rbbt-util 5.43.0 → 5.44.1
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- checksums.yaml +4 -4
- data/etc/app.d/base.rb +1 -1
- data/lib/rbbt/association/util.rb +1 -1
- data/lib/rbbt/hpc/batch.rb +19 -17
- data/lib/rbbt/persist/tsv/sharder.rb +1 -1
- data/lib/rbbt/tsv/accessor.rb +6 -11
- data/lib/rbbt/tsv/dumper.rb +21 -10
- data/lib/rbbt/tsv/index.rb +2 -1
- data/lib/rbbt/util/misc/math.rb +0 -1
- data/lib/rbbt/util/misc/omics.rb +2 -1
- data/lib/rbbt/util/misc/ssw.rb +298 -0
- data/lib/rbbt/util/open.rb +1 -1
- data/lib/rbbt/workflow/step/info.rb +3 -2
- data/lib/rbbt/workflow/step.rb +2 -1
- data/python/rbbt/__init__.py +2 -2
- data/share/rbbt_commands/workflow/server +6 -1
- data/share/rbbt_commands/workflow/task +1 -1
- metadata +5 -220
- data/test/rbbt/annotations/test_util.rb +0 -43
- data/test/rbbt/association/test_database.rb +0 -87
- data/test/rbbt/association/test_index.rb +0 -127
- data/test/rbbt/association/test_item.rb +0 -15
- data/test/rbbt/association/test_open.rb +0 -63
- data/test/rbbt/association/test_util.rb +0 -108
- data/test/rbbt/entity/test_identifiers.rb +0 -34
- data/test/rbbt/hpc/orchestrate/test_batches.rb +0 -70
- data/test/rbbt/hpc/orchestrate/test_chains.rb +0 -108
- data/test/rbbt/hpc/orchestrate/test_rules.rb +0 -59
- data/test/rbbt/hpc/test_batch.rb +0 -64
- data/test/rbbt/hpc/test_hpc_test_workflows.rb +0 -0
- data/test/rbbt/hpc/test_orchestrate.rb +0 -144
- data/test/rbbt/hpc/test_pbs.rb +0 -43
- data/test/rbbt/hpc/test_slurm.rb +0 -28
- data/test/rbbt/knowledge_base/test_enrichment.rb +0 -50
- data/test/rbbt/knowledge_base/test_entity.rb +0 -62
- data/test/rbbt/knowledge_base/test_query.rb +0 -46
- data/test/rbbt/knowledge_base/test_registry.rb +0 -74
- data/test/rbbt/knowledge_base/test_syndicate.rb +0 -48
- data/test/rbbt/knowledge_base/test_traverse.rb +0 -133
- data/test/rbbt/persist/test_tsv.rb +0 -88
- data/test/rbbt/persist/tsv/test_cdb.rb +0 -18
- data/test/rbbt/persist/tsv/test_kyotocabinet.rb +0 -27
- data/test/rbbt/persist/tsv/test_leveldb.rb +0 -18
- data/test/rbbt/persist/tsv/test_lmdb.rb +0 -20
- data/test/rbbt/persist/tsv/test_sharder.rb +0 -164
- data/test/rbbt/persist/tsv/test_tokyocabinet.rb +0 -262
- data/test/rbbt/resource/test_path.rb +0 -49
- data/test/rbbt/test_annotations.rb +0 -167
- data/test/rbbt/test_association.rb +0 -103
- data/test/rbbt/test_entity.rb +0 -252
- data/test/rbbt/test_fix_width_table.rb +0 -135
- data/test/rbbt/test_knowledge_base.rb +0 -226
- data/test/rbbt/test_monitor.rb +0 -11
- data/test/rbbt/test_packed_index.rb +0 -68
- data/test/rbbt/test_persist.rb +0 -85
- data/test/rbbt/test_resource.rb +0 -110
- data/test/rbbt/test_tsv.rb +0 -669
- data/test/rbbt/test_workflow.rb +0 -609
- data/test/rbbt/tsv/parallel/test_through.rb +0 -40
- data/test/rbbt/tsv/parallel/test_traverse.rb +0 -456
- data/test/rbbt/tsv/test_accessor.rb +0 -319
- data/test/rbbt/tsv/test_attach.rb +0 -715
- data/test/rbbt/tsv/test_change_id.rb +0 -61
- data/test/rbbt/tsv/test_csv.rb +0 -49
- data/test/rbbt/tsv/test_excel.rb +0 -171
- data/test/rbbt/tsv/test_field_index.rb +0 -19
- data/test/rbbt/tsv/test_filter.rb +0 -187
- data/test/rbbt/tsv/test_index.rb +0 -308
- data/test/rbbt/tsv/test_manipulate.rb +0 -334
- data/test/rbbt/tsv/test_marshal.rb +0 -24
- data/test/rbbt/tsv/test_matrix.rb +0 -20
- data/test/rbbt/tsv/test_parallel.rb +0 -7
- data/test/rbbt/tsv/test_parser.rb +0 -101
- data/test/rbbt/tsv/test_stream.rb +0 -253
- data/test/rbbt/tsv/test_util.rb +0 -52
- data/test/rbbt/util/R/test_eval.rb +0 -43
- data/test/rbbt/util/R/test_model.rb +0 -128
- data/test/rbbt/util/R/test_plot.rb +0 -38
- data/test/rbbt/util/concurrency/processes/test_socket.rb +0 -70
- data/test/rbbt/util/concurrency/test_processes.rb +0 -192
- data/test/rbbt/util/concurrency/test_threads.rb +0 -40
- data/test/rbbt/util/log/test_progress.rb +0 -111
- data/test/rbbt/util/misc/test_bgzf.rb +0 -48
- data/test/rbbt/util/misc/test_communication.rb +0 -13
- data/test/rbbt/util/misc/test_development.rb +0 -26
- data/test/rbbt/util/misc/test_format.rb +0 -10
- data/test/rbbt/util/misc/test_indiferent_hash.rb +0 -14
- data/test/rbbt/util/misc/test_lock.rb +0 -77
- data/test/rbbt/util/misc/test_multipart_payload.rb +0 -202
- data/test/rbbt/util/misc/test_omics.rb +0 -116
