rbbt-util 5.43.0 → 5.44.0

data/test/rbbt/util/test_misc.rb

@@ -1,728 +0,0 @@
-require File.expand_path(File.dirname(__FILE__) + '/../../test_helper')
-require 'rbbt/util/misc'
-require 'test/unit'
-require 'rbbt/tsv'
-require 'rbbt/entity'
-
-class TestMisc < Test::Unit::TestCase
-
-  def test_object_delta
-    a = []
-    b = nil
-    d = Misc.object_delta(String) do
-      a << rand.to_s
-    end
-    assert_equal 1, a.length
-    assert_match /^0\.\d+$/, a.first
-  end
-
-  def test_format_seconds
-    t = 61.3232
-    assert_equal "00:01:01", Misc.format_seconds(t)
-    assert_equal "00:01:01.32", Misc.format_seconds(t, true)
-  end
-
-  def test_format_paragraph
-    p = <<-EOF
-Lorem ipsum dolor sit amet, consectetur adipisicing elit, sed do eiusmod tempor
-incididunt ut labore et dolore magna aliqua. Ut enim ad minim veniam, quis
-nostrud exercitation ullamco laboris nisi ut aliquip ex ea commodo consequat.
-
-Duis aute irure dolor in reprehenderit in voluptate velit esse cillum dolore eu
-fugiat nulla pariatur. Excepteur sint occaecat cupidatat non proident, sunt
-in culpa qui officia deserunt mollit anim id est laborum.
-
-
-    * one
-    * two
-    * three
-
-    EOF
-
-    assert Misc.format_paragraph(p, 70, 10, 5) =~ /\n\s*\* two/sm
-  end
-
-  def test_format_dl
-    p1 = <<-EOF
-Lorem ipsum dolor sit amet, consectetur adipisicing elit, sed do eiusmod tempor
-incididunt ut labore et dolore magna aliqua. Ut enim ad minim veniam, quis
-nostrud exercitation ullamco laboris nisi ut aliquip ex ea commodo consequat.
-Duis aute irure dolor in reprehenderit in voluptate velit esse cillum dolore eu
-    fugiat nulla pariatur. Excepteur sint occaecat cupidatat non proident, sunt
-    in culpa qui officia deserunt mollit anim id est laborum.
-    EOF
-
-    p2 = <<-EOF
-
-Sed ut perspiciatis unde omnis iste natus error sit voluptatem accusantium
-doloremque laudantium, totam rem aperiam, eaque ipsa quae ab illo inventore
-veritatis et quasi architecto beatae vitae dicta sunt explicabo. Nemo enim
-ipsam voluptatem quia voluptas sit aspernatur aut odit aut fugit, sed quia
-consequuntur magni dolores eos qui ratione voluptatem sequi nesciunt.
-
-Neque porro quisquam est, qui dolorem ipsum quia dolor sit amet, consectetur,
-adipisci velit, sed quia non numquam eius modi tempora incidunt ut labore et
-dolore magnam aliquam quaerat voluptatem. Ut enim ad minima veniam, quis
-nostrum exercitationem ullam corporis suscipit laboriosam, nisi ut aliquid ex
-ea commodi consequatur? Quis autem vel eum iure reprehenderit qui in ea
-voluptate velit esse quam nihil molestiae consequatur, vel illum qui dolorem
-eum fugiat quo voluptas nulla pariatur?"
-    EOF
-
-    assert Misc.format_definition_list({:paragraph_first => p1, :paragraph_second => p2}) =~ /       /
-  end
-
-  def test_parse_cmd_params
-    assert_equal ["workflow", "task", "Translation", "translate", "-f", "Associated Gene Name", "-l", "-"],
-      Misc.parse_cmd_params("workflow task Translation translate -f 'Associated Gene Name' -l -")
-  end
-
-
-  def test_fixutf8
-    string = "abc\xffdef"
-    string = string.force_encoding("UTF-8") if string.respond_to? :force_encoding
-    assert(! string.valid_encoding?) if string.respond_to? :valid_encoding?
-    assert(! string.valid_encoding) if string.respond_to? :valid_encoding
-    assert( Misc.fixutf8(string).valid_encoding?) if string.respond_to? :valid_encoding?
