStop < Exception
|
4
|
+
attr_accessor :exit_status
|
5
|
+
def initialize(exit_status = 0)
|
6
|
+
@exit_status = exit_status
|
7
|
+
end
|
8
|
+
end
|
3
9
|
dev_dir = nil
|
4
10
|
if _i = ARGV.index("--dev")
|
5
11
|
dev_dir = ARGV[_i+1]
|
@@ -248,6 +254,9 @@ rescue ParameterException
|
|
248
254
|
puts
|
249
255
|
exit -1
|
250
256
|
rescue SystemExit
|
257
|
+
rescue CmdStop
|
258
|
+
exit_status = $!.exit_status
|
259
|
+
exit exit_status
|
251
260
|
rescue Exception
|
252
261
|
Log.exception $!
|
253
262
|
exit -1
|
data/lib/rbbt/hpc.rb
CHANGED
@@ -3,6 +3,13 @@ require 'rbbt/util/cmd'
|
|
3
3
|
|
4
4
|
module Marenostrum
|
5
5
|
SERVER='mn1'
|
6
|
+
class SBATCH < Exception;
|
7
|
+
attr_accessor :directory
|
8
|
+
def initialize(directory)
|
9
|
+
@directory = directory
|
10
|
+
end
|
11
|
+
end
|
12
|
+
|
6
13
|
module SLURM
|
7
14
|
|
8
15
|
def self.template(args, options = {})
|
@@ -256,10 +263,8 @@ EOF
|
|
256
263
|
if File.exists?(fout)
|
257
264
|
return
|
258
265
|
elsif dry_run
|
259
|
-
STDERR.puts Log.color(:magenta, "Prepared work directory: ")
|
260
|
-
puts workdir
|
261
266
|
STDERR.puts Log.color(:magenta, "To execute run: sbatch '#{workdir}/command.slurm'")
|
262
|
-
|
267
|
+
raise Marenostrum::SBATCH, workdir
|
263
268
|
else
|
264
269
|
Open.rm fsync
|
265
270
|
Open.rm fexit
|