- data/test/rbbt/util/misc/test_pipes.rb +0 -343
- data/test/rbbt/util/misc/test_serialize.rb +0 -24
- data/test/rbbt/util/python/test_util.rb +0 -25
- data/test/rbbt/util/simpleopt/test_get.rb +0 -12
- data/test/rbbt/util/simpleopt/test_parse.rb +0 -10
- data/test/rbbt/util/simpleopt/test_setup.rb +0 -76
- data/test/rbbt/util/test_R.rb +0 -37
- data/test/rbbt/util/test_chain_methods.rb +0 -22
- data/test/rbbt/util/test_cmd.rb +0 -87
- data/test/rbbt/util/test_colorize.rb +0 -22
- data/test/rbbt/util/test_concurrency.rb +0 -6
- data/test/rbbt/util/test_config.rb +0 -69
- data/test/rbbt/util/test_excel2tsv.rb +0 -10
- data/test/rbbt/util/test_filecache.rb +0 -36
- data/test/rbbt/util/test_log.rb +0 -52
- data/test/rbbt/util/test_migrate.rb +0 -34
- data/test/rbbt/util/test_misc.rb +0 -728
- data/test/rbbt/util/test_open.rb +0 -200
- data/test/rbbt/util/test_procpath.rb +0 -23
- data/test/rbbt/util/test_python.rb +0 -144
- data/test/rbbt/util/test_semaphore.rb +0 -36
- data/test/rbbt/util/test_simpleDSL.rb +0 -55
- data/test/rbbt/util/test_simpleopt.rb +0 -11
- data/test/rbbt/util/test_ssh.rb +0 -10
- data/test/rbbt/util/test_tmpfile.rb +0 -32
- data/test/rbbt/workflow/step/test_dependencies.rb +0 -295
- data/test/rbbt/workflow/step/test_save_load_inputs.rb +0 -136
- data/test/rbbt/workflow/test_doc.rb +0 -30
- data/test/rbbt/workflow/test_remote_workflow.rb +0 -99
- data/test/rbbt/workflow/test_schedule.rb +0 -0
- data/test/rbbt/workflow/test_step.rb +0 -231
- data/test/rbbt/workflow/test_task.rb +0 -85
- data/test/rbbt/workflow/util/test_archive.rb +0 -27
- data/test/rbbt/workflow/util/test_data.rb +0 -67
- data/test/rbbt/workflow/util/test_orchestrator.rb +0 -263
- data/test/test_helper.rb +0 -114
@@ -1,12 +0,0 @@
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require File.join(File.expand_path(File.dirname(__FILE__)), '../../..', 'test_helper.rb')
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require 'rbbt/util/simpleopt/parse'
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require 'rbbt/util/simpleopt/get'
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class TestSOPTParse < Test::Unit::TestCase
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def test_consume
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SOPT.parse("-f--first* first arg:-f--fun")
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args = "-f myfile --fun".split(" ")
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assert_equal "myfile", SOPT.consume(args)[:first]
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end
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end
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require File.join(File.expand_path(File.dirname(__FILE__)), '../../..', 'test_helper.rb')
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require 'rbbt/util/simpleopt/parse'
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class TestSOPTParse < Test::Unit::TestCase
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def test_parse
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SOPT.parse("-f--first* first arg:-f--fun")
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assert_equal "fun", SOPT.shortcuts["fu"]
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end
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end
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require File.join(File.expand_path(File.dirname(__FILE__)), '../../..', 'test_helper.rb')
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require 'rbbt/util/simpleopt/setup'
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class TestSOPTSetup < Test::Unit::TestCase
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def setup
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SOPT.inputs = nil
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SOPT.input_types = nil
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SOPT.input_descriptions = nil
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SOPT.input_shortcuts = nil
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end
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def test_setup
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SOPT.setup <<-EOF
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Test application