-    assert( Misc.fixutf8(string).valid_encoding) if string.respond_to? :valid_encoding
-  end
-
-  def test_colors_for
-    colors, used = Misc.colors_for([1,2,2,1,2,1,2,2,3,3,2,3,2])
-    assert_equal Misc::COLOR_LIST[1], used[2]
-  end
-
-  def test_total_length
-    ranges = [(0..100), (50..150), (120..160)]
-    ranges = [(0..100), (50..150), (120..160), (51..70)]
-    assert_equal 161, Misc.total_length(ranges)
-  end
-
-  def test_id_filename?
-    TmpFile.with_file("") do |file|
-      assert Misc.is_filename?(file)
-      assert ! Misc.is_filename?("TEST STRING")
-    end
-  end
-
-  def test_merge_sorted_arrays
-    assert_equal [1,2,3,4], Misc.merge_sorted_arrays([1,3], [2,4])
-  end
-
-  def test_intersect_sorted_arrays
-    assert_equal [2,4], Misc.intersect_sorted_arrays([1,2,3,4], [2,4])
-  end
-
-  def test_sorted_array_matches
-    assert_equal [1,3], Misc.sorted_array_hits(%w(a b c d e), %w(b d))
-  end
-
-  def test_binary_include?
-    a = %w(a b c d e).sort
-    assert Misc.binary_include?(a, "a")
-    assert(!Misc.binary_include?(a, "z"))
-    assert(Misc.binary_include?(a, "b"))
-    assert(Misc.binary_include?(a, "c"))
-    assert(Misc.binary_include?(a, "d"))
-  end
-
-  def test_process_to_hash
-    list = [1,2,3,4]
-    assert_equal 4, Misc.process_to_hash(list){|l| l.collect{|e| e * 2}}[2]
-  end
-
-  def test_pipe_fork
-    sout, sin = Misc.pipe
-    pid = Process.fork do
-      Misc.purge_pipes(sin)
-      sleep 2
-      sin.close
-    end
-    sin.close
-    assert sout.eof?
-    Process.kill :INT, pid
-  end
-
-  def test_open_pipe
-    t = 5
-    stream = Misc.open_pipe do |sin|
-      t.times do |i|
-        sleep 0.5
-        sin.puts "LINE #{ i }"
-      end
-    end
-
-    time = Time.now
-    lines = []
-    while line = stream.gets
-      lines << line.strip
-    end
-    time_spent = Time.new - time
-
-    assert time_spent >= t * 0.5
-    assert time_spent <= (t+1) * 0.5
-    assert_equal (0..t-1).to_a.collect{|i| "LINE #{ i }"}, lines
-  end
-
-  def test_open_pipe_fork
-    t = 5
-    stream = Misc.open_pipe(true) do |sin|
-      t.times do |i|
-        sleep 0.5
-        sin.puts "LINE #{ i }"
-      end
-      sin.close
-    end
-
-    time = Time.now
-    lines = []
-    while line = stream.gets
-      lines << line.strip
-    end
-    time_spent = Time.new - time
-
-    assert time_spent >= t * 0.5
-    assert time_spent <= (t+1) * 0.5
-    assert_equal (0..t-1).to_a.collect{|i| "LINE #{ i }"}, lines
-  end
-
-  def test_open_pipe_fork_cascade
-    t = 500
-    sleep_time = 2.0 / t
-    time = Time.now
-
-    stream1 = Misc.open_pipe(true) do |sin|
-      t.times do |i|
-        sleep sleep_time
-        sin.puts "LINE #{ i }"
-      end
-    end
-
-    stream2 = Misc.open_pipe(true) do |sin|
-      while line = stream1.gets
-        sin.puts line.strip.reverse
-      end
-    end
-
-    stream3 = Misc.open_pipe(true) do |sin|
-      while line = stream2.gets
-        sin.puts line.downcase
-      end
-    end
-
-    lines = []
-    while line = stream3.gets
-      lines << line.strip
-    end
-
-    time_spent = Time.new - time
-
-    assert time_spent >= t * sleep_time
-    assert time_spent <= t * 1.2 * sleep_time
-    assert_equal (0..t-1).to_a.collect{|i| "LINE #{ i }".reverse.downcase}, lines
-  end
-
-  def test_tee_stream
-    t = 500
-    sleep_time = 2.0 / t
-    time = Time.now
-
-    stream1 = Misc.open_pipe(true) do |sin|
-      t.times do |i|
-        sleep sleep_time
-        sin.puts "LINE #{ i }"
-      end
-    end
-
-    stream2, stream3 = Misc.tee_stream stream1
