rbbt-util 5.34.21 → 5.34.23

checksums.yaml

@@ -1,7 +1,7 @@
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data/lib/rbbt/workflow/dependencies.rb

@@ -72,9 +72,7 @@ module Workflow
   def setup_override_dependency(dep, workflow, task_name)
     return [] if dep == :skip || dep == 'skip'
 
-    if Step === dep
-      dep = dep.load
-    else
+    if not Step === dep
       located = Open.exists?(dep)
       dep = Workflow.load_step(dep)
     end

data/lib/rbbt/workflow/step/save_load_inputs.rb

@@ -96,7 +96,12 @@ module Workflow
           Log.debug "Opening tsv #{ input } from #{file}"
           inputs[input.to_sym]  = TSV.open(file)
         when :boolean
-          inputs[input.to_sym]  = (file.read.strip == 'true')
+          case file.read.strip.downcase
+          when 'true'
+            inputs[input.to_sym]  = true
+          when 'false'
+            inputs[input.to_sym]  = false
+          end
         when :integer
           inputs[input.to_sym]  = file.read.to_i
         when :float

data/share/rbbt_commands/study/task

@@ -106,7 +106,7 @@ options = SOPT.get <<EOF
 -as--array_separator* Change the character that separates elements of Arrays, ',', '|', or '\\n' by default:
 -cl--clean Clean the last step of the job so that it gets recomputed:
 -rcl--recursive_clean Clean the last step and its dependencies to recompute the job completely:
--n--name* Job name to use. The name 'Default' is used by default:
+-n--name* Job name to use. The name '#{Workflow::DEFAULT_NAME}' is used by default:
 -pn--printname Print the name of the job and exit without starting it:
 -rw--require_workflow* Workflows to require, separated by commas
 EOF
@@ -155,7 +155,7 @@ end
 
 usage workflow, task if help
 
-name = options.delete(:name) || "Default"
+name = options.delete(:name) || Workflow::DEFAULT_NAME
 
 # get job args
 sopt_option_string = SOPT_options(workflow, task)

data/share/rbbt_commands/workflow/task

@@ -178,7 +178,7 @@ available. Examples can be enacted using `rbbt workflow example <workflow>
 [<task>] [<example>]`.
 
 When a task is enacted a job is instantiated. This job is identified by the
-`jobname` (which is *Default* unless specified otherwise) and the values of the
+`jobname` (which is *#{Workflow::DEFAULT_NAME}* unless specified otherwise) and the values of the
 parameters; these two things determine the filename under which the job result
 will be saved. If the taks is enacted using the same `jobname` and parameters
 it will result in the same job, pointing to the same result file.
@@ -194,7 +194,7 @@ The `recursive_clean` cleans all the job dependency steps recursively.
 -wda--workdir_all* Change the working directory of ALL workflow
 -as--array_separator* Change the character that separates elements of Arrays, ',', '|', or '\\n' by default
 -fs--field_separator* Change the character that separates fields of TSV files '\\t' by default
--jn--jobname* Job name to use. The name 'Default' is used by default
+-jn--jobname* Job name to use. The name '#{Workflow::DEFAULT_NAME}' is used by default
 -pn--printname Print the name of the job and exit without starting it
 -pf--printpath Print the path of the job result
 -cl--clean Clean the last step of the job so that it gets recomputed

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: rbbt-util
 version: !ruby/object:Gem::Version
-  version: 5.34.21
+  version: 5.34.23
 platform: ruby
 authors:
 - Miguel Vazquez
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2022-11-28 00:00:00.000000000 Z
+date: 2022-11-30 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: rake