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$ test cmd -arg 1
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It does some imaginary stuff
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-a--arg* Argument
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-a2--arg2* Argument
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EOF
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assert_equal "test cmd -arg 1", SOPT.synopsys
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assert SOPT.inputs.include? "arg"
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assert SOPT.inputs.include? "arg2"
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end
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def test_setup_alt
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SOPT.setup <<-EOF
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Test application
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It does some imaginary stuff
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-a--arg* Argument
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-a2--arg2* Argument
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EOF
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assert SOPT.inputs.include? "arg"
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assert SOPT.inputs.include? "arg2"
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end
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def test_setup_alt2
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SOPT.setup <<-EOF
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Test application
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-a--arg* Argument
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-a2--arg2* Argument
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EOF
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assert SOPT.inputs.include? "arg"
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assert SOPT.inputs.include? "arg2"
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end
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def test_setup_alt3
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SOPT.setup <<-EOF
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Pulls the values from a tsv colum
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$ rbbt tsv values [options] <filename.tsv|->
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Use - to read from STDIN
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-tch--tokyocabinet File is a tokyocabinet hash database
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-tcb--tokyocabinet_bd File is a tokyocabinet B database
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-h--help Print this help
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EOF
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assert SOPT.inputs.include? "tokyocabinet"
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end
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end
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data/test/rbbt/util/test_R.rb
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require File.join(File.expand_path(File.dirname(__FILE__)), '../..', 'test_helper.rb')
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require 'rbbt/util/R'
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class TestR < Test::Unit::TestCase
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def test_sum
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assert_equal "6", R.run('cat(3+3)').read.split(/\n/).last
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end
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def test_tsv_R
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tsv = TSV.setup({:a => 1, :b => 2})
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tsv2 = tsv.R <<-EOF
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str(data)
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data = data + 1
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EOF
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assert_equal "2", tsv2["a"].first
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end
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def test_format_tsv