-
-    stream4 = Misc.open_pipe(true) do |sin|
-      while line = stream2.gets
-        sin.puts line.strip.reverse
-      end
-    end
-    stream2.close
-
-    stream5 = Misc.open_pipe(true) do |sin|
-      while line = stream3.gets
-        sin.puts line.strip.downcase
-      end
-    end
-    stream3.close
-
-    lines1 = []
-    th1 = Thread.new do
-      while line = stream4.gets
-        lines1 << line.strip
-      end
-    end
-
-    lines2 = []
-    th2 = Thread.new do
-      while line = stream5.gets
-        lines2 << line.strip
-      end
-    end
-    th1.join and th2.join
-
-    time_spent = Time.new - time
-
-    assert time_spent >= t * sleep_time
-    assert time_spent <= t * 1.5 * sleep_time
-    assert_equal (0..t-1).to_a.collect{|i| "LINE #{ i }".reverse}, lines1
-    assert_equal (0..t-1).to_a.collect{|i| "LINE #{ i }".downcase}, lines2
-  end
-
-
-  def test_string2hash
-    assert(Misc.string2hash("--user-agent=firefox").include? "--user-agent")
-    assert_equal(true, Misc.string2hash(":true")[:true])
-    assert_equal(true, Misc.string2hash("true")["true"])
-    assert_equal(1, Misc.string2hash("a=1")["a"])
-    assert_equal('b', Misc.string2hash("a=b")["a"])
-    assert_equal('d', Misc.string2hash("a=b#c=d#:h='j'")["c"])
-    assert_equal('j', Misc.string2hash("a=b#c=d#:h='j'")[:h])
-    assert_equal(:j, Misc.string2hash("a=b#c=d#:h=:j")[:h])
-  end
-
-  def test_named_array
-    a = NamedArray.setup([1,2,3,4], %w(a b c d))
-    assert_equal(1, a['a'])
-  end
-
-  def test_path_relative_to
-    assert_equal "test/foo", Misc.path_relative_to('/test', '/test/test/foo')
-  end
-
-  def test_hash2string
-    hash = {}
-    assert_equal hash, Misc.string2hash(Misc.hash2string(hash))
-
-    hash = {:a => 1}
-    assert_equal hash, Misc.string2hash(Misc.hash2string(hash))
-
-    hash = {:a => true}
-    assert_equal hash, Misc.string2hash(Misc.hash2string(hash))
-
-    hash = {:a => :b}
-    assert_equal hash, Misc.string2hash(Misc.hash2string(hash))
-
-    hash = {:a => /test/}
-    assert_equal({}, Misc.string2hash(Misc.hash2string(hash)))
-
-  end
-
-  def test_merge
-    a = [[1],[2]]
-    a = NamedArray.setup a, %w(1 2)
-    a.merge [3,4]
-    assert_equal [1,3], a[0]
-  end
-
-  def test_indiferent_hash
-    a = {:a => 1, "b" => 2}
-    a.extend IndiferentHash
-
-    assert_equal 1, a[:a]
-    assert_equal 1, a["a"]
-    assert_equal 2, a["b"]
-    assert_equal 2, a[:b]
-  end
-
-  def test_lockfile
-
-    TmpFile.with_file do |tmpfile|
-      pids = []
-      4.times do |i|
-        pids << Process.fork do
-          status = Misc.lock(tmpfile) do
-            pid = Process.pid.to_s
-            Open.write(tmpfile, pid)
-            sleep rand * 1
-            if pid == Open.read(tmpfile)
-              0
-            else
-              1
-            end
-          end
-          exit(status)
-        end
-
-      end
-      pids.each do |pid| Process.waitpid pid; assert $?.success? end
-    end
-  end
-
-  def test_positions2hash
-    inputs = Misc.positional2hash([:one, :two, :three], 1, :two => 2, :four => 4)
-    assert_equal 1, inputs[:one]
-    assert_equal 2, inputs[:two]
-    assert_equal nil, inputs[:three]
-    assert_equal nil, inputs[:four]
-  end
-
-  def test_mean
-    assert_equal 2, Misc.mean([1,2,3])
-    assert_equal 3, Misc.mean([1,2,3,4,5])
-  end
-
-  def test_zip_fields
-    current = [[:a,1], [:b,2]]
-    assert_equal [[:a, :b],[1,2]], Misc.zip_fields(current)
-    assert_equal current, Misc.zip_fields(Misc.zip_fields(current))
-  end
-
-  def test_zip_fields_large