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tsv = TSV.setup({"a" => [1], "b" => [2]}, :type => :list, :key_field => "Letter", :fields => ["Number"])
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assert tsv.transpose("Field").include? "Number"
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end
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def test_error
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assert_raise ProcessFailed do
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R.run <<-EOF
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fadsfasdf
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EOF
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end
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end
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def test_hash2Rargs
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hash = {:verbose => false, :iter => 1000, :method => 'kmeans'}
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str = R.hash2Rargs(hash)
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assert_equal "verbose=FALSE, iter=1000, method='kmeans'", str
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end
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end
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require File.expand_path(File.dirname(__FILE__) + '/../../test_helper')
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require 'rbbt/util/chain_methods'
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require 'test/unit'
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module TestChainedModule
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extend ChainMethods
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def test_chain_get_brackets(value)
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self.test_chain_clean_get_brackets(value).reverse
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end
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self.chain_prefix = :test_chain
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end
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class TestChaimMethods < Test::Unit::TestCase
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def test_chained_reverse_get
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a = ["test", "TEST"]
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a.extend TestChainedModule
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assert_equal "test".reverse, a[0]
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assert_equal "TEST".reverse, a[1]
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end
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end
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data/test/rbbt/util/test_cmd.rb
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require File.expand_path(File.dirname(__FILE__) + '/../../test_helper')
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require 'rbbt/util/cmd'
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require 'test/unit'
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class TestCmd < Test::Unit::TestCase
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def test_cmd_option_string
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assert_equal("--user-agent 'firefox'", CMD.process_cmd_options("--user-agent" => "firefox"))
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assert_equal("--user-agent='firefox'", CMD.process_cmd_options("--user-agent=" => "firefox"))
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assert_equal("-q", CMD.process_cmd_options("-q" => true))
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assert_equal("", CMD.process_cmd_options("-q" => nil))
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assert_equal("", CMD.process_cmd_options("-q" => false))
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assert(CMD.process_cmd_options("--user-agent" => "firefox", "-q" => true) =~ /--user-agent 'firefox'/)
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assert(CMD.process_cmd_options("--user-agent" => "firefox", "-q" => true) =~ /-q/)
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end
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def test_cmd
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assert_equal("test\n", CMD.cmd("echo '{opt}' test").read)
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assert_equal("test", CMD.cmd("echo '{opt}' test", "-n" => true).read)
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assert_equal("test2\n", CMD.cmd("cut", "-f" => 2, "-d" => ' ', :in => "test1 test2").read)
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end
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def test_pipe
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assert_equal("test\n", CMD.cmd("echo test", :pipe => true).read)
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assert_equal("test\n", CMD.cmd("echo '{opt}' test", :pipe => true).read)
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assert_equal("test", CMD.cmd("echo '{opt}' test", "-n" => true, :pipe => true).read)
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assert_equal("test2\n", CMD.cmd("cut", "-f" => 2, "-d" => ' ', :in => "test1 test2", :pipe => true).read)
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end
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def test_error
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assert_raise ProcessFailed do CMD.cmd('fake-command') end
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assert_raise ProcessFailed do CMD.cmd('ls -fake_option') end
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assert_raise ProcessFailed do CMD.cmd('fake-command', :stderr => true) end
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assert_raise ProcessFailed do CMD.cmd('ls -fake_option', :stderr => true) end
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assert_nothing_raised ProcessFailed do CMD.cmd('fake-command', :no_fail => true, :pipe => true) end
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assert_nothing_raised ProcessFailed do CMD.cmd('ls -fake_option', :no_fail => true, :pipe => true) end
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assert_raise ProcessFailed do CMD.cmd('fake-command', :stderr => true, :pipe => true).join end
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assert_raise ConcurrentStreamProcessFailed do CMD.cmd('ls -fake_option', :stderr => true, :pipe => true).join end
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end
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def test_pipes
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text = <<-EOF
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line1
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line2
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line3
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line11
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line22
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line33
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EOF
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TmpFile.with_file(text * 100) do |file|
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Open.open(file) do |f|
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io = CMD.cmd('tail -n 10', :in => f, :pipe => true)
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io2 = CMD.cmd('head -n 10', :in => io, :pipe => true)
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io3 = CMD.cmd('head -n 10', :in => io2, :pipe => true)
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assert_equal 10, io3.read.split(/\n/).length
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end
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end
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end
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def test_STDIN_close
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TmpFile.with_file("Hello") do |file|
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STDIN.close
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Open.open(file) do |f|
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io = CMD.cmd("tr 'e' 'E'", :in => f, :pipe => true)
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txt = io.read
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io.join
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assert_equal "HEllo", txt
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end
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end