-    current = (1..1500).to_a.collect{|i| ["A#{i}", "B#{i}"]}
-    assert_equal current, Misc.zip_fields(Misc.zip_fields(current))
-    current = (1..150000).to_a.collect{|i| ["A#{i}", "B#{i}"]}
-    assert_equal current, Misc.zip_fields(Misc.zip_fields(current))
-  end
-
-  def test_zip_fields_comp
-    current = [[:a,1], [:b,2], [:c]]
-    assert_equal [[:a, :b, :c],[1,2,nil]], Misc.zip_fields(current)
-    assert_equal current, Misc.zip_fields(Misc.zip_fields(current)).collect{|v| v.compact }
-  end
-
-  def test_add_zipped
-    current = [[:a,1], [:b,2]]
-    new = %w(A B)
-    Misc.append_zipped current, new
-    assert_equal [[:a,1,"A"], [:b,2,"B"]], current
-  end
-
-  def test_divide
-    assert_equal 2, Misc.divide(%w(1 2 3 4 5 6 7 8 9),2).length
-  end
-
-  def test_ordered_divide
-    assert_equal 5, Misc.ordered_divide(%w(1 2 3 4 5 6 7 8 9),2).length
-  end
-
-  def test_collapse_ranges
-    ranges = [(0..100), (50..150), (51..61),(200..250), (300..324),(320..350)]
-    assert_equal [(0..150),(200..250), (300..350)], Misc.collapse_ranges(ranges)
-  end
-
-  def test_humanize
-    str1 = "test_string"
-    str2 = "TEST_string"
-    str3 = "test"
-
-    assert_equal "Test string", Misc.humanize(str1)
-    assert_equal "TEST string", Misc.humanize(str2)
-    assert_equal "Test", Misc.humanize(str3)
-
-    assert_equal "mutation_enrichment", Misc.snake_case("MutationEnrichment")
-  end
-
-  def test_snake_case
-    str1 = "ACRONIMTest"
-    str2 = "ACRONIM_test"
-    assert_equal "ACRONIM_test", Misc.snake_case(str1)
-    assert_equal "ACRONIM_test", Misc.snake_case(str2)
-  end
-
-  def test_correct_vcf_mutations
-    assert_equal [737407, ["-----", "-----G", "-----GTTAAT"]], Misc.correct_vcf_mutation(737406, "GTTAAT", "G,GG,GGTTAAT")
-  end
-
-
-  def test_fingerprint
-    assert_equal '{:a=>1}', Misc.fingerprint({:a => 1})
-  end
-
-  def test_tarize
-    dir = Path.caller_lib_dir(__FILE__)
-    path = File.expand_path(dir)
-    stream = Misc.tarize(path)
-    TmpFile.with_file do |res|
-      Misc.in_dir(res) do
-        CMD.cmd("tar xvfz - ", :in => stream)
-      end
-    end
-  end
-
-  def test_camel_case
-    assert_equal "DbSNP", Misc.camel_case("db_SNP")
-    assert_equal "D3Js", Misc.camel_case("D3Js")
-    assert_equal "Structure", Misc.camel_case("Structure")
-    assert_equal "MutEval", Misc.camel_case("mut_eval")
-    assert_equal "COSMIC", Misc.camel_case("COSMIC")
-  end
-
-  def test_texar
-    ppp Misc.html_tag('textarea', "hola\nadios\nagain")
-  end
-
-  def test_link_title
-    ppp Misc.html_tag('a', "hola\nadios\nagain", :title => "Hola adios")
-  end
-
-  def __test_lock_fd
-    require 'rbbt/workflow'
-    Rbbt.var.jobs.Structure.neighbour_map.glob("*")[0..1000].each do |file|
-      next if file =~ /\.info$/
-      step = Step.new file
-      TSV.open step.path
-    end
-    puts `ls -l /proc/#{ Process.pid }/fd`
-  end
-
-  def test_snake_case
-    assert_equal "kinase_SAR_fari", Misc.snake_case("KinaseSARFari")
-  end
-
-  def test_bootstrap
-    res = Misc.bootstrap((1..10).to_a, 2, :bar => "Test bootstrap ticks", :respawn => :always, :into => []) do |num|
-      sleep 1 + rand(2)
-      num
-    end
-  end
-
-  def test_obj2md5
-    str = "string" *  1000000
-    obj1 = [1,2,"test_str", 0.3, [1,2,3], {:a => [1,2], :b => str}]
-
-    obj2 = [1,2,"test_str", 0.3, [1,2,3], {:a => [1,2,3], :b => str}]
-    obj3 = [1,2,:test_str, 0.3, [1,2,3], {:a => [1,2,"3"], :b => str}]
-
-    assert_not_equal Misc.obj2md5(obj1), Misc.obj2md5(obj2)
-    assert_equal Misc.obj2md5(obj2), Misc.obj2md5(obj3)
-    hash = Hash[*(0..obj1.length).zip(obj1).flatten]
-
-    Misc.benchmark(1000) do
-      Misc.hash2md5(hash)
-    end
-    Misc.benchmark(1000) do
-      Misc.obj2md5(obj1)
-    end
-    Misc.profile do
-      10.times do
-        Misc.hash2md5(hash)
-      end
-    end
-    Misc.profile do
-      10.times do
-        Misc.obj2md5(obj1)
-      end
-    end
-  end
-
-  def test_obj2md5_str_float
-    assert_equal Misc.obj2md5([1,2]), Misc.obj2md5(["1","2"])
-  end
-
-  def test_sample_large_string
-    str = "string" *  1000000
-
-    max = 100
-    assert_equal Misc.sample_large_obj(str, max).length, max+51
-
-    max = 1000
-    assert_equal Misc.sample_large_obj(str, max).length, max+51
-  end
-
-  def test_sample_large_array
-    str = (0..1000000).to_a
-
-    max = 100
-    assert_equal Misc.sample_large_obj(str, max).length, max+29
-
-    max = 1000
-    assert_equal Misc.sample_large_obj(str, max).length, max+29
-  end
-
-  def test_match_value
-    assert Misc.match_value("10", "10")
-    assert Misc.match_value("Hi", /hi/i)
-    assert Misc.match_value("Hi", /Hi/)
-    assert Misc.match_value("Hi", "/Hi/")
-    assert Misc.match_value("Hi", "/hi/i")
-    assert Misc.match_value("15", "<=20")
-    assert Misc.match_value("15", ">14")
-    assert Misc.match_value("15", "! >15")
-    assert Misc.match_value("15", "! >15")
-    assert Misc.match_value("15", [14, 15, 25])
-    assert ! Misc.match_value("15", [14, 25])
-  end
-
-  def __test_bench_log
-    Misc.benchmark(1000) do
-      Log.info { "Hola" }
-    end
-    Misc.benchmark(1000) do
-      Log.debug { "Hola" }
-    end
-    Misc.benchmark(1000) do
-      Log.debug  "Hola" 
-    end
-    p = Misc.pipe
-    Misc.benchmark(1000) do
-      Log.debug  "Hola #{[p.first.inspect, p.last.inspect] * "=>"}" 
-    end
-  end
-
-  def test_sanitize_filename
-    text = "This is a very long line that needs to be split in several lines"
-    assert Misc.break_lines(text, 10).split("\n").length == 1 + text.length / 10
-    assert Misc.break_lines(text, 10).split("\n").select{|l| l.length > 10 }.empty?
-  end
-
-  def test_parse_sql_values
-    str=<<'EOF'
-(xxx,yyy,zzz),(aaa,'bb(,)b',ccc)
-EOF
-    assert Misc.parse_sql_values(str)[1][1] == "bb(,)b"
-  end
-
-  def test_match_fields
-    f1 = "Target (Associated Gene Name)"
-    f2 = "Source (Associated Gene Name)"
-    f3 = "Associated Gene Name"
-
-    assert Misc.match_fields(f1, f2)
-    assert Misc.match_fields(f1, f3)
-    assert Misc.match_fields(f3, f1)
-  end
-
-  def test_case_insensitive
-    hash = {"A" => 1, :b => 2,  "c" => 3}
-    CaseInsensitiveHash.setup hash
-
-    assert_equal 1, hash["A"]
-    assert_equal 1, hash[:A]
-    assert_equal 1, hash[:a]
-    assert_equal 2, hash["B"]
-    assert_equal 2, hash["b"]
-    assert_equal 1, hash[:A]
-    assert_equal 3, hash[:C]
-  end
-  
-  def test_time_stamp
-    assert_equal 10, Misc.timespan('10')
-    assert_equal 10, Misc.timespan('10s')
-    assert_equal 60, Misc.timespan('1min')
-    assert_equal 60, Misc.timespan('00:01:00')
-    assert_equal 60, Misc.timespan('01:00')
-    assert_equal 60, Misc.timespan('0:1:00')
-    assert_equal 60*60*24, Misc.timespan('1d')
-    assert_equal 60*60*24, Misc.timespan('1d')
-    assert_equal 60*60*24, Misc.timespan('24:00:00')
-
-    assert_equal Misc.timespan('1min'), - Misc.timespan('-1min')
-  end
-
-  def test_remove_long_items
-    tsv = TSV.setup({}, "key~value1,value2#:type=:list")
-    tsv["a"] = [2,3]
-    tsv["b"] = [6,7]
-    iii Misc.remove_long_items(tsv)
-    1000.times do |n|
-      tsv[n] = [n*2, n*3]