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end
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def test_bash
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puts CMD.bash("awk 'test'")
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end
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def test_cmd_error
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-
assert_raise ConcurrentStreamProcessFailed do
|
84
|
-
CMD.cmd_log("ruby -e 'puts 1; STDERR.puts 1; sleep 2; raise'")
|
85
|
-
end
|
86
|
-
end
|
87
|
-
end
|
@@ -1,22 +0,0 @@
|
|
1
|
-
require File.expand_path(File.dirname(__FILE__) + '/../../test_helper')
|
2
|
-
require 'rbbt/util/colorize'
|
3
|
-
require 'test/unit'
|
4
|
-
|
5
|
-
class TestColorize < Test::Unit::TestCase
|
6
|
-
def test_color_array
|
7
|
-
a = (1..16).to_a
|
8
|
-
|
9
|
-
assert_equal 16, Colorize.distinct(a).length
|
10
|
-
assert_equal 16, Colorize.distinct(a).compact.uniq.length
|
11
|
-
end
|
12
|
-
|
13
|
-
def test_from_name
|
14
|
-
assert Colorize.from_name('wheat') =~ /^#/
|
15
|
-
assert Colorize.from_name('green') =~ /^#/
|
16
|
-
end
|
17
|
-
|
18
|
-
def test_color_continuous
|
19
|
-
a = (1..16).to_a
|
20
|
-
assert_equal Colorize.continuous(a).length, Colorize.continuous(a).uniq.length
|
21
|
-
end
|
22
|
-
end
|
@@ -1,69 +0,0 @@
|
|
1
|
-
require File.join(File.expand_path(File.dirname(__FILE__)), '../..', 'test_helper.rb')
|
2
|
-
require 'rbbt/util/config'
|
3
|
-
|
4
|
-
class TestConfig < Test::Unit::TestCase
|
5
|
-
def setup
|
6
|
-
Rbbt::Config.set({:cpus => 30}, :test_config, :test)
|
7
|
-
Rbbt::Config.set(:cpus, 5, "slow::2", :test)
|
8
|
-
Rbbt::Config.set({:token => "token"}, "token")
|
9
|
-
Rbbt::Config.set(:notoken, "no_token")
|
10
|
-
Rbbt::Config.set({:emptytoken => "empty"})
|
11
|
-
end
|
12
|
-
|
13
|
-
def test_simple
|
14
|
-
assert_equal 30, Rbbt::Config.get(:cpus, :test_config)
|
15
|
-
end
|
16
|
-
|
17
|
-
def test_match
|
18
|
-
assert_equal({20 => ["token"]}, Rbbt::Config.match({["key:token"] => "token"}, "key:token"))
|
19
|
-
end
|
20
|
-
|
21
|
-
def test_simple_no_token
|
22
|
-
assert_equal "token", Rbbt::Config.get("token", "token")
|
23
|
-
assert_equal "no_token", Rbbt::Config.get("notoken", "key:notoken")
|
24
|
-
assert_equal 'token', Rbbt::Config.get("token", "key:token")
|
25
|
-
assert_equal 'token', Rbbt::Config.get("token")
|
26
|
-
assert_equal nil, Rbbt::Config.get("token", "someotherthing")
|
27
|
-
assert_equal "default_token", Rbbt::Config.get("token", 'unknown', :default => 'default_token')
|
28
|
-
assert_equal 'empty', Rbbt::Config.get("emptytoken", 'key:emptytoken')
|
29
|
-
end
|
30
|
-
|
31
|
-
def test_prio
|
32
|
-
assert_equal 5, Rbbt::Config.get(:cpus, :slow, :test)
|
33
|
-
end
|
34
|
-
|
35
|
-
def test_with_config
|
36
|
-
Rbbt::Config.add_entry 'key', 'valueA', 'token'
|
37
|
-
assert_equal "valueA", Rbbt::Config.get('key', 'token')
|
38
|
-
assert_equal "default", Rbbt::Config.get('key2', 'token', :default => 'default')
|
39
|
-
|
40
|
-
Rbbt::Config.with_config do
|
41
|
-
Rbbt::Config.add_entry 'key', 'valueB', 'token'
|
42
|
-
Rbbt::Config.add_entry 'key2', 'valueB2', 'token'
|
43
|
-
assert_equal "valueB", Rbbt::Config.get('key', 'token')
|
44
|
-
assert_equal "valueB2", Rbbt::Config.get('key2', 'token', :default => 'default')
|
45
|
-
end
|
46
|
-
|
47
|
-
assert_equal "valueA", Rbbt::Config.get('key', 'token')
|
48
|
-
assert_equal "default", Rbbt::Config.get('key2', 'token', :default => 'default')
|
49
|
-
end
|
50
|
-
|
51
|
-
def test_order
|
52
|
-
Rbbt::Config.add_entry 'key', 'V1', 'token1'
|
53
|
-
Rbbt::Config.add_entry 'key', 'V2', 'token2'
|
54
|
-
Rbbt::Config.add_entry 'key', 'V3', 'token2'
|
55
|
-
|
56
|
-
assert_equal "V3", Rbbt::Config.get('key', 'token2')
|
57
|
-
assert_equal "V1", Rbbt::Config.get('key', 'token1')
|
58
|
-
assert_equal "V3", Rbbt::Config.get('key', 'token2', 'token1')
|
59
|
-
assert_equal "V1", Rbbt::Config.get('key', 'token1', 'token2')
|
60
|
-
end
|
61
|
-
|
62
|
-
def test_default
|
63
|
-
Rbbt::Config.add_entry 'key', 'V1', 'token1'
|
64
|
-
assert_equal "V3", Rbbt::Config.get('key', 'token2', :default => 'V3')
|
65
|
-
end
|
66
|
-
|
67
|
-
|
68
|
-
end
|
69
|
-
|
@@ -1,10 +0,0 @@
|
|
1
|
-