-    end
-    iii Misc.remove_long_items(tsv)
-  end
-
-  def test_digest_file
-    TmpFile.with_file("FILE CONTENT") do |file|
-      assert_match /^[0-9a-z]{10,}$/, Misc.file2md5(file)
-    end
-  end
-
-  def test_scan_version_text
-    txt =<<-EOF
-Program: bcftools (Tools for variant calling and manipulating VCFs and BCFs)
-Version: 1.10.2-dirty (using htslib 1.10.2-12-gd807564-dirty)
-
-Usage:   bcftools [--version|--version-only] [--help] <command> <argument>
-
-Commands:
-
- -- Indexing
-    index        index VCF/BCF files
-
- -- VCF/BCF manipulation
-    annotate     annotate and edit VCF/BCF files
-    concat       concatenate VCF/BCF files from the same set of samples
-    convert      convert VCF/BCF files to different formats and back
-    isec         intersections of VCF/BCF files
-    merge        merge VCF/BCF files files from non-overlapping sample sets
-    norm         left-align and normalize indels
-    plugin       user-defined plugins
-    query        transform VCF/BCF into user-defined formats
-    reheader     modify VCF/BCF header, change sample names
-    sort         sort VCF/BCF file
-    view         VCF/BCF conversion, view, subset and filter VCF/BCF files
-
- -- VCF/BCF analysis
-    call         SNP/indel calling
-    consensus    create consensus sequence by applying VCF variants
-    cnv          HMM CNV calling
-    csq          call variation consequences
-    filter       filter VCF/BCF files using fixed thresholds
-    gtcheck      check sample concordance, detect sample swaps and contamination
-    mpileup      multi-way pileup producing genotype likelihoods
-    roh          identify runs of autozygosity (HMM)
-    stats        produce VCF/BCF stats
-
- Most commands accept VCF, bgzipped VCF, and BCF with the file type detected
- automatically even when streaming from a pipe. Indexed VCF and BCF will work
- in all situations. Un-indexed VCF and BCF and streams will work in most but
- not all situations.
-    EOF
-
-    assert_equal "1.10.2-dirty", Misc.scan_version_text(txt, "bcftools")
-
-    txt =<<-EOF
-The Genome Analysis Toolkit (GATK) 4.1.4.1
-HTSJDK Version: 2.21.0
-Picard Version: 2.21.2
-    EOF
-    assert_equal "4.1.4.1", Misc.scan_version_text(txt, "gatk")
-
-
-    txt =<<-EOF
-grep (GNU grep) 3.1
-Copyright (C) 2017 Free Software Foundation, Inc.
-License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>.
-This is free software: you are free to change and redistribute it.
-There is NO WARRANTY, to the extent permitted by law.
-
-Written by Mike Haertel and others, see <http://git.sv.gnu.org/cgit/grep.git/tree/AUTHORS>.
-    EOF
-    assert_equal "3.1", Misc.scan_version_text(txt, "grep")
-  end
-
-  def test_bootstrap_current_only_once
-
-     
-    max = Etc.nprocessors * 10
-    TmpFile.with_file do |f|
-      RbbtSemaphore.with_semaphore(1) do |sem|
-        Misc.bootstrap (1..max).to_a do
-          Open.open(f, :mode => 'a') do |sin|
-            sin.puts Process.pid.to_s
-          end
-          Misc.bootstrap (1..10).to_a do
-            RbbtSemaphore.synchronize(sem) do
-              Open.open(f, :mode => 'a') do |sin|
-                sin.puts [Process.ppid.to_s, Process.pid.to_s] * ":"
-              end
-            end
-          end
-        end
-      end
-      assert_equal max * 10 + max, Open.read(f).split("\n").length
-      assert_equal Etc.nprocessors * 2, Open.read(f).split("\n").uniq.length
-    end
-
-  end
-
-  def test_tokenize
-    iii Misc.tokenize("One Two 'this is Three'")
-    iii Misc.tokenize("some - 'Ex t=tr'")
-  end
-end
-