require File.expand_path(File.dirname(__FILE__) + '/../../test_helper')
|
2
|
-
require 'rbbt/util/excel2tsv'
|
3
|
-
|
4
|
-
class TestTSV < Test::Unit::TestCase
|
5
|
-
def test_tsv2excel
|
6
|
-
tsv = TSV.excel2tsv(datafile_test('Test.xls'), :header => true)
|
7
|
-
assert_equal 'Id', tsv.key_field
|
8
|
-
end
|
9
|
-
end
|
10
|
-
|
@@ -1,36 +0,0 @@
|
|
1
|
-
require File.expand_path(File.dirname(__FILE__) + '/../../test_helper')
|
2
|
-
require 'rbbt-util'
|
3
|
-
require 'rbbt/util/filecache'
|
4
|
-
require 'test/unit'
|
5
|
-
|
6
|
-
class TestFileCache < Test::Unit::TestCase
|
7
|
-
|
8
|
-
def test_path
|
9
|
-
assert_equal(File.join(Rbbt.var.cache.filecache.find(:user),'3','2','1','123.ext'), FileCache.path('123.ext'))
|
10
|
-
end
|
11
|
-
|
12
|
-
def test_add_read
|
13
|
-
filename = '123.ext'
|
14
|
-
content = 'test'
|
15
|
-
|
16
|
-
FileCache.add(filename, content)
|
17
|
-
assert_equal(content, File.open(FileCache.path(filename)).read)
|
18
|
-
assert_equal(content, FileCache.get(filename).read)
|
19
|
-
|
20
|
-
FileCache.del(filename)
|
21
|
-
end
|
22
|
-
|
23
|
-
def test_add_io
|
24
|
-
filename = '123.ext'
|
25
|
-
content =<<-EOF
|
26
|
-
test test test
|
27
|
-
test test test
|
28
|
-
EOF
|
29
|
-
|
30
|
-
FileCache.add(filename, StringIO.new(content))
|
31
|
-
assert_equal(content, File.open(FileCache.path(filename)).read)
|
32
|
-
|
33
|
-
FileCache.del(filename)
|
34
|
-
end
|
35
|
-
|
36
|
-
end
|
data/test/rbbt/util/test_log.rb
DELETED
@@ -1,52 +0,0 @@
|
|
1
|
-
require File.join(File.expand_path(File.dirname(__FILE__)), '../..', 'test_helper.rb')
|
2
|
-
require 'rbbt/util/log'
|
3
|
-
|
4
|
-
class TestLog < Test::Unit::TestCase
|
5
|
-
def test_get_level
|
6
|
-
assert_equal 0, Log.get_level(:debug)
|
7
|
-
assert_equal 1, Log.get_level(:low)
|
8
|
-
assert_equal 1, Log.get_level("LOW")
|
9
|
-
assert_equal 1, Log.get_level(1)
|
10
|
-
assert_equal 0, Log.get_level(nil)
|
11
|
-
end
|
12
|
-
|
13
|
-
def test_color
|
14
|
-
assert Log.color(:green, "green")
|
15
|
-
end
|
16
|
-
|
17
|
-
def test_no_stderr
|
18
|
-
Log.ignore_stderr do
|
19
|
-
STDERR.puts "NOPRINT"
|
20
|
-
end
|
21
|
-
end
|
22
|
-
|
23
|
-
def test_trap_stderr
|
24
|
-
Log.trap_stderr do
|
25
|
-
STDERR.puts "NOPRINT"
|
26
|
-
STDERR.puts "NOPRINT"
|
27
|
-
STDERR.puts "NOPRINT"
|
28
|
-
STDOUT.puts "PRINT STDOUT"
|
29
|
-
STDOUT.puts "PRINT STDOUT"
|
30
|
-
end
|
31
|
-
Log.trap_stderr do
|
32
|
-
STDERR.puts "NOPRINT"
|
33
|
-
STDOUT.puts "PRINT STDOUT"
|
34
|
-
end
|
35
|
-
Log.trap_std do
|
36
|
-
STDERR.puts "NOPRINT"
|
37
|
-
STDOUT.puts "NOPRINT STDOUT"
|
38
|
-
end
|
39
|
-
end
|
40
|
-
|
41
|
-
def test_trap_std
|
42
|
-
Log.trap_std do
|
43
|
-
STDERR.puts "NOPRINT STDERR"
|
44
|
-
STDOUT.puts "NOPRINT STDOUT"
|
45
|
-
end
|
46
|
-
Log.trap_std "OUT", "ERR", 4, 2 do
|
47
|
-
STDERR.puts "NOPRINT STDERR"
|
48
|
-
STDOUT.puts "NOPRINT STDOUT"
|
49
|
-
end
|
50
|
-
end
|
51
|
-
end
|
52
|
-
|
@@ -1,34 +0,0 @@
|
|
1
|
-
require File.join(File.expand_path(File.dirname(__FILE__)), '../..', 'test_helper.rb')
|
2
|
-
require 'rbbt-util'
|
3
|
-
require 'rbbt/util/migrate'
|
4
|
-
|
5
|
-
class TestMigrate < Test::Unit::TestCase
|
6
|
-
def test_source_locate
|
7
|
-
assert_equal 'var/jobs/', Rbbt.migrate_source_paths(Rbbt.root['var/jobs'].find(:user)).last
|
8
|
-
assert_include Rbbt.migrate_source_paths(Rbbt.root['var/jobs'].find(:user))[1], (File.join(ENV["HOME"], '.rbbt/var/jobs'))
|
9
|
-
end
|
10
|
-
|
11
|
-
def test_migrate
|
12
|
-
Open.rm_rf Rbbt.tmp.test.migration_test.find(:user)
|
13
|
-
test_file = Rbbt.tmp.test.migration_test.migration_test_file.find(:user)
|
14
|
-
Open.write(test_file, "TEST")
|
15
|
-
TmpFile.with_file do |tmpdir|
|
16
|
-
Misc.in_dir tmpdir do
|
17
|
-
Rbbt.migrate('tmp/test/migration_test/migration_test_file', :current)
|
18
|
-
end
|
19
|
-
assert_equal "TEST", Open.read(File.join(tmpdir, 'tmp/test/migration_test/migration_test_file'))
|
20
|
-
end
|
21
|
-
end
|
22
|
-
|
23
|
-
def __test_migrate_turbo
|
24
|
-
Log.with_severity 0 do
|
25
|
-
TmpFile.with_file do |tmpdir|
|
26
|
-
Misc.in_dir tmpdir do
|
27
|
-
Rbbt.migrate('etc/config', :current, :source => 'mn1')
|
28
|
-
end
|
29
|
-
assert_equal "TEST", Open.read(File.join(tmpdir, 'etc/config'))
|
30
|
-
end
|
31
|
-
end
|
32
|
-
end
|
33
|
-
end
|
34
|
